View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_low_16 (Length: 459)
Name: NF15777_low_16
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 13112243 - 13112676
Alignment:
| Q |
10 |
aatatctaaaagcatgctgaagtttcttgctgtgaagacgcttgaactgactcgccacaaattttagatcctccgcttgtagcgcaaaagcttctacttc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13112243 |
aatatctaaaagcatgctgaagtttcttgctgtgaagacgcttgaactgactcgccacaaattttagatcctccgcttgtagcgcaaaagcttctacttc |
13112342 |
T |
|
| Q |
110 |
agtaagagcttttacggtacgagtagaggaaggtaaattgagagttgagtttggtaataatgcccatgttaacaattcttctccacaaaagtctcctggc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13112343 |
agtaagagcttttacggtacgagtagaggaaggtaaattgagagttgagtttggtaataatgcccatgttaacaattcttctccacaaaagtctcctggc |
13112442 |
T |
|
| Q |
210 |
cttagtgtgattgaattgaagaatccataccttcctccatttgttgtagaactctccaatgttcctctaatgataaacaacatttcatctaccggatcgt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13112443 |
cttagtgtgattgaattgaagaatccataccttcctccatttgttgtagaactctccaatgttcctctaatgataaacaacatttcatctaccggatcgt |
13112542 |
T |
|
| Q |
310 |
cctcttgaaatatatatgtgccttgtgtgcttagtgatgatacaaggcgttcacatattgcatcaagtagttgatcatccatttgtgagaagaaagacac |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13112543 |
cctcttgaaatatatatgtgccttgtgtgcttagtgatgatacaaggcgttcacatattgcatcaagtagttgatcatccatttgtgagaagaaaggcac |
13112642 |
T |
|
| Q |
410 |
ctatataatatggtaattcatacaaacaaattaa |
443 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
13112643 |
ctatataatatgataatttatataaacaaattaa |
13112676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 403
Target Start/End: Complemental strand, 24979528 - 24979317
Alignment:
| Q |
192 |
ccacaaaagtctcctggccttagtgtgattgaattgaagaatccataccttcctccatttgttgtagaactctccaatgttcctctaatgataaacaaca |
291 |
Q |
| |
|
|||||||| ||||| || || | | ||||||| |||||||| ||| || || ||||||||||||||||| || | | | ||||||||||||||||||| |
|
|
| T |
24979528 |
ccacaaaaatctccaggtctcaatatgattgagttgaagaaaccagtccggccaccatttgttgtagaactatctagtctgcctctaatgataaacaaca |
24979429 |
T |
|
| Q |
292 |
tttcatctaccggatcgtcctcttgaaatatatatgtgccttgtgtgcttagtgatgatacaaggcgttcacatattgcatcaagtagttgatcatccat |
391 |
Q |
| |
|
||||| ||| || || |||| ||| || || |||||| | |||||||| || ||||| || || |||||||| |||||||| || ||||||||||| |
|
|
| T |
24979428 |
tttcagttacagggtcaccctcacgaacaatgtaggtgcctagagtgcttagagaagataccagccgctcacatatcgcatcaagaagctgatcatccat |
24979329 |
T |
|
| Q |
392 |
ttgtgagaagaa |
403 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24979328 |
ttgtgagaagaa |
24979317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 40678347 - 40678256
Alignment:
| Q |
171 |
gcccatgttaacaattcttctccacaaaagtctcctggccttagtgtgattgaattgaagaatccataccttcctccatttgttgtagaact |
262 |
Q |
| |
|
|||||||||| ||||||||| |||||||| || ||||| ||||||||||||||||||||||||| | || || |||| |||||||||||| |
|
|
| T |
40678347 |
gcccatgttagcaattcttcaccacaaaaatcacctggttttagtgtgattgaattgaagaatcctgatctaccaccatctgttgtagaact |
40678256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 400
Target Start/End: Complemental strand, 50399702 - 50399665
Alignment:
| Q |
363 |
catattgcatcaagtagttgatcatccatttgtgagaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50399702 |
catattgcatcaagtagttgatcatccatttgtgagaa |
50399665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 40678506 - 40678408
Alignment:
| Q |
12 |
tatctaaaagcatgctgaagtttcttgctgtgaagacgcttgaactgactcgccacaaattttagatcctccgcttgtagcgcaaaagcttctacttca |
110 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||||||||| ||||| || | ||||||||| ||||| || ||| || ||||| |||||||||||| |
|
|
| T |
40678506 |
tatctgaaagcatgttgcagtttcttgctatgaagacgcttaaactggcttgacacaaatttgagatcttctgctctaagtgcaaatgcttctacttca |
40678408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University