View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_18 (Length: 427)
Name: NF15777_low_18
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 40396027 - 40395645
Alignment:
| Q |
16 |
aatatacaactattcaaactgattctagatcacacataataacatggaatatatgcatgttatgtgagctggatgacgtcgagtttgtcgaagtaaataa |
115 |
Q |
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| T |
40396027 |
aatatacaactattcaaactgattctagatcacacataataacatggaatatatgcatgtcatgtgagctggatgacgtcgagtttgtcgaagtaaataa |
40395928 |
T |
|
| Q |
116 |
tgtcatcaaatgaaatttcctcataacttctcaatttttgtagactggcaaaaaatagtcaagtttgtttttcacaaaaataacatttgccacgtacttc |
215 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395927 |
tgtcatcaaatgaaatctcctcataacttctcgatttttgtagactggcaaaaaatagtcaagtttgtttttcacaaaaataacatttgccacgtacttc |
40395828 |
T |
|
| Q |
216 |
ttnnnnnnnnnnnnnntatttgccacgtatatataatacaccgtccaagaatttagaagaaaaatatcaccaattactggtgcaatttcctttattgatt |
315 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40395827 |
ttaaaaaaaataa----aattgccacgtatatataatacaccgtccaagaatttagaagaaaaaaatcaccaattactggtgcaatttcctttattgatt |
40395732 |
T |
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| Q |
316 |
tcaatcagtcttttgcc--ccatgacatgtacatatgtaaacatatgtacatgagggaatgaagtctaagtgatcatcaagaacaagttgaagttgg |
410 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395731 |
tcaatcagtcttttgccagccatgacatgt----------acatatgtacatgagggaatgaagtctaagtgatcatcaagaacaagttgaagttgg |
40395645 |
T |
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