View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_low_19 (Length: 426)
Name: NF15777_low_19
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 26721740 - 26722147
Alignment:
| Q |
1 |
agacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
26721740 |
agacgaaggatgaatggtgttgtcgctgctatcctttcaaggaatgttagaggcttatcactctcttttgaagagcatgttcccaaagtgattgggaaaa |
26721839 |
T |
|
| Q |
101 |
tcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttat |
200 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26721840 |
acaaactcactttttttt-----atctcattctcttcttacttttaatttcattttattctgtaataatgataacgagattgtttctatctacactttat |
26721934 |
T |
|
| Q |
201 |
aggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgt |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26721935 |
aggttctacaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaagactctatttgttgtgt |
26722034 |
T |
|
| Q |
301 |
aatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26722035 |
aatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
26722134 |
T |
|
| Q |
401 |
actcagaataatc |
413 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26722135 |
actcagaataatc |
26722147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 45117169 - 45116775
Alignment:
| Q |
1 |
agacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaaca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||| |
|
|
| T |
45117169 |
agacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggctcatcactctctttttaagagcatgctcccaaagtgattgggaaca |
45117070 |
T |
|
| Q |
101 |
tcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttat |
200 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45117069 |
tcaaattcactttttttt-----atctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttat |
45116975 |
T |
|
| Q |
201 |
aggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
45116974 |
aggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgag-------------aaaatggtttaagactctatttgttgtgt |
45116888 |
T |
|
| Q |
301 |
aatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45116887 |
aatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
45116788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 2987208 - 2987603
Alignment:
| Q |
1 |
agacgaaggatgaatggtgttgtcgctgccatccattcaaggaatgtaagaggcttatcactctctgttgaagagcatgttcccaaagtgattgggaaca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
2987208 |
agacgaaggatgaaaggtgttgtcgctgccatcctttcaaggaatgtaagaggcttatcactctctttttaagagcatgttcccaaagtgattgggaaca |
2987307 |
T |
|
| Q |
101 |
tcaaactcacnnnnnnnnnnnnnatctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctacactttat |
200 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2987308 |
tcaaattcacttttttttt----atctcattctcttcttacttttaatttcattttattctgtaataatgataatgagattgtttctatctatactttat |
2987403 |
T |
|
| Q |
201 |
aggttctgcaaatatggttcaaagaagaaaaatcatgagccttggattatgatttgaggttgtaatttgagaaaatggttcaagactctatttgttgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
2987404 |
aggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgattt-------------gagaaaatggtttaatactctatttgttgtgt |
2987490 |
T |
|
| Q |
301 |
aatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctccaattaattttttcttctc |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2987491 |
aatttccatcaatgttctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaattaattttttcttctc |
2987590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University