View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_low_20 (Length: 424)

Name: NF15777_low_20
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_low_20
NF15777_low_20
[»] scaffold0186 (1 HSPs)
scaffold0186 (22-403)||(22485-22869)
[»] chr8 (27 HSPs)
chr8 (26-403)||(41570208-41570585)
chr8 (251-403)||(18881850-18882001)
chr8 (155-339)||(13541418-13541603)
chr8 (155-339)||(13682870-13683055)
chr8 (155-403)||(38699685-38699933)
chr8 (155-384)||(43115119-43115347)
chr8 (182-366)||(38172759-38172948)
chr8 (178-323)||(4072227-4072373)
chr8 (26-263)||(6115005-6115242)
chr8 (178-323)||(21441593-21441739)
chr8 (177-363)||(40118063-40118247)
chr8 (178-323)||(41323181-41323327)
chr8 (155-274)||(32415814-32415934)
chr8 (58-245)||(18881312-18881503)
chr8 (259-403)||(12491566-12491711)
chr8 (251-379)||(1233551-1233675)
chr8 (251-379)||(13640907-13641031)
chr8 (286-379)||(13741319-13741409)
chr8 (295-403)||(6114891-6114998)
chr8 (317-377)||(25337926-25337985)
chr8 (155-217)||(5808783-5808845)
chr8 (40-136)||(1233758-1233853)
chr8 (155-293)||(31911087-31911226)
chr8 (237-267)||(18881806-18881836)
chr8 (80-136)||(12491513-12491569)
chr8 (83-131)||(32415742-32415790)
chr8 (81-117)||(38173003-38173039)
[»] chr4 (24 HSPs)
chr4 (63-406)||(21790578-21790922)
chr4 (22-400)||(54165895-54166268)
chr4 (26-337)||(48861778-48862087)
chr4 (155-337)||(48841086-48841262)
chr4 (167-403)||(8745635-8745871)
chr4 (155-403)||(17815906-17816149)
chr4 (284-403)||(6016763-6016882)
chr4 (285-403)||(22786054-22786172)
chr4 (178-323)||(43892522-43892668)
chr4 (285-403)||(2407181-2407300)
chr4 (182-336)||(52628216-52628371)
chr4 (251-367)||(46693934-46694050)
chr4 (317-403)||(11950600-11950686)
chr4 (289-378)||(5476358-5476447)
chr4 (295-379)||(16608373-16608454)
chr4 (295-338)||(8762618-8762661)
chr4 (36-121)||(2407059-2407143)
chr4 (40-136)||(16608580-16608675)
chr4 (289-377)||(42318948-42319035)
chr4 (22-117)||(52628054-52628149)
chr4 (26-121)||(22785922-22786016)
chr4 (22-109)||(48840955-48841041)
chr4 (165-258)||(8762706-8762800)
chr4 (80-121)||(6016919-6016960)
[»] chr1 (32 HSPs)
chr1 (155-403)||(47367775-47368025)
chr1 (26-337)||(23614420-23614729)
chr1 (155-403)||(1600504-1600755)
chr1 (167-403)||(11142599-11142835)
chr1 (169-403)||(44961379-44961613)
chr1 (155-384)||(10406128-10406355)
chr1 (155-385)||(10177812-10178042)
chr1 (155-366)||(19313298-19313507)
chr1 (159-403)||(52110950-52111177)
chr1 (178-323)||(15757676-15757822)
chr1 (259-403)||(30950761-30950906)
chr1 (178-323)||(10620063-10620209)
chr1 (259-391)||(29799018-29799150)
chr1 (286-377)||(24134376-24134466)
chr1 (22-136)||(29799147-29799260)
chr1 (286-379)||(27696493-27696583)
chr1 (279-338)||(28403126-28403185)
chr1 (289-378)||(40268669-40268759)
chr1 (298-366)||(33240850-33240918)
chr1 (62-136)||(29357157-29357230)
chr1 (303-403)||(21972478-21972576)
chr1 (303-403)||(46515655-46515753)
chr1 (40-136)||(5184893-5184988)
chr1 (295-375)||(29358495-29358572)
chr1 (295-377)||(10989196-10989278)
chr1 (22-116)||(11142455-11142548)
chr1 (219-320)||(8262067-8262168)
chr1 (301-370)||(33322903-33322972)
chr1 (155-262)||(33241370-33241477)
chr1 (303-377)||(5184669-5184741)
chr1 (22-71)||(1600813-1600862)
chr1 (80-136)||(30950903-30950959)
[»] chr5 (20 HSPs)
chr5 (162-403)||(16908575-16908815)
chr5 (155-403)||(41639989-41640237)
chr5 (163-367)||(40360994-40361197)
chr5 (178-323)||(17768976-17769122)
chr5 (178-323)||(13517498-13517644)
chr5 (225-337)||(34034071-34034183)
chr5 (259-391)||(40528123-40528255)
chr5 (155-362)||(19948812-19949018)
chr5 (295-395)||(7008942-7009042)
chr5 (222-384)||(17695850-17696012)
chr5 (251-403)||(6536537-6536689)
chr5 (303-403)||(42353206-42353304)
chr5 (289-377)||(14521679-14521766)
chr5 (26-136)||(34033857-34033965)
chr5 (295-378)||(3498434-3498517)
chr5 (36-136)||(40528252-40528351)
chr5 (22-121)||(16908856-16908953)
chr5 (56-131)||(22098932-22099006)
chr5 (155-213)||(22099030-22099088)
chr5 (84-136)||(19949037-19949089)
[»] chr3 (29 HSPs)
chr3 (26-337)||(16152081-16152390)
chr3 (178-385)||(17652926-17653133)
chr3 (285-403)||(20843140-20843258)
chr3 (295-403)||(52403230-52403338)
chr3 (178-323)||(21295932-21296078)
chr3 (178-323)||(46823804-46823950)
chr3 (159-274)||(11027932-11028048)
chr3 (240-400)||(29648402-29648564)
chr3 (295-385)||(38171472-38171566)
chr3 (259-403)||(40763813-40763958)
chr3 (159-263)||(52403345-52403449)
chr3 (295-403)||(11906547-11906655)
chr3 (30-129)||(11906792-11906890)
chr3 (295-379)||(19795664-19795745)
chr3 (165-263)||(11906662-11906760)
chr3 (286-380)||(37175495-37175588)
chr3 (286-379)||(35062063-35062153)
chr3 (304-385)||(40785772-40785851)
chr3 (259-403)||(3458029-3458173)
chr3 (298-377)||(35106470-35106547)
chr3 (303-377)||(36312269-36312341)
chr3 (29-128)||(52403473-52403571)
chr3 (155-217)||(29123490-29123552)
chr3 (40-136)||(19795443-19795538)
chr3 (82-136)||(40785343-40785397)
chr3 (80-121)||(20843296-20843337)
chr3 (159-230)||(31434187-31434259)
chr3 (40-136)||(35061851-35061946)
chr3 (80-136)||(40763760-40763816)
[»] chr2 (19 HSPs)
chr2 (161-403)||(4435175-4435417)
chr2 (237-403)||(42799108-42799275)
chr2 (285-403)||(45655899-45656017)
chr2 (219-367)||(21746137-21746285)
chr2 (259-403)||(16546354-16546499)
chr2 (284-396)||(39070154-39070267)
chr2 (301-403)||(14802671-14802774)
chr2 (219-274)||(26180634-26180689)
chr2 (289-379)||(35524657-35524747)
chr2 (259-396)||(37614591-37614731)
chr2 (22-136)||(26180446-26180560)
chr2 (63-136)||(16546285-16546357)
chr2 (22-117)||(4435037-4435132)
chr2 (63-135)||(42799345-42799417)
chr2 (155-229)||(18159944-18160019)
chr2 (155-245)||(18161103-18161193)
chr2 (165-258)||(8230253-8230347)
chr2 (165-258)||(35524790-35524884)
chr2 (161-245)||(18308106-18308191)
[»] scaffold0005 (1 HSPs)
scaffold0005 (167-403)||(292189-292425)
[»] chr7 (31 HSPs)
chr7 (235-400)||(34659370-34659535)
chr7 (178-385)||(48609044-48609251)
chr7 (155-403)||(29715766-29716014)
chr7 (184-337)||(758835-758989)
chr7 (184-337)||(46211663-46211817)
chr7 (295-403)||(25592168-25592276)
chr7 (178-323)||(39719879-39720025)
chr7 (259-403)||(13465458-13465603)
chr7 (26-263)||(25591924-25592161)
chr7 (188-337)||(83617-83768)
chr7 (159-344)||(37202722-37202908)
chr7 (164-370)||(17949051-17949259)
chr7 (259-403)||(28491315-28491460)
chr7 (305-385)||(4677983-4678061)
chr7 (295-396)||(14047053-14047153)
chr7 (295-396)||(14357083-14357183)
chr7 (286-379)||(45855585-45855676)
chr7 (40-136)||(45855373-45855468)
chr7 (155-217)||(27097112-27097174)
chr7 (155-217)||(27181129-27181191)
chr7 (155-217)||(37712936-37712998)
chr7 (301-379)||(40253593-40253671)
chr7 (303-377)||(20926806-20926878)
chr7 (22-121)||(34658884-34658982)
chr7 (286-377)||(37049134-37049224)
chr7 (297-344)||(25439575-25439623)
chr7 (80-136)||(28491262-28491318)
chr7 (51-139)||(29716028-29716114)
chr7 (155-210)||(34659016-34659071)
chr7 (80-136)||(25439655-25439711)
chr7 (304-403)||(37003822-37003919)
[»] chr6 (19 HSPs)
chr6 (178-337)||(34729775-34729935)
chr6 (159-373)||(29486376-29486588)
chr6 (22-263)||(22956511-22956752)
chr6 (22-263)||(23831640-23831881)
chr6 (184-337)||(29363531-29363685)
chr6 (155-343)||(24428716-24428907)
chr6 (295-403)||(21216444-21216552)
chr6 (295-403)||(22956396-22956504)
chr6 (295-403)||(23831888-23831996)
chr6 (259-403)||(1780595-1780740)
chr6 (295-403)||(31216241-31216346)
chr6 (295-379)||(8559888-8559969)
chr6 (159-263)||(31216353-31216459)
chr6 (303-385)||(903993-904073)
chr6 (155-213)||(27673963-27674021)
chr6 (341-379)||(33224841-33224879)
chr6 (80-136)||(8560095-8560151)
chr6 (80-136)||(1780737-1780793)
chr6 (40-104)||(33224553-33224616)
[»] scaffold0110 (1 HSPs)
scaffold0110 (38-274)||(6960-7196)
[»] scaffold0481 (1 HSPs)
scaffold0481 (155-331)||(6599-6773)
[»] scaffold1554 (1 HSPs)
scaffold1554 (22-261)||(575-812)
[»] scaffold0002 (2 HSPs)
scaffold0002 (237-354)||(428333-428449)
scaffold0002 (82-131)||(428555-428604)
[»] scaffold0004 (1 HSPs)
scaffold0004 (286-379)||(212060-212150)
[»] scaffold1709 (1 HSPs)
scaffold1709 (155-210)||(1396-1451)


Alignment Details
Target: scaffold0186 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 22 - 403
Target Start/End: Original strand, 22485 - 22869
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    |||||||||||| |||||||||||||||| ||||| |||| ||||||||| | ||||  |||| ||||||||||||| ||| |||||||||||| |||||    
T  22485 gctacccaaaaataatattattcttgagtaggtagatatgcatttatatttagctacctccaa-taataaacattgaactatctcaaataagtttagttg 22583  T
Q  122 ccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagat----tcatttgtattggtttgaaacttccggtctcaataacaactat 217  Q
    || |||||||||||| ||               ||||||||||||||||| ||    ||||||||||||||||| |||||||||| ||||||||||| ||    
T  22584 ccgaaaattagcatagataagaaagttaaacaattactacatgattgatatataaattcatttgtattggtttggaacttccggtttcaataacaacaat 22683  T
Q  218 t-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattga 316  Q
      |||||||||||| || |||||||||||||||||||||||||||||||||||||||| || | ||  ||||||||| |||||||||||||||||||||     
T  22684 agagaaaactttttcaataataaaaattatcaagacaatagtcataaacatattaaatgggcattgaatttcttgcaaataacctatttgtttacattgg 22783  T
Q  317 aaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||  ||||||  |||| |||||||||||    
T  22784 aaaaaacattattaatctattttgtaaacaatcaattatgaataaaattgacttcttgaaa-tcattttgtccaaattttctaaata 22869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 26 - 403
Target Start/End: Original strand, 41570208 - 41570585
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaa 125  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||| ||||||||||||| |    
T  41570208 cccaaaaacaatatttttcttgagttggtaggtatgtatttatattcagctac-cccaaataataaatattgagctaccccaaaaaagttcagttgccga 41570306  T
Q  126 aaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt---agaa 222  Q
    ||||| ||||| ||               ||| ||||||||||||||||  || |||||||||||| ||||| |||||| | ||||||||||    ||||    
T  41570307 aaatttgcatatataagaaagttaaaaaattattacatgattgatagat--atgtgtattggtttggaactttcggtcttattaacaactatatagagaa 41570404  T
Q  223 aacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaaga 322  Q
    |||||||| || ||||| ||||||||||  ||||||||||||||||||||||  |||||| |||||||||| ||||||||||||||||| || ||||| |    
T  41570405 aactttttcaacaataacaattatcaagtaaatagtcataaacatattaaatgagtaatgagtttcttgcaaataacctatttgtttacctt-aaaaaaa 41570503  T
Q  323 cattattaatctattttgtaaataatcaattatggat-aaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    ||  |||||||||||||||||| |||||||||||||| ||||||| |||||| |||| |||||   ||||||||||||||||    
T  41570504 caacattaatctattttgtaaacaatcaattatggataaaaattggcttcttgaaacgcatttagtccaacttttctaaata 41570585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 251 - 403
Target Start/End: Original strand, 18881850 - 18882001
Alignment:
Q  251 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 350  Q
    |||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  351 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||||||||| |||||| |||  ||||||  |||| |||||||||||    
T  18881950 attatggataaaattgccttcttgaaa-tcattttgtccaaattttctaaata 18882001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 339
Target Start/End: Complemental strand, 13541603 - 13541418
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 253  Q
    |||||| | |||||||| ||| |||||||||||||||| |||| |||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||    
T  13541603 ttactataagattgatatatttatttgtattggtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagaca 13541504  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 339  Q
    ||||||||| | | ||||||| |  |||| |||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||    
T  13541503 atagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatattattaatctatttt 13541418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 339
Target Start/End: Original strand, 13682870 - 13683055
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 253  Q
    |||||| | |||||||| ||| |||||||||||||||| |||| |||||| ||||||||| ||  ||||| |||||| || |||||||||||||||||||    
T  13682870 ttactataagattgatatatttatttgtattggtttgatactttcggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagaca 13682969  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 339  Q
    ||||||||| | | ||||||| |  |||| |||||||||| ||||||||||| ||||||||  |||||| ||||||||||||||||    
T  13682970 atagtcatagataaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagatattattaatctatttt 13683055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 155 - 403
Target Start/End: Complemental strand, 38699933 - 38699685
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagac 252  Q
    |||||||| |||||| ||||| ||||||||| |||||| |||  || ||||||||||||| | |||| |||| ||||| || ||||||||||||||||||    
T  38699933 ttactacaagattgacagatttatttgtatttgtttgatactctcgatctcaataacaac-agtagagaaacatttttcaacaataaaaattatcaagac 38699835  T
Q  253 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 352  Q
    |||||||||  ||| ||||||| |  | || |||||||||| ||||||||||| ||||||||  ||||||||||||||||||||| | |||| | || ||    
T  38699834 aatagtcatggacaaattaaatggagagtgagtttcttgcaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagtctat 38699736  T
Q  353 tatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    ||| ||| ||||||  ||||| |||| ||||||  ||||| ||||||||||    
T  38699735 tattgatgaaattgggttcttgaaacgcattttgcccaacgtttctaaata 38699685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 155 - 384
Target Start/End: Original strand, 43115119 - 43115347
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaactttttt-aaaaataaaaattatcaagaca 253  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| ||||||||||||| | |||| ||||||||| || |||||||||||||||||||    
T  43115119 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaac-aatagagaacttttttcaacaataaaaattatcaagaca 43115217  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatt 353  Q
    ||||||||  | | | ||||| |  | || |||||||||| ||||| ||||| ||||||||  |||| |||||||||||||||| | |||| | ||||||    
T  43115218 atagtcattgaaaaactaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacattattaatctattat-taaacagtcaatt 43115316  T
Q  354 atggataaaattgacttcttaaaacacattt 384  Q
    || ||| ||||||  ||||| |||| |||||    
T  43115317 attgatgaaattgggttcttgaaacgcattt 43115347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 182 - 366
Target Start/End: Complemental strand, 38172948 - 38172759
Alignment:
Q  182 tattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaa 280  Q
    ||||||||||| |||| | |||| |||||||| |||  |||||||||| | || |||||||||||||||||||||||||||||||| |||||||    ||    
T  38172948 tattggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaa 38172849  T
Q  281 tgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatc----tattttgtaaataatcaattatggataaaattg 366  Q
    || |||| ||||| |||||||||| |||||||||| | || ||||||||||||    ||||| ||||| | |||||||||||||||||||    
T  38172848 tgagtttattgcaaataacctattagtttacattggagaatacattattaatctatatatttagtaaacactcaattatggataaaattg 38172759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 4072373 - 4072227
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||| | |||||||||||||| || | ||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  4072373 tttgtattggtttgatactttccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 4072274  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  4072273 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 4072227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 263
Target Start/End: Complemental strand, 6115242 - 6115005
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaa 125  Q
    |||||||| |||||||||||||  || || ||||||||| ||||| || |||| |  |||||||||||||||| ||||| |||| |||||||||||||||    
T  6115242 cccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctac-cataaataataaacattgaactaccccaaacaagttcagttgccaa 6115144  T
Q  126 aaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaa 224  Q
    ||| || |||| ||               ||| ||||| ||||||||||| |||||||||||||||  ||||| | |||||||||||| |||  ||| ||    
T  6115143 aaaataacataaataagaaagtaaaaaaattattacatcattgatagatttatttgtattggtttggtacttctgatctcaataacaattatagagagaa 6115044  T
Q  225 cttttttaaaaataaaaattatcaagacaatagtcataa 263  Q
    ||||||||| |||||||| |||||||||| |||||||||    
T  6115043 cttttttaacaataaaaactatcaagacagtagtcataa 6115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 21441739 - 21441593
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| || ||||||||| ||||| |||||||||||| ||| |||||||      
T  21441739 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgt 21441640  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  21441639 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 21441593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 177 - 363
Target Start/End: Original strand, 40118063 - 40118247
Alignment:
Q  177 atttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    |||| ||||||||||| ||||||    |||||||||| ||| |||||||||||| || ||||||||||||||||| |||||||||||||| ||||||| |    
T  40118063 atttatattggtttgatacttccaaattcaataacaattat-agaaaactttttcaacaataaaaattatcaagataatagtcataaacaaattaaatgg 40118161  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaa 363  Q
      ||||  ||| ||||| |||| ||||| |||||||||| |||| | ||||||||||||  | ||||| | ||||||||||| ||||    
T  40118162 acaatgaatttattgcaaataatctattagtttacattg-aaaatatattattaatctacctagtaaacactcaattatggaaaaaa 40118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 41323327 - 41323181
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaa-aataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| || |  |||| ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  41323327 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 41323228  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| |||| |||||| ||||||||  |||||||    
T  41323227 acaatgagtttcttgcaaataaactatttatttacatttgaaaagac 41323181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 274
Target Start/End: Original strand, 32415814 - 32415934
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagaca 253  Q
    ||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||| ||| |||||||| ||||    | ||| |||||| ||||||    
T  32415814 ttactacatcattgatagatttatttatattggtttgatacttccggtctcaataacaattatatagaaaaccttttcggtagtaacaattattaagaca 32415913  T
Q  254 atagtcataaacatattaaat 274  Q
    ||| ||||||||| |||||||    
T  32415914 ataatcataaacaaattaaat 32415934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 18881312 - 18881503
Alignment:
Q  58 tatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnntta 157  Q
    |||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||  |||||  |||||||||||| ||               |||    
T  18881312 tatgtatttatatttagctacacc-aaataataaacattgaactacctcaaataagtttggttgctgaaaattagcatagataagaaagttaaacaatta 18881410  T
Q  158 ctacatgattg----atagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaatta 245  Q
    |||||||||||    ||| |||||||||||||| |||| |||||||||| ||||||||||| ||  |||||||||||| || |||||||||||    
T  18881411 ctacatgattgatatataaattcatttgtattgatttggaacttccggtttcaataacaacgatagagaaaactttttcaataataaaaatta 18881503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 403
Target Start/End: Original strand, 12491566 - 12491711
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||   ||||||||||    
T  12491566 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 12491665  T
Q  358 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    ||| |||||  ||||| |||  |||||||  |||||||| ||||||    
T  12491666 atacaattggtttcttgaaatgcattttacacaacttttttaaata 12491711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 1233675 - 1233551
Alignment:
Q  251 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 350  Q
    |||||||| | ||||| ||||||||| ||||  ||| ||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||    
T  1233675 acaatagtgagaaacaaattaaatagataataagtt-cttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatca 1233580  T
Q  351 attatggataaaattgacttcttaaaaca 379  Q
    |||||||||||||||||||||||||||||    
T  1233579 attatggataaaattgacttcttaaaaca 1233551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 251 - 379
Target Start/End: Complemental strand, 13641031 - 13640907
Alignment:
Q  251 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 350  Q
    |||||||| | ||||| ||||||||| ||||  ||| ||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||    
T  13641031 acaatagtgagaaacaaattaaatagataataagtt-cttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatca 13640936  T
Q  351 attatggataaaattgacttcttaaaaca 379  Q
    |||||||||||||||||||||||||||||    
T  13640935 attatggataaaattgacttcttaaaaca 13640907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 13741409 - 13741319
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  13741409 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 13741319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 6114998 - 6114891
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    |||| ||||| || ||||||| |||| | |||||||||||||||| |||||| ||  |||||||||||||||  ||||| |||||||||||| ||| |||    
T  6114998 ataatctattcgtgtacattggaaaatatattattaatctattttataaatagtcctttatggataaaattg-gttcttgaaacacattttatccagctt 6114900  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  6114899 ttttaaata 6114891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 25337985 - 25337926
Alignment:
Q  317 aaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    ||||||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||    
T  25337985 aaaagacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaa 25337926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 5808845 - 5808783
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 217  Q
    ||||||||| ||||||||||| ||||||||||| |||| ||||   |||||||||||||||||    
T  5808845 ttactacatcattgatagattaatttgtattgggttgatacttttagtctcaataacaactat 5808783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 1233853 - 1233758
Alignment:
Q  40 tattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||| ||| ||||| ||||| |||||||||| | |||| ||||||||||||| ||||||||||| |||  |||||  |||||| ||||||| ||||    
T  1233853 tattcatgaattggttggtatatatttatatttagctac-cccaaataataaatattgagctaccccaagcaagtttggttgccgaaaattaacata 1233758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 293
Target Start/End: Complemental strand, 31911226 - 31911087
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 253  Q
    |||||| |||||||||||||| |||||||||  ||||| | || | ||||||| || || |||  ||||||||||| ||| ||||||||||  | | |||    
T  31911226 ttactatatgattgatagatttatttgtattaatttgatagtttcagtctcaacaataaatatagagaaaacttttataagaataaaaatttgctaaaca 31911127  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgca 293  Q
    ||||||| ||| | |||||| |  ||||| ||||||||||    
T  31911126 atagtcaaaaataaattaaacaaataatgagtttcttgca 31911087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 18881806 - 18881836
Alignment:
Q  237 taaaaattatcaagacaatagtcataaacat 267  Q
    |||||||||||||||||||||||||||||||    
T  18881806 taaaaattatcaagacaatagtcataaacat 18881836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 12491513 - 12491569
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||| |||||||||||| || |||| || |||||||||| ||||||| ||||    
T  12491513 cccaaataacaaacattgagctgccccaaacaaattcagttgccgaaaattaacata 12491569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 32415742 - 32415790
Alignment:
Q  83 aaataataaacattgagctacctcaaataagttcagttgccaaaaatta 131  Q
    ||||||||||||||||| |||| ||||||| || ||||| |||||||||    
T  32415742 aaataataaacattgagttaccccaaataaattaagttgtcaaaaatta 32415790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 38173039 - 38173003
Alignment:
Q  81 ccaaataataaacattgagctacctcaaataagttca 117  Q
    |||||||||||||||||||||||| |||| |||||||    
T  38173039 ccaaataataaacattgagctaccccaaacaagttca 38173003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 63 - 406
Target Start/End: Original strand, 21790578 - 21790922
Alignment:
Q  63 atttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacatnnnnnnnnnnnnnnnttactaca 162  Q
    |||||||||||||||| || |||||||||| ||||||| |||  |||||| |||||||||| ||||||| |||| ||               ||||||||    
T  21790578 atttatattcaactac-cctaaataataaatattgagccaccataaataaattcagttgccgaaaattaacataaataagaaatttaaaatattactaca 21790676  T
Q  163 tgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcat 261  Q
    ||||||||  ||| |||| ||||||||||| |||||||||||||||| ||| |||  |||||||||||| ||   |||||||||| ||||| ||||||||    
T  21790677 tgattgattaatttatttatattggtttgatacttccggtctcaatagcaattatagagaaaactttttaaacggtaaaaattattaagactatagtcat 21790776  T
Q  262 aaacatattaaataggtaatgcgtttctt--gcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggat 359  Q
    ||||| || |||| |  |||| |||| ||  ||| ||||||||||| ||||| ||| ||||||||||||||||||| || ||||| |||||||||||||     
T  21790777 aaacaaataaaatggacaatgagttttttttgcaaataacctatttatttac-ttggaaaagacattattaatctagttagtaaacaatcaattatggac 21790875  T
Q  360 aaaattgacttcttaaaacacattttaaccaacttttctaaatacct 406  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||||    
T  21790876 aaaattgacttcttaaaatgcattttacccaacttttctaaatacct 21790922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 22 - 400
Target Start/End: Complemental strand, 54166268 - 54165895
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    |||||||||||| || ||||||||| | | ||| |||| |||||| ||| || |||  |||||||||||||||||||||||||||||| |||||||||||    
T  54166268 gctacccaaaaaaaaaattattcttcaatcggtcggtaagtatttttatccagctat-cccaaataataaacattgagctacctcaaacaagttcagttg 54166170  T
Q  122 ccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-ag 220  Q
     | |||||||| ||| ||               |||||||||||||||||||||   || ||||||||||| |||| | || |||||||||| |||  |     
T  54166169 tctaaaattaggataaataagaaagtaaaaatattactacatgattgatagattttattatattggtttgatactttcagtttcaataacaattatagat 54166070  T
Q  221 aaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaa 320  Q
    |||||||||| || |||||||||||||||||||||| ||||||| | ||||||| |  |||| |||| ||||| |||||||||| |||||||||||||||    
T  54166069 aaaactttttcaacaataaaaattatcaagacaatattcataaataaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaa 54165970  T
Q  321 gacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaa 400  Q
     ||||||||||||||     |||    ||||||||||| |||||||| ||||| ||| |||||||  |||||||||||||    
T  54165969 tacattattaatcta-----taatcgctcaattatggaaaaaattgatttcttgaaatacattttgtccaacttttctaa 54165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 337
Target Start/End: Original strand, 48861778 - 48862087
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaa 125  Q
    |||||||| | |||||||||||| ||  | ||||| |||||||||||  |||| ||||||||||||||||| ||||||| |||||||||| |||||| ||    
T  48861778 cccaaaaaaagtattattcttgaattaatcggtatatatttatattcggctac-cccaaataataaacattaagctaccccaaataagtttagttgc-aa 48861875  T
Q  126 aaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaa 224  Q
    ||||||||||| ||               | |||||| |||||||||||| |||||||||||||||| | || |||||||||||||||| || | ||||     
T  48861876 aaattagcataaataataaagtaaaaaact-actacaagattgatagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaac 48861974  T
Q  225 cttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagaca 324  Q
    |||||| || || |||||||||||||||||||||| || ||| |||||| ||  |||| |||||||||| ||||| ||||| |||||||| |||||| ||    
T  48861975 ctttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtca 48862074  T
Q  325 ttattaatctatt 337  Q
    |||||||||||||    
T  48862075 ttattaatctatt 48862087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 337
Target Start/End: Original strand, 48841086 - 48841262
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 254  Q
    |||||||| ||||||| |||| |||||||||||||||| ||||||| ||||||||||||     ||||| |||||| || ||||||||||||||||||||    
T  48841086 ttactacaagattgatggatttatttgtattggtttgatacttccgatctcaataacaag----agaaacctttttcaacaataaaaattatcaagacaa 48841181  T
Q  255 tagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 337  Q
      |||||| ||| ||||||| | ||||| |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  48841182 --gtcatagacaaattaaatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 48841262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 403
Target Start/End: Complemental strand, 8745871 - 8745635
Alignment:
Q  167 tgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaac 265  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||||||||| ||  ||||  |||||| || |||||||||||||||||||||| ||||| ||    
T  8745871 tgatagatttatttgtattggtttgatactcccgatctcaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatattcatagac 8745772  T
Q  266 atattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaatt 365  Q
    | ||||||| |  |||| ||||||| |  ||||||||||| ||||||||  ||||||||||||||||||||| | ||||||  ||||||| ||| |||||    
T  8745771 aaattaaatggacaatgagtttcttacgaataacctatttatttacatttgaaaagacattattaatctattat-taaataggcaattattgatgaaatt 8745673  T
Q  366 gacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |  ||||  |||||||||||  ||||| ||||||||||    
T  8745672 gggttctcgaaacacattttgcccaacgtttctaaata 8745635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 403
Target Start/End: Complemental strand, 17816149 - 17815906
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 253  Q
    |||||||||| |||||||||| || ||||||||||||  ||||||  ||| ||||||||||||  ||||||||| || || |||||||||||||||||||    
T  17816149 ttactacatgtttgatagatttatatgtattggtttggtacttccaatcttaataacaactatagagaaaacttattcaacaataaaaattatcaagaca 17816050  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgcaga-taac---ctatttgtttacattgaaaaagacattattaatctattttgtaaataatc 349  Q
     ||||         ||| ||| || |||| |||||||||| | ||||   ||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  17816049 gtagt---------attcaatgggcaatgagtttcttgcaaaataacttactatttgtttacattaaaaaa-acattattaatctattttgtaaacaatc 17815960  T
Q  350 aattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    || ||||||||||||||||||||| |||| ||||||  ||||||||| ||||||    
T  17815959 aactatggataaaattgacttctttaaacgcattttgcccaacttttttaaata 17815906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 284 - 403
Target Start/End: Complemental strand, 6016882 - 6016763
Alignment:
Q  284 gtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatt 383  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||||| ||| || |||  ||||    
T  6016882 gtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatggataaaattggcttattgaaatgcatt 6016783  T
Q  384 ttaaccaacttttctaaata 403  Q
    ||| ||||||||| ||||||    
T  6016782 ttacccaacttttttaaata 6016763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 22786054 - 22786172
Alignment:
Q  285 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 384  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||   || |||||||||||||||| |||||| |||  |||||    
T  22786054 tttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatggataaaattggcttcttgaaatgcattt 22786153  T
Q  385 taaccaacttttctaaata 403  Q
    || ||||||||| ||||||    
T  22786154 tacccaacttttttaaata 22786172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 43892668 - 43892522
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  43892668 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgt 43892569  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
    | |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  43892568 gcaatgagtttcttgcaaataacctatttatttacatttgaaaagac 43892522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 285 - 403
Target Start/End: Original strand, 2407181 - 2407300
Alignment:
Q  285 tttcttgcagataacctatttgtttacattg-aaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatt 383  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||   |||||||| ||||||||||||||||| |||  ||||    
T  2407181 tttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattgataaaattgacttcttgaaatgcatt 2407280  T
Q  384 ttaaccaacttttctaaata 403  Q
    |||  |||||||| ||||||    
T  2407281 ttactcaacttttttaaata 2407300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 336
Target Start/End: Original strand, 52628216 - 52628371
Alignment:
Q  182 tattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaa 280  Q
    ||||||||||| |||| | |||| |||||||| |||  |||||||||| | || |||||||||||||||||||||||||||||| | |||||||    ||    
T  52628216 tattggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaataaattaaatgaacaa 52628315  T
Q  281 tgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 336  Q
    || |||| ||||| |||||||||| |||||||||| |||| | |||||||||||||    
T  52628316 tgagtttattgcaaataacctattagtttacattggaaaatatattattaatctat 52628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 367
Target Start/End: Complemental strand, 46694050 - 46693934
Alignment:
Q  251 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 350  Q
    |||||||||||||||| |||||| |  ||||| |||||||||| || |  ||||| |||| |||||||| ||| ||||||||||||||| || | |||||    
T  46694050 acaatagtcataaacaaattaaacaaataatgagtttcttgcaaatgaattatttatttatattgaaaaggacgttattaatctattttatatacaatca 46693951  T
Q  351 attatggataaaattga 367  Q
    |||||  ||||||||||    
T  46693950 attataaataaaattga 46693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 11950600 - 11950686
Alignment:
Q  317 aaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    ||||||||| |||||||||||||||||||| ||| ||||| || |||||| |||||| || || |||||  ||||||||||||||||    
T  11950600 aaaagacatcattaatctattttgtaaatagtcatttatgaattaaattggcttcttgaagcagattttgtccaacttttctaaata 11950686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 378
Target Start/End: Complemental strand, 5476447 - 5476358
Alignment:
Q  289 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaac 378  Q
    ||||| ||||| |||||||||||||||||||||||||||||| | ||||| |||   |||||||| || | |||||| |||| |||||||    
T  5476447 ttgcaaataacttatttgtttacattgaaaaagacattattagtgtatttagtatgcaatcaattctgaagaaaattaactttttaaaac 5476358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 16608454 - 16608373
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    |||||||||| |||||||||||||| ||||||| ||| || || | |||| ||| ||||||||||||||||||||||||||||||    
T  16608454 ataacctatt-gtttacattgaaaa-gacattagtaaccttttat-taaacaatgaattatggataaaattgacttcttaaaaca 16608373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 8762661 - 8762618
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattt 338  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  8762661 ataacttatttgtttacattgaaaaagacattattagtctattt 8762618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 2407059 - 2407143
Alignment:
Q  36 atattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    |||||| |||| | ||||| |||||  |||||| |||| |||| ||||||||||||||||||||||||| ||| ||| ||||||||    
T  2407059 atattaatctttaattggttggtataaatttattttcagctac-cccaaataataaacattgagctaccccaactaaattcagttg 2407143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 16608675 - 16608580
Alignment:
Q  40 tattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||| ||| ||||| ||||| |||||||||| | |||| ||||||||||||| ||||||||||| |||| |||||  ||| || ||||||| ||||    
T  16608675 tattcatgaattggttggtatatatttatatttagctac-cccaaataataaatattgagctaccccaaaaaagtttggttaccgaaaattaacata 16608580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 42319035 - 42318948
Alignment:
Q  289 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    ||||| ||||| ||||| ||||||||||||  || ||||||||||||||| ||||| |   |||||||||||||| |||||| ||||||    
T  42319035 ttgcaaataacatatttatttacattgaaag-gatattattaatctatttagtaaacataaaattatggataaaagtgactttttaaaa 42318948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 52628054 - 52628149
Alignment:
Q  22 gctacccaaaaacaata-ttattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttca 117  Q
    ||||||| |||| |||| |||||||| | | ||| ||||||||||||||| |  |||| | ||||||||||||||||||||||| |||| |||||||    
T  52628054 gctaccccaaaaaaataattattcttcaatcggtcggtatgtatttatatccggctac-ctcaaataataaacattgagctaccccaaacaagttca 52628149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 22785922 - 22786016
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    ||||||||  |||||| |||| | ||||| |||||  |||||| |||  |||| ||||||||||||||||||||||||| |||| || ||||||||    
T  22785922 cccaaaaaatatattaatctttaattggttggtataaatttattttcggctac-cccaaataataaacattgagctaccccaaacaaattcagttg 22786016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 48840955 - 48841041
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaa 109  Q
    ||||||| |||| || ||||||||| | || || ||||||||||||||| |  |||| || |||||||||||||||||||||| ||||    
T  48840955 gctaccccaaaaaaaaattattctttaattcgtcggtatgtatttatatccggctac-cctaaataataaacattgagctaccccaaa 48841041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 8762800 - 8762706
Alignment:
Q  165 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagt 258  Q
    ||||||||||| ||||||||| |||  | |||| ||||||||||||||| | |  |||||||||||  || |||||||||| |||| ||||||||    
T  8762800 attgatagatttatttgtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaatagt 8762706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 6016960 - 6016919
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    ||||||||||||||||||||||||| |||| || ||||||||    
T  6016960 cccaaataataaacattgagctaccccaaacaaattcagttg 6016919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 155 - 403
Target Start/End: Original strand, 47367775 - 47368025
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaat-aaaaattatcaagac 252  Q
    ||||||||||||||||||||| ||||||| |||||||  | || | ||| |||||||||||||  ||||||||||||||| ||| ||||||||||||| |    
T  47367775 ttactacatgattgatagatttatttgtaatggtttggtattttcagtcgcaataacaactatagagaaaacttttttaacaattaaaaattatcaaggc 47367874  T
Q  253 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 352  Q
    |||||| |||||||||| |||  || |||| |||||||||| |||  ||| |||||||||||| | |||||||||| | | ||||||||||| ||||||     
T  47367875 aatagttataaacatatcaaacgggcaatgagtttcttgcaaatagtctaattgtttacattggagaagacattatcattatattttgtaaacaatcaaa 47367974  T
Q  353 tatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||||||| ||| || |||||||||||  ||||||||| ||||||    
T  47367975 tatggataaaattgcctttttgaaacacattttgtccaacttttttaaata 47368025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 26 - 337
Target Start/End: Original strand, 23614420 - 23614729
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaa 125  Q
    |||||||| | |||||||||||| ||  | ||||| ||||||||| |  |||| || ||||||||||||||||||||||||||||||||| |||||| ||    
T  23614420 cccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctac-cctaaataataaacattgagctacctcaaataagtttagttgc-aa 23614517  T
Q  126 aaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaa 224  Q
    ||||||||||| ||               | |||||| |||||||||||| |||||||||||||||| | || |||||||||||||||| || | ||||     
T  23614518 aaattagcataaataataaagtaaaaaact-actacaagattgatagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaac 23614616  T
Q  225 cttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagaca 324  Q
    |||||| || || |||||||| ||||||||||||| || ||| |||||| ||  |||| |||||||||| ||||| ||||| |||||||| |||||| ||    
T  23614617 ctttttcaacaacaaaaattaacaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtca 23614716  T
Q  325 ttattaatctatt 337  Q
    |||||||||||||    
T  23614717 ttattaatctatt 23614729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 403
Target Start/End: Complemental strand, 1600755 - 1600504
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 253  Q
    |||||||| |||||||||||| ||||| ||||||||||  ||| |||||||||||||||| ||  ||||| | |||| || |||||||||||||||||||    
T  1600755 ttactacaagattgatagatttatttgcattggtttgatgctttcggtctcaataacaacaatagagaaacccttttcaacaataaaaattatcaagaca 1600656  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaaga---cattattaatctattttgtaaataatca 350  Q
    ||||||||| ||| ||||||| |  |||| |||||||||| ||||||||||| ||||||||  ||||||   ||| ||||||||||| | ||||||| ||    
T  1600655 atagtcatagacaaattaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagaaatcatcattaatctattat-taaataaaca 1600557  T
Q  351 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    ||||| ||| ||||||  ||| | ||||  |||||| ||||| ||||||||||    
T  1600556 attattgatgaaattgggttcctgaaacgtattttacccaacatttctaaata 1600504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 403
Target Start/End: Original strand, 11142599 - 11142835
Alignment:
Q  167 tgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaac 265  Q
    ||||||||| |||||||||||||||| ||| ||| ||| ||||||||| ||  ||||  |||||| || |||||||||||||||||||||| | ||| ||    
T  11142599 tgatagatttatttgtattggtttgatactcccgatctaaataacaacaatagagaagcctttttcaacaataaaaattatcaagacaatatttatagac 11142698  T
Q  266 atattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaatt 365  Q
    | ||||||| |  |||| |||||||||  ||||||||||  ||||||||  ||||||||||||||||||||| | |||| |  ||||||| |||||||||    
T  11142699 aaattaaatggacaatgagtttcttgcgaataacctattcatttacatttgaaaagacattattaatctattat-taaacagacaattattgataaaatt 11142797  T
Q  366 gacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |  ||||| |||||||||||| ||||| ||||||||||    
T  11142798 gggttcttgaaacacattttacccaacgtttctaaata 11142835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 169 - 403
Target Start/End: Original strand, 44961379 - 44961613
Alignment:
Q  169 atagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacat 267  Q
    ||||||| ||||| |||| |||||  ||| |||||||||||||||| ||  ||||| | |||| || | |||||||||||||||||||||||||| |||     
T  44961379 atagatttatttgcattgatttgatgctttcggtctcaataacaacaatagagaaacccttttcaacagtaaaaattatcaagacaatagtcatagacaa 44961478  T
Q  268 attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattga 367  Q
    ||||||| |  |||| |||||||||| ||||||||||| ||||||||  ||||||||| ||||||||||| | ||||||| | ||||| ||| |||||||    
T  44961479 attaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatcattaatctattat-taaataaacgattattgatgaaattga 44961577  T
Q  368 cttcttaaaacacattttaaccaacttttctaaata 403  Q
     ||| | ||||  |||||| ||||| ||||||||||    
T  44961578 attcctgaaacgtattttacccaacatttctaaata 44961613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 155 - 384
Target Start/End: Complemental strand, 10406355 - 10406128
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 254  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| |||||||||||||||  |||||  ||||| || ||||| ||||||||||||||    
T  10406355 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaacta-gagaaacttttttcaacaataataattatcaagacaa 10406257  T
Q  255 tagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatta 354  Q
    |||||||  ||| | ||||| |  | || |||||||||| ||||||||||| ||||||||  |||| |||||||||||||||| | |||| | |||||||    
T  10406256 tagtcattgacaaactaaatggacagtgagtttcttgcaaataacctatttatttacattcgaaaaaacattattaatctattat-taaacagtcaatta 10406158  T
Q  355 tggataaaattgacttcttaaaacacattt 384  Q
    | ||| ||||||  ||||| |||| |||||    
T  10406157 ttgatgaaattgggttcttgaaacgcattt 10406128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 155 - 385
Target Start/End: Original strand, 10177812 - 10178042
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaactttttt-aaaaataaaaattatcaagac 252  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| ||||||||||||| | |||| |||||||||| || ||||||||||||||||||    
T  10177812 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaac-aatagagaaacttttttcaacaataaaaattatcaagac 10177910  T
Q  253 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 352  Q
    |||||||||  ||| | ||||| |    || |||||||||| ||||||||||| || |||||  |||| |||||||||||||||| | |||| | |||||    
T  10177911 aatagtcattgacaaactaaatggacggtgagtttcttgcaaataacctatttattcacatttgaaaaaacattattaatctattat-taaacagtcaat 10178009  T
Q  353 tatggataaaattgacttcttaaaacacatttt 385  Q
    ||| ||| ||||||| ||||| |||| ||||||    
T  10178010 tattgatgaaattgagttcttgaaacgcatttt 10178042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 155 - 366
Target Start/End: Original strand, 19313298 - 19313507
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagac 252  Q
    |||||||| ||||||| |||  |||||||||  ||||| ||| ||| ||||||||||||| || ||| |||||||||| || ||||||||||||||| ||    
T  19313298 ttactacaagattgatggat--atttgtatttctttgatactcccgatctcaataacaacaat-agagaaacttttttcaacaataaaaattatcaaaac 19313394  T
Q  253 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaat 352  Q
    |||||||||| ||| ||||||||| || || |||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||| | |||| | |||||    
T  19313395 aatagtcatagacaaattaaatagatagtgagtttcttgcaaataacttatttatttacatttgaaaagacattattaatctattat-taaacagtcaat 19313493  T
Q  353 tatggataaaattg 366  Q
    ||| ||| ||||||    
T  19313494 tattgatgaaattg 19313507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 159 - 403
Target Start/End: Complemental strand, 52111177 - 52110950
Alignment:
Q  159 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagt 258  Q
    ||||| ||||||| ||| |||||||||||||||| |||| || |||||||||||||||  |||||||| ||| || |||||||||||||| || |||| |    
T  52111177 tacataattgataaatttatttgtattggtttgatactttcgatctcaataacaacta-gagaaaactatttcaacaataaaaattatcatgaaaataat 52111079  T
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 358  Q
    |||||||| ||||||||                || | |||||||||||||| |||| |||||||||||||||| | ||| ||||| | ||||||||| |    
T  52111078 cataaacaaattaaata----------------catacaacctatttgtttatattggaaaagacattattaatttgtttagtaaaaagtcaattatgaa 52110995  T
Q  359 taaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||| |||||||||||  |||||  ||||||||| ||||||    
T  52110994 taaaattggcttcttaaaacgtattttgtccaacttttttaaata 52110950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 15757676 - 15757822
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  15757676 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 15757775  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  15757776 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 15757822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 30950906 - 30950761
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||   ||||||||||    
T  30950906 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatgg 30950807  T
Q  358 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  30950806 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 30950761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 10620063 - 10620209
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  10620063 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 10620162  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||| | ||||||||||| ||||||||  |||||||    
T  10620163 acaatgagtttcttgaaaataacctatttatttacatttgaaaagac 10620209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 391
Target Start/End: Complemental strand, 29799150 - 29799018
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 358  Q
    |||||||| ||||||| | || || ||||||| || |||||||||||||||||||||  |||||||||||||||| |||| |||||| ||||| ||| ||    
T  29799150 cataaacaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatcaatttagtaaatgatcaaatataga 29799051  T
Q  359 taaaattgacttcttaaaacacattttaaccaa 391  Q
    |||||||| |||||| |||  ||||||| ||||    
T  29799050 taaaattggcttcttgaaatgcattttacccaa 29799018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 24134376 - 24134466
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    |||||||| ||||| |||||||||||||| ||||| |||||| |||||| |||   ||||| ||||||||||||||||||||||||||||||    
T  24134376 ttcttgcaaataacatatttgtttacatttaaaaa-acattaataatctttttatcaaatagtcaattatggataaaattgacttcttaaaa 24134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 29799260 - 29799147
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    ||||||||||||  |||||| |||| | ||||| |||||  ||||||||||  |||| |||||||||||||||||||| |||  ||||||| ||||||||    
T  29799260 gctacccaaaaaatatattaatctttaattggttggtataaatttatattcggctac-cccaaataataaacattgagttactccaaataaattcagttg 29799162  T
Q  122 ccaaaaattagcata 136  Q
    ||||||| |||||||    
T  29799161 ccaaaaactagcata 29799147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 379
Target Start/End: Complemental strand, 27696583 - 27696493
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  27696583 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 27696493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 28403126 - 28403185
Alignment:
Q  279 aatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattt 338  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28403126 aatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctattt 28403185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 378
Target Start/End: Original strand, 40268669 - 40268759
Alignment:
Q  289 ttgcagataacctatttgtttacattgaaaaagacattattaatctatttt-gtaaataatcaattatggataaaattgacttcttaaaac 378  Q
    ||||| ||||| || ||||||| ||| ||||||||||||||| ||||||||  |||| ||| |||||| ||||||||||||||||||||||    
T  40268669 ttgcaaataacttacttgtttagatttaaaaagacattattagtctattttaataaacaattaattatagataaaattgacttcttaaaac 40268759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 33240918 - 33240850
Alignment:
Q  298 acctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattg 366  Q
    ||||||| |||||||||| |||| |||||||||||||||||  |||| | |||||||||||||||||||    
T  33240918 acctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattg 33240850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 29357157 - 29357230
Alignment:
Q  62 tatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    |||||||||| | |||| ||||||||||||| ||||||||||| |||||||||| ||||||| ||||||| ||||    
T  29357157 tatttatatttagctac-cccaaataataaatattgagctaccccaaataagtttagttgccgaaaattaacata 29357230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 21972478 - 21972576
Alignment:
Q  303 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 402  Q
    |||| |||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||| ||||||||||| || ||||  |||| |||| |||||    
T  21972478 tttgcttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaatacgttttgcccaaattttttaaat 21972575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 46515655 - 46515753
Alignment:
Q  303 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 402  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | ||||| |||||||||||||| ||||||||| || ||||  |||| |||| |||||    
T  46515655 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaatcatggataaaattgagttcttaaaatacgttttgcccaaattttttaaat 46515752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 5184988 - 5184893
Alignment:
Q  40 tattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    |||||||||  |||| ||||| |||||||||| | |||| ||||||||||||| |||||| ||||  |||||||||| |||| | ||||||||||||    
T  5184988 tattcttgaactggttggtatctatttatatttagctac-cccaaataataaatattgagttaccctaaataagttcggttgtctaaaattagcata 5184893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 375
Target Start/End: Original strand, 29358495 - 29358572
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaa 375  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| |||||||||||||||||| |||||||||||    
T  29358495 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaagaatcaattatggataaaagtgacttcttaa 29358572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 377
Target Start/End: Complemental strand, 10989278 - 10989196
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    ||||| |||||||||||||||||||||||||||||| | ||||| |||   |||||||| || | |||||| |||| ||||||    
T  10989278 ataacttatttgtttacattgaaaaagacattattagtatatttagtatgcaatcaattctgaagaaaattaactttttaaaa 10989196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 11142455 - 11142548
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttc 116  Q
    ||||||| |||| |||||||| ||| |  |||| |||||||| ||||||||  |||| | ||||||||||||||||||||||  |||||||||||    
T  11142455 gctaccccaaaaaaatattatacttaaagtggtcggtatgtacttatattcggctac-ctcaaataataaacattgagctactccaaataagttc 11142548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 320
Target Start/End: Original strand, 8262067 - 8262168
Alignment:
Q  219 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaa 318  Q
    |||| |||||||||| |||||||||| | |  |||||||| | ||||| |||||| || |||||  ||||||| | ||||| |||||| |||||||||||    
T  8262067 agaagacttttttaagaataaaaattgttagaacaatagttagaaacaaattaaacagataatgaatttcttgtaaataacttatttgcttacattgaaa 8262166  T
Q  319 aa 320  Q
    ||    
T  8262167 aa 8262168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 33322972 - 33322903
Alignment:
Q  301 tatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgactt 370  Q
    |||||||||| |||| |||||| |||| || ||||||| ||| | ||||||||||| |||||||||||||    
T  33322972 tatttgtttatattgtaaaagaaattactagtctatttagtatacaatcaattatgaataaaattgactt 33322903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 33241477 - 33241370
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagaca 253  Q
    ||||||||| | | ||||||| |||| ||||| ||||| ||||   ||||||| ||||| |||  |||||||||||  || |||||||||||||||||||    
T  33241477 ttactacataactaatagatttatttatattgatttgatacttttagtctcaacaacaattatagagaaaacttttc-aacaataaaaattatcaagaca 33241379  T
Q  254 atagtcata 262  Q
    |||||||||    
T  33241378 atagtcata 33241370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 5184741 - 5184669
Alignment:
Q  303 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    ||||||||||||||||| ||||||| ||||||||||  |||  | ||||||||| |||||||||||| |||||||    
T  5184741 tttgtttacattgaaaa-gacattaataatctatttattaac-agtcaattatgcataaaattgactccttaaaa 5184669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 1600862 - 1600813
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatatt 71  Q
    |||||| ||||| ||||||||||||||  |||| ||||||||||||||||    
T  1600862 gctaccaaaaaaaaatattattcttgaagtggttggtatgtatttatatt 1600813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 30950959 - 30950903
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    |||||||||||||||||||||  || |||| || |||||||||| ||||||| ||||    
T  30950959 cccaaataataaacattgagcatccccaaacaaattcagttgccgaaaattaacata 30950903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 403
Target Start/End: Complemental strand, 16908815 - 16908575
Alignment:
Q  162 atgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtca 260  Q
    ||||||||||||||  ||| ||||||||||| |||||||||||||||||||| |||  |||||||||||  ||  ||||||||||| ||||||||||| |    
T  16908815 atgattgatagatttgtttatattggtttgatacttccggtctcaataacaattatagagaaaacttttc-aacgataaaaattattaagacaatagtta 16908717  T
Q  261 taaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggata 360  Q
    |||| | ||||||| |  |||  ||||||| ||  ||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||    
T  16908716 taaataaattaaatggacaata-gtttctttcaagtaacctatttgtttacattgaaaaatacattattaatctatttagtaaacagtcaattatggata 16908618  T
Q  361 aaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    || ||| ||| || |||  ||||||| ||||||||||||||||    
T  16908617 aatttggctttttgaaatgcattttacccaacttttctaaata 16908575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 155 - 403
Target Start/End: Complemental strand, 41640237 - 41639989
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagaca 253  Q
    |||||||| |||||||||||| |||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| || ||||||||| ||||||| |    
T  41640237 ttactacaagattgatagatttatttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagaaa 41640138  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatt 353  Q
    ||||||||| ||| |||||||    |||| |||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||| | |||| || |||||    
T  41640137 atagtcatagacaaattaaatgtacaatgagtttcttgcaaataacatatttatttacatttgaaaagacattattaatctattat-taaacaagcaatt 41640039  T
Q  354 atggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    || ||| ||||||| ||||| ||||  |||||  ||||| ||||||||||    
T  41640038 attgatgaaattgagttcttgaaacgtattttgtccaacgtttctaaata 41639989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 367
Target Start/End: Complemental strand, 40361197 - 40360994
Alignment:
Q  163 tgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatagtcat 261  Q
    ||||||||||||| || | ||| ||||||  ||||| |||||||| ||||  |||  |||||||||||| || || |||||||||||| | ||||||||     
T  40361197 tgattgatagatttatctttatcggtttggtacttctggtctcaacaacatttatagagaaaactttttcaacaacaaaaattatcaacaaaatagtcag 40361098  T
Q  262 aaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataa 361  Q
      ||  |||||||||| |||| |||||||||| |||||||||||||||| ||   |||||||||||||||||||||||||||| | ||||||||||||||    
T  40361097 ggac--attaaataggaaatgagtttcttgcaaataacctatttgtttagatcataaaagacattattaatctattttgtaaacagtcaattatggataa 40361000  T
Q  362 aattga 367  Q
    ||||||    
T  40360999 aattga 40360994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 178 - 323
Target Start/End: Complemental strand, 17769122 - 17768976
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  17769122 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 17769023  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  17769022 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 17768976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 13517498 - 13517644
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| ||  |||||  ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  13517498 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 13517597  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  13517598 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 13517644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 225 - 337
Target Start/End: Original strand, 34034071 - 34034183
Alignment:
Q  225 cttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagaca 324  Q
    |||||| || ||||||||||||||||| |||||||||| ||| ||||||| |  |||| |||||||||| ||||| ||||| ||||||||  ||||||||    
T  34034071 ctttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaagaca 34034170  T
Q  325 ttattaatctatt 337  Q
    |||||||||||||    
T  34034171 ttattaatctatt 34034183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 391
Target Start/End: Complemental strand, 40528255 - 40528123
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 358  Q
    |||||||| ||||| | | || || ||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||  ||||| ||| ||    
T  40528255 cataaacaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatataga 40528156  T
Q  359 taaaattgacttcttaaaacacattttaaccaa 391  Q
    |||||||| |||||| |||  ||||||| ||||    
T  40528155 taaaattggcttcttgaaatgcattttacccaa 40528123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 155 - 362
Target Start/End: Complemental strand, 19949018 - 19948812
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 254  Q
    ||||||||| |||||||| || ||||||| |||||||  | || | |||  |||||||||||| ||||||     |||| ||| ||||||||||||||||    
T  19949018 ttactacataattgataggtttatttgtaatggtttggtattttcagtcgaaataacaactat-agaaaaaaaaattaacaattaaaattatcaagacaa 19948920  T
Q  255 tagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatta 354  Q
    ||||||||||| |||||||| |  ||||  ||||||||| |||| ||| |||||||||||| | || | ||||||| || ||||||||||  || |||||    
T  19948919 tagtcataaacctattaaatggacaatgaatttcttgcaaataatctagttgtttacattggagaaaatattattattccattttgtaaacgattaatta 19948820  T
Q  355 tggataaa 362  Q
    ||||||||    
T  19948819 tggataaa 19948812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 7008942 - 7009042
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||  |||||||||||||||  ||||| ||||| |||||  |||||||    
T  7008942 ataacctatttgtgtacattggaaaaggcattattaatctattttgtaaacaatcgtttatggataaaattggtttcttgaaacagattttgtccaactt 7009041  T
Q  395 t 395  Q
    |    
T  7009042 t 7009042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 222 - 384
Target Start/End: Complemental strand, 17696012 - 17695850
Alignment:
Q  222 aaacttttttaaa-aataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaa 320  Q
    |||||||||| || |||||||||||||||||||||||||||  ||| | ||||| |  | || |||||||||| ||||| ||||| ||||||||  ||||    
T  17696012 aaacttttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaa 17695913  T
Q  321 gacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 384  Q
     |||||||||||||||| | |||| | |||||||| ||| ||||||  ||||| |||| |||||    
T  17695912 aacattattaatctattat-taaacagtcaattattgatgaaattgggttcttgaaacgcattt 17695850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 403
Target Start/End: Complemental strand, 6536689 - 6536537
Alignment:
Q  251 acaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatca 350  Q
    |||||||||  ||||| |||||| |  ||| | |||||||||| || || |||||||||| ||||||||  |||||| || |||||||| || | |||||    
T  6536689 acaatagtcgaaaacaaattaaacatataacgagtttcttgcaaattacttatttgtttagattgaaaagaacattactagtctattttatatacaatca 6536590  T
Q  351 attatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||  |||||||| |||| ||||||||  || || ||||||||||||||||    
T  6536589 attataaataaaattcactttttaaaacatgttgtacccaacttttctaaata 6536537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 42353206 - 42353304
Alignment:
Q  303 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaat 402  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||||||||| ||||| || ||||  |||| |||| |||||    
T  42353206 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaattgacttcataaaatacgttttgcccaaattttttaaat 42353303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 14521679 - 14521766
Alignment:
Q  289 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    ||||| ||||| | |||||||||||||||||| |||||| |||| |||||  |||| | ||||||||||||||||| ||||||||||||    
T  14521679 ttgcaaataacttgtttgtttacattgaaaaa-acattaataatatatttattaaacagtcaattatggataaaatagacttcttaaaa 14521766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 34033857 - 34033965
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaa 125  Q
    |||||||| |||||||||||||| || || |||||||||| ||||    |||| ||||| |||||||||||  ||||||||||| ||||| ||||| |||    
T  34033857 cccaaaaaaaatattattcttgaattagtcggtatgtattgatatctggctac-cccaattaataaacatttggctacctcaaacaagtttagttg-caa 34033954  T
Q  126 aaattagcata 136  Q
    |||||||||||    
T  34033955 aaattagcata 34033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 378
Target Start/End: Complemental strand, 3498517 - 3498434
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaac 378  Q
    ||||| |||||||||||||||||||||||| ||||| ||||||| |||   |||||||| || | |||||| |||| |||||||    
T  3498517 ataacttatttgtttacattgaaaaagacaatattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaac 3498434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 40528351 - 40528252
Alignment:
Q  36 atattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcat 135  Q
    |||||| |||| | ||||| |||||  |||||||||| ||||  || |||||||||||||||||||||| |||  || |||||||||| |||| ||||||    
T  40528351 atattaatctttaattggttggtataaatttatattcgactat-cctaaataataaacattgagctaccccaagcaaattcagttgccgaaaactagcat 40528253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 16908953 - 16908856
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    ||||||| |||| |||||||||||| | ||||| ||||| ||||||||| |  |||| | ||||||||||| ||||||||||| |||| || ||||||||    
T  16908953 gctaccccaaaaaaatattattcttcatttggttggtatatatttatatccggctac-ctcaaataataaatattgagctacc-caaacaaattcagttg 16908856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 22098932 - 22099006
Alignment:
Q  56 ggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaatta 131  Q
    |||||||||||||||||  |||| ||||||||| ||| ||||||||||| |||| ||||| ||||| | |||||||    
T  22098932 ggtatgtatttatattcggctac-cccaaataaaaaatattgagctaccccaaacaagtttagttgtcgaaaatta 22099006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 22099030 - 22099088
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaa 213  Q
    ||||||||||||||||||||  |||| ||||||||||| |||| |  ||||||||||||    
T  22099030 ttactacatgattgatagatatatttatattggtttgatactttcaatctcaataacaa 22099088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 19949089 - 19949037
Alignment:
Q  84 aataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    |||||||||||||||||||  ||||||||||| ||||| | ||||||| ||||    
T  19949089 aataataaacattgagctatttcaaataagtttagttgtcgaaaattaacata 19949037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 337
Target Start/End: Original strand, 16152081 - 16152390
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaa 125  Q
    |||||||| | |||||||||||| ||  | ||||| ||||||||| |  |||| ||||||||||||||||||||||||| |||||||||| |||||| ||    
T  16152081 cccaaaaaaagtattattcttgaattaatcggtatatatttatatccggctac-cccaaataataaacattgagctaccccaaataagtttagttgc-aa 16152178  T
Q  126 aaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaa 224  Q
    ||||||||||| ||               | |||||| |||||||||||| |||||||||||||||| | || |||||||||||||||| || | ||||     
T  16152179 aaattagcataaataataaagtaaaaaact-actacaagattgatagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaac 16152277  T
Q  225 cttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagaca 324  Q
    |||||| || || |||||||||||||||||||||| || ||| |||||| ||  |||| |||||||||| ||||| ||||| |||||||| |||||| ||    
T  16152278 ctttttcaacaacaaaaattatcaagacaatagtcgtagacaaattaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtca 16152377  T
Q  325 ttattaatctatt 337  Q
    |||||||||||||    
T  16152378 ttattaatctatt 16152390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 385
Target Start/End: Complemental strand, 17653133 - 17652926
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| ||||||  ||||||||||||| || | | ||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  17653133 tttgtattggtttgatacttcccatctcaataacaacaataaagtaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 17653034  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaa 376  Q
      |||| |||||||||| ||||||||||| || |||||  ||||||||||||||||||||| | |||| || ||||||| ||| ||||||  ||||| ||    
T  17653033 acaatgagtttcttgcaaataacctatttattaacatttgaaaagacattattaatctattat-taaacaaacaattattgatgaaattgggttcttgaa 17652935  T
Q  377 acacatttt 385  Q
    ||| |||||    
T  17652934 acatatttt 17652926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 20843258 - 20843140
Alignment:
Q  285 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 384  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||  || |||||||||||||||| |||||| |||  |||||    
T  20843258 tttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatggataaaattggcttcttgaaatgcattt 20843159  T
Q  385 taaccaacttttctaaata 403  Q
    || ||||||||| ||||||    
T  20843158 tacccaacttttttaaata 20843140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 52403338 - 52403230
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| |||||||    
T  52403338 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaactt 52403239  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  52403238 ttttaaata 52403230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 21295932 - 21296078
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||| ||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  21295932 tttgtattggtttgatacttcccgtctcagtaacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 21296031  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  21296032 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 21296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 46823804 - 46823950
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||| | |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  46823804 tttgtattggtttgatactttccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 46823903  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  46823904 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 46823950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 11028048 - 11027932
Alignment:
Q  159 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatag 257  Q
    |||| |||||||||||| |||||||||||||||| |||||| |||||||||||||| ||  ||||| |||||| ||||| ||||||| ||||||||||||    
T  11028048 tacaagattgatagatttatttgtattggtttgatacttccagtctcaataacaacaataaagaaacctttttcaaaaacaaaaattctcaagacaatag 11027949  T
Q  258 tcataaacatattaaat 274  Q
    ||||  ||| |||||||    
T  11027948 tcatggacaaattaaat 11027932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 400
Target Start/End: Original strand, 29648402 - 29648564
Alignment:
Q  240 aaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatttt 339  Q
    |||||||||||||||||||||||| || ||||||  |  |||  |||| ||||| || |  | |||||||| ||||||||||| ||||||||| |||||     
T  29648402 aaattatcaagacaatagtcataatcaaattaaacggacaataggtttattgcaaatgatttctttgtttatattgaaaaagagattattaatttattta 29648501  T
Q  340 gtaaataatca--attatggataaaattgacttcttaaaacacattttaaccaacttttctaa 400  Q
    ||||| |||||  |||||||||||||||||||||||||||  ||||||   ||||||||||||    
T  29648502 gtaaacaatcaatattatggataaaattgacttcttaaaatccattttgctcaacttttctaa 29648564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 38171472 - 38171566
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaa----ttatggataaaattgacttcttaaaacacatttt 385  Q
    ||||||||||||| || |||  |||||||||||||||||||||||||||| ||||||    ||||||||||||||||||| ||||||||||||||    
T  38171472 ataacctatttgtgtaaattagaaaagacattattaatctattttgtaaacaatcaatcatttatggataaaattgactttttaaaacacatttt 38171566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 403
Target Start/End: Original strand, 40763813 - 40763958
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||| |||||   ||||||||||    
T  40763813 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 40763912  T
Q  358 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  40763913 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 40763958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 52403449 - 52403345
Alignment:
Q  159 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaatagt 258  Q
    ||||| ||||||||||| |||||||||||||||   |||||  |||||||||||| ||| ||| |||||||| || |||||||| |||||||||||||||    
T  52403449 tacatcattgatagatttatttgtattggtttggttcttccactctcaataacaattataagagaactttttcaacaataaaaactatcaagacaatagt 52403350  T
Q  259 cataa 263  Q
    |||||    
T  52403349 cataa 52403345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 11906655 - 11906547
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    |||| |||||||| |||||||||||| | ||||||||||||||||||||||  ||| ||||| |||||||||   |||| |||||||||| | |||||||    
T  11906655 ataatctatttgtgtacattgaaaaatatattattaatctattttgtaaattgtcatttatgaataaaattgggctcttgaaacacatttcatccaactt 11906556  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  11906555 ttttaaata 11906547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 11906890 - 11906792
Alignment:
Q  30 aaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaat 129  Q
    |||| |||||||||||||  || || | ||||||| ||||| |||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  11906890 aaaaaaatattattcttgtattagttgatatgtatctatatccaacta-acctaaataataaacattgagctacctcaaacaagtttagttgccaaaaat 11906792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 19795664 - 19795745
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  19795664 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 19795745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 11906760 - 11906662
Alignment:
Q  165 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataa 263  Q
    ||||||||||| |||||||||||||||  ||||||| |||||||||||| |||  ||| ||| |||| || |||||||| ||||||||||||||||||||    
T  11906760 attgatagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaac-ttttcaacaataaaaactatcaagacaatagtcataa 11906662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 37175495 - 37175588
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacac 380  Q
    |||||||| |||| |||||| |||||||| |||||||||||| ||||||||||  |||  | | |||||||||||||||| ||||||||||||||    
T  37175495 ttcttgcaaataatctatttatttacatt-aaaaagacattaataatctatttattaatcatttaattatggataaaattaacttcttaaaacac 37175588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 35062063 - 35062153
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    ||||| || |||||||||| |||||||||||||| ||| ||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  35062063 ttcttacaaataacctatt-gtttacattgaaaa-gacgttagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 35062153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 40785772 - 40785851
Alignment:
Q  304 ttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 385  Q
    |||||||||||||||| ||||||| |||||| || | |||| ||| ||||||||||||||||||||||||||||||| ||||    
T  40785772 ttgtttacattgaaaa-gacattaataatcttttat-taaacaattaattatggataaaattgacttcttaaaacacgtttt 40785851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 3458173 - 3458029
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgga 358  Q
    |||||||| ||||||| | || || |||||||||| ||||| |||||||||||| || | |||||||||||||| ||| | |||||   |||||||| ||    
T  3458173 cataaacaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattataga 3458074  T
Q  359 taaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    ||||||||  ||||| |||   |||||| ||||| ||| ||||||    
T  3458073 taaaattggtttcttgaaatttattttacccaacctttttaaata 3458029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 35106547 - 35106470
Alignment:
Q  298 acctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    |||| ||| ||||||||||||||  ||||| ||||||||||  |||| | ||||||||||||||||||||||||||||||    
T  35106547 acctgtttctttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaattgacttcttaaaa 35106470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 36312341 - 36312269
Alignment:
Q  303 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    ||||||||||||||||||  ||||| ||||||||||  |||| | |||||||||||||||||| |||||||||||    
T  36312341 tttgtttacattgaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaa 36312269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 52403571 - 52403473
Alignment:
Q  29 aaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaa 128  Q
    ||||| |||||||||||||  || || ||||||||| ||||| || |||| || ||||||||||||||||| ||||  ||||||||||||||| ||||||    
T  52403571 aaaaataatattattcttgtattagttggtatgtatctatatccagctac-cctaaataataaacattgagataccctaaataagttcagttgtcaaaaa 52403473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 29123490 - 29123552
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 217  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  29123490 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 29123552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 19795443 - 19795538
Alignment:
Q  40 tattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||| ||||| ||||| |||||||||| | |||| || |||||||||| ||||||||||| |||| |||||  |||| | ||||||| ||||    
T  19795443 tattcttgaattggttggtatatatttatatttagctactcc-aaataataaatattgagctaccccaaacaagtttggttgtcgaaaattaacata 19795538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 40785343 - 40785397
Alignment:
Q  82 caaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||||| ||||||||||||||||||| ||  |||||| |||||| |||||    
T  40785343 caaataataaatattgagctacctcaaataaatttggttgccgaaaatttgcata 40785397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 20843337 - 20843296
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    ||||||||||||||||||||||||| |||| || ||||||||    
T  20843337 cccaaataataaacattgagctaccccaaacaaattcagttg 20843296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 31434187 - 31434259
Alignment:
Q  159 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttt 230  Q
    ||||||||||||||||| || |||||  |||||  ||||||| | ||||||||||||||  ||||||||||||    
T  31434187 tacatgattgatagatttatatgtataagtttggtacttccgatgtcaataacaactatagagaaaacttttt 31434259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 35061851 - 35061946
Alignment:
Q  40 tattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||| ||||| ||||| |||||||||| | |||| | ||||||||||| ||||||||||   |||||||||  |||| | ||||||| ||||    
T  35061851 tattcttgaattggttggtatatatttatatttagctac-ctcaaataataaatattgagctactctaaataagtttggttgtcgaaaattaacata 35061946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 40763760 - 40763816
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||||||||||||||||| | |||| || |||||||| | ||||||| ||||    
T  40763760 cccaaataataaacattgagctatcccaaacaaattcagttgtcgaaaattaacata 40763816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 161 - 403
Target Start/End: Original strand, 4435175 - 4435417
Alignment:
Q  161 catgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtc 259  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||  ||||| ||||||||| ||||||||||||| |||||||||||    
T  4435175 catgattgatagatttatttgtatttgtttgatacttccggtctcaataacaattatagagaaaccttttttaacaataaaaattatctagacaatagtc 4435274  T
Q  260 ataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggat 359  Q
    ||| | |  || ||| |  |||| |||||||| | ||||||||||| ||||||||  ||||||||||||||||||||| | |||| |  |||||||||||    
T  4435275 atagataattttaatggacaatgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagacaattatggat 4435373  T
Q  360 aaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
     ||||||| ||||| |||  ||||||  ||||| ||||||||||    
T  4435374 gaaattgagttcttgaaatgcattttgcccaacgtttctaaata 4435417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 237 - 403
Target Start/End: Complemental strand, 42799275 - 42799108
Alignment:
Q  237 taaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 336  Q
    |||||||| | ||||||||||||||||||| ||||||| |  | || |||||||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  337 tttgt-aaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    || || |||| |||||||||||||||||||| |||||| |||  ||||||| ||||||||| ||||||    
T  42799175 ttagtaaaatgatcaattatggataaaattggcttcttgaaatgcattttatccaacttttttaaata 42799108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 45656017 - 45655899
Alignment:
Q  285 tttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattt 384  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||| ||||||||| ||| || |||  |||||    
T  45656017 tttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaataaaattggctttttgaaatgcattt 45655918  T
Q  385 taaccaacttttctaaata 403  Q
    || ||||||||| ||||||    
T  45655917 tacccaacttttttaaata 45655899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 219 - 367
Target Start/End: Complemental strand, 21746285 - 21746137
Alignment:
Q  219 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaa 318  Q
    ||||||| ||||||| |||||||||| | || |||||||||||||||| |||||| ||||| |  ||||| ||||  |||| ||||| ||||||||||||    
T  21746285 agaaaacgtttttaagaataaaaattgttaaaacaatagtcataaacaaattaaacaggtagtaagtttcatgcaagtaacttatttatttacattgaaa 21746186  T
Q  319 aagacattattaatctattttgtaaataatcaattatggataaaattga 367  Q
    | |||||||||| ||||||| ||| | ||||||||| | ||||||||||    
T  21746185 atgacattattagtctatttagtatacaatcaattaagaataaaattga 21746137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 403
Target Start/End: Original strand, 16546354 - 16546499
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    |||||||| ||||||| |  | || ||||||| || ||||||||||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  16546354 cataaacaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 16546453  T
Q  358 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  16546454 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 16546499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 39070267 - 39070154
Alignment:
Q  284 gtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacat 382  Q
    |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||   |||||||||||||||||||  ||||| |||  |||    
T  39070267 gtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatggataaaattggtttcttgaaatgcat 39070168  T
Q  383 tttaaccaactttt 396  Q
    ||||  ||||||||    
T  39070167 tttacacaactttt 39070154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 403
Target Start/End: Complemental strand, 14802774 - 14802671
Alignment:
Q  301 tatttgtttacattgaaaaagacattattaatctatttt-gtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttcta 399  Q
    ||||||||||||||  |||| |||||||||||||||||| ||||| ||||||||||  ||||||||| |||||| |||| | ||||  ||||||||||||    
T  14802774 tatttgtttacattagaaaaaacattattaatctatttttgtaaacaatcaattataaataaaattggcttcttgaaacgcgttttgtccaacttttcta 14802675  T
Q  400 aata 403  Q
    ||||    
T  14802674 aata 14802671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 274
Target Start/End: Original strand, 26180634 - 26180689
Alignment:
Q  219 agaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaat 274  Q
    ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  26180634 agaaaacttttttaacaattaaaactatcaagacaatagtcataaacatattaaat 26180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 35524747 - 35524657
Alignment:
Q  289 ttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||| |||   |||||||| || | |||||| |||| ||||||||    
T  35524747 ttgcaaataacttatttgtttacattgaaaaagacattattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaaca 35524657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 396
Target Start/End: Original strand, 37614591 - 37614731
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttac---attgaaaaagacattattaatctattttgtaaataatcaattat 355  Q
    |||||||| |||||||||  | ||  ||||||||| |||||||||||||||||   |||| |||||||||||||||||||||| |||||     ||||||    
T  37614591 cataaacaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctatttagtaaacggctaattat 37614690  T
Q  356 ggataaaattgacttcttaaaacacattttaaccaactttt 396  Q
    | ||||| ||| |||||| |||  ||||||| |||||||||    
T  37614691 gaataaatttggcttcttgaaatgcattttacccaactttt 37614731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 26180446 - 26180560
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    ||||||||||||  |||||| | |||| || || |||||||||||||||  | ||||  | |||||||||| |||||||||||||||| ||||| |||||    
T  26180446 gctacccaaaaaatatattaattttgaattagttggtatgtatttatatctagctacttc-aaataataaatattgagctacctcaaacaagtttagttg 26180544  T
Q  122 -ccaaaaattagcata 136  Q
     |||||||||||||||    
T  26180545 tccaaaaattagcata 26180560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 16546285 - 16546357
Alignment:
Q  63 atttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||||  |||| |||||||||||||||||||||||||  ||| || |||||||||| ||||||| ||||    
T  16546285 atttatattcggctac-cccaaataataaacattgagctaccctaaacaaattcagttgccgaaaattaacata 16546357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 4435037 - 4435132
Alignment:
Q  22 gctacccaaaaaca-atattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttca 117  Q
    |||||||||||| | ||||||||||||| ||||| ||||||||||||||| |   ||| |  |||||||||||||||| |||||  |||||||||||    
T  4435037 gctacccaaaaaaatatattattcttgaattggtcggtatgtatttatatccggttac-cttaaataataaacattgaactaccctaaataagttca 4435132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 42799417 - 42799345
Alignment:
Q  63 atttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcat 135  Q
    ||||||||||| |||| ||||||||||||||||| ||||||  |||| || ||||||| || || ||||||||    
T  42799417 atttatattcagctacccccaaataataaacattcagctacaccaaacaaattcagtttccgaatattagcat 42799345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 229
Target Start/End: Complemental strand, 18160019 - 18159944
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaactttt 229  Q
    ||||||||||||||||||||| |||||||||  ||||| || | ||| ||||||||||| |||  |||||||||||    
T  18160019 ttactacatgattgatagatttatttgtattcatttgataccttcggcctcaataacaaatatagagaaaactttt 18159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 18161193 - 18161103
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaaaataaaaatta 245  Q
    ||||||||||||||||||||| || |||||| |||||| || | ||| ||||||||||| || |||| ||||||||  || |||||||||||    
T  18161193 ttactacatgattgatagatttatctgtattcgtttgataccttcggcctcaataacaaata-tagagaaacttttacaacaataaaaatta 18161103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 8230347 - 8230253
Alignment:
Q  165 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagt 258  Q
    ||||||||||| ||||||||| |||  | |||| ||||||||||||||| | |  |||||||||||  || |||||||||| |||| ||||||||    
T  8230347 attgatagatttatttgtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaatagt 8230253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 35524884 - 35524790
Alignment:
Q  165 attgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagt 258  Q
    ||||||||||| ||||||||| |||  | |||| ||||||||||||||| | |  |||||||||||  || |||||||||| |||| ||||||||    
T  35524884 attgatagatttatttgtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaatagt 35524790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 18308106 - 18308191
Alignment:
Q  161 catgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaatta 245  Q
    ||||||||||||||| ||||||||| |||||| || | ||  ||||||||||| |||  |||||||||||  || |||||||||||    
T  18308106 catgattgatagatttatttgtattcgtttgatacattcgacctcaataacaaatatagagaaaacttttacaacaataaaaatta 18308191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 167 - 403
Target Start/End: Complemental strand, 292425 - 292189
Alignment:
Q  167 tgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaac 265  Q
    ||||||||| |||||||||||||||| ||| ||| ||||||||||||||||  ||||  |||||| || |||||||||||||||||||||| ||||| ||    
T  292425 tgatagatttatttgtattggtttgatactcccgatctcaataacaactatagagaagcctttttcaacaataaaaattatcaagacaatattcatagac 292326  T
Q  266 atattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaatt 365  Q
    | |||||||    |||| |||||||||  ||||||||||| |||| |||  |||||||| |||||||||||| | |||| |  ||||||| ||| |||||    
T  292325 aaattaaatgaacaatgagtttcttgcgaataacctatttatttatatttgaaaagacactattaatctattat-taaacaggcaattattgatgaaatt 292227  T
Q  366 gacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |  ||||| |||||||||||  ||||| ||||||||||    
T  292226 gggttcttgaaacacattttgcccaacgtttctaaata 292189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 34659370 - 34659535
Alignment:
Q  235 aataaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatct 334  Q
    |||||||||||||||||||||||||||||||| ||||||| | ||||| |||| ||||| ||||| |||| ||||||||| ||||| |||||||||||||    
T  34659370 aataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttacatttaaaaatacattattaatct 34659469  T
Q  335 attttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaa 400  Q
    |||| ||||| | |||||||| ||||||||||  ||||| |||  ||||||  |||| ||||||||    
T  34659470 atttagtaaacactcaattatagataaaattggtttcttgaaatgcattttgtccaaattttctaa 34659535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 385
Target Start/End: Complemental strand, 48609251 - 48609044
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| || | ||||||||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  48609251 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 48609152  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaa 376  Q
      |||| |||||||||| ||||||||||| || |||||  |||| |||||||||||||||| | |||| || ||||||| ||| ||||||  ||||| ||    
T  48609151 acaatgagtttcttgcaaataacctatttattaacatttgaaaacacattattaatctattat-taaacaaacaattattgatgaaattgggttcttgaa 48609053  T
Q  377 acacatttt 385  Q
    ||| |||||    
T  48609052 acatatttt 48609044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 155 - 403
Target Start/End: Complemental strand, 29716014 - 29715766
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaa-aataaaaattatcaagaca 253  Q
    |||||||| ||| |||||||| ||||||||| |||||| |||   | ||||||||||||| ||   ||||||||||| || |||||||||||||||||||    
T  29716014 ttactacaagatggatagatttatttgtatttgtttgatactcttgatctcaataacaacaatagaaaaacttttttcaacaataaaaattatcaagaca 29715915  T
Q  254 atagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaatt 353  Q
    ||||||||| ||| ||||||| |    || |||||||| | ||||||||||| ||||||||  ||||||||||||||||||||| | |||| | || |||    
T  29715914 atagtcatagacaaattaaatggacggtgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattat-taaacagtctatt 29715816  T
Q  354 atggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    || ||| ||||||  ||||| |||| ||||||  ||||| ||||||||||    
T  29715815 attgatgaaattgggttcttgaaacgcattttgcccaacgtttctaaata 29715766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 337
Target Start/End: Original strand, 758835 - 758989
Alignment:
Q  184 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 282  Q
    ||||||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  758835 ttggtttgatacttcccgtctcaataacaacgataaagaaacctttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 758934  T
Q  283 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 337  Q
     |||||||||| |||| |||||| ||||||||  |||||||||||||||||||||    
T  758935 agtttcttgcaaataatctatttatttacatttgaaaagacattattaatctatt 758989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 184 - 337
Target Start/End: Complemental strand, 46211817 - 46211663
Alignment:
Q  184 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 282  Q
    ||||||||| |||| | |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  46211817 ttggtttgatactttccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 46211718  T
Q  283 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 337  Q
     |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  46211717 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 46211663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 25592168 - 25592276
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| |||||||    
T  25592168 ataatctatttgtgtacattgcaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatccaactt 25592267  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  25592268 ttttaaata 25592276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 323
Target Start/End: Original strand, 39719879 - 39720025
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| ||  |||||  ||||| || ||||||||| |||||||||||||||||| ||| |||||||      
T  39719879 tttgtattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgt 39719978  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagac 323  Q
      |||| |||||||||| ||||||||||| ||||||||  |||||||    
T  39719979 acaatgagtttcttgcaaataacctatttatttacatttgaaaagac 39720025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 403
Target Start/End: Original strand, 13465458 - 13465603
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  13465458 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 13465557  T
Q  358 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  13465558 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 13465603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 26 - 263
Target Start/End: Original strand, 25591924 - 25592161
Alignment:
Q  26 cccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaa 125  Q
    |||||||| |||||||||||||  || || ||||||||| ||||| || |||| ||||||||||||| ||||||||||  |||| |||||||||||||||    
T  25591924 cccaaaaaaaatattattcttgtattagttggtatgtatctatatccagctac-cccaaataataaatattgagctactccaaacaagttcagttgccaa 25592022  T
Q  126 aaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-tagaaaa 224  Q
    |||  | |||| ||               ||| ||||| ||||||||||| |||||||||| ||||  ||||||| |||||||||||| |||  ||| ||    
T  25592023 aaaacaacataaataagaaagtaaaaaaattattacatcattgatagatttatttgtattgatttggtacttccgctctcaataacaattatagagagaa 25592122  T
Q  225 cttttttaaaaataaaaattatcaagacaatagtcataa 263  Q
    |||||| || |||||||| |||||||| |||||||||||    
T  25592123 ctttttcaacaataaaaactatcaagataatagtcataa 25592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 188 - 337
Target Start/End: Complemental strand, 83768 - 83617
Alignment:
Q  188 tttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaat-aggtaatgcgt 285  Q
    ||||| |||||| |||||||||||||| || | |||| |||||| || ||||||||| |||||||||||||||||| ||| ||||||  |   |||| ||    
T  83768 tttgatacttcccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagt 83669  T
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 337  Q
    |||||| | ||||||||||| ||||||||  |||||||||||||||||||||    
T  83668 ttcttgtaaataacctatttatttacatttgaaaagacattattaatctatt 83617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 159 - 344
Target Start/End: Original strand, 37202722 - 37202908
Alignment:
Q  159 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatag 257  Q
    |||||||| |||| ||| |||| ||||||||||| ||||| | ||||||||| || |||   ||||| ||||| || | ||||| |||| ||||||||||    
T  37202722 tacatgatggataaatttatttatattggtttgatacttctgctctcaataataattatggtgaaaattttttcaacattaaaagttattaagacaatag 37202821  T
Q  258 tcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaa 344  Q
    ||||||||| ||||||| |  | |  |||||||||| |||| ||||||||||||||   |||| ||||||||||||||||| |||||    
T  37202822 tcataaacaaattaaatggacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacattattaatctatttagtaaa 37202908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 370
Target Start/End: Original strand, 17949051 - 17949259
Alignment:
Q  164 gattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaa---ttatcaagacaatagtc 259  Q
    |||||||||| | |||||||||  ||||| |||| ||||||||| || || |||| | ||||| ||||||| ||||||||   || ||||||||||| ||    
T  17949051 gattgatagacttatttgtattaatttgacactttcggtctcaacaataaatattgataaaacatttttaagaataaaaaaaattgtcaagacaatactc 17949150  T
Q  260 ataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggat 359  Q
    |  |||| || ||| || ||||| ||||||||||  |||| | ||||||||||||||| || ||||||| | |||||||  || | ||||||||||| ||    
T  17949151 a--aacaaatcaaacagataatgagtttcttgcaattaacttgtttgtttacattgaataatacattataagtctatttaatatacaatcaattatgaat 17949248  T
Q  360 aaaattgactt 370  Q
    |||||||||||    
T  17949249 aaaattgactt 17949259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 403
Target Start/End: Original strand, 28491315 - 28491460
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    |||||||| ||||||| |  | || |||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  28491315 cataaacaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 28491414  T
Q  358 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||  ||||| |||  |||||||  ||| |||| ||||||    
T  28491415 ataaaattggtttcttgaaatgcattttacacaaattttttaaata 28491460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 385
Target Start/End: Complemental strand, 4678061 - 4677983
Alignment:
Q  305 tgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 385  Q
    ||||||||||||||| ||||||| |||||| || | |||||||| ||||||||||||||||||||||||||||||| ||||    
T  4678061 tgtttacattgaaaa-gacattaataatcttttat-taaataattaattatggataaaattgacttcttaaaacacgtttt 4677983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 396
Target Start/End: Original strand, 14047053 - 14047153
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    ||||||||| |||  ||||||||||  | ||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  14047053 ataacctatatgtgcacattgaaaat-atattattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaactt 14047151  T
Q  395 tt 396  Q
    ||    
T  14047152 tt 14047153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 396
Target Start/End: Original strand, 14357083 - 14357183
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    ||||||||| |||  ||||||||||  | ||||||||||||||||||||||| ||| |||||| ||||||||  ||||| |||||||||||  |||||||    
T  14357083 ataacctatatgtgcacattgaaaat-atattattaatctattttgtaaatagtcatttatggctaaaattggtttcttgaaacacattttgtccaactt 14357181  T
Q  395 tt 396  Q
    ||    
T  14357182 tt 14357183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 45855585 - 45855676
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || |  ||| ||| ||||||||||||||||||||||||||||||    
T  45855585 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttattaaaacaattaattatggataaaattgacttcttaaaaca 45855676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 45855373 - 45855468
Alignment:
Q  40 tattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||| ||||| ||||| |||||||||| | |||| ||||||||||||| ||||||||||| ||||||||||  |||| | ||||||| ||||    
T  45855373 tattcttgaattggtcggtatatatttatatttagctac-cccaaataataaatattgagctaccccaaataagtttggttgtcgaaaattaacata 45855468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 27097112 - 27097174
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 217  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  27097112 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 27097174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 27181191 - 27181129
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 217  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  27181191 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 27181129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 37712936 - 37712998
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat 217  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||   |||||||||||||||||    
T  37712936 ttactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactat 37712998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 379
Target Start/End: Complemental strand, 40253671 - 40253593
Alignment:
Q  301 tatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    |||||||||||||||||||||||||||||| ||||||| |||   |||||||| || | |||||| |||| ||||||||    
T  40253671 tatttgtttacattgaaaaagacattattagtctatttagtatgcaatcaattctgaagaaaattaactttttaaaaca 40253593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 20926878 - 20926806
Alignment:
Q  303 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    |||||||||||| |||||  ||||| ||||||||||  |||| | |||||||||||||||||| |||||||||||    
T  20926878 tttgtttacattaaaaaa--cattaataatctatttattaaacagtcaattatggataaaatttacttcttaaaa 20926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 34658884 - 34658982
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttg 121  Q
    |||||| ||||| |||  ||||||| | ||||| |||||||||||||||||  |||| || |||||||| ||||||||||||  |||| |||||||||||    
T  34658884 gctaccaaaaaaaaattatattcttcaattggtcggtatgtatttatattccgctac-cctaaataatatacattgagctactccaaacaagttcagttg 34658982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 37049134 - 37049224
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaa 377  Q
    ||||| || ||||||||||||||||||||| |||||||||||||||||| |||  |||| | | |||||   ||||||||| ||||||||||    
T  37049134 ttcttacaaataacctatttgtttacattg-aaaagacattattaatctttttattaaacagttaattacaaataaaattggcttcttaaaa 37049224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 25439623 - 25439575
Alignment:
Q  297 aacctatttgttt-acattgaaaaagacattattaatctattttgtaaa 344  Q
    ||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  25439623 aacctatttgttttacattggaaaagacattattaatctatttagtaaa 25439575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 28491262 - 28491318
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||||||||||||||||| | |||| || |||||||||| ||||||| ||||    
T  28491262 cccaaataataaacattgagctatcccaaacaaattcagttgccgaaaattaacata 28491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 29716114 - 29716028
Alignment:
Q  51 tggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatacat 139  Q
    |||| ||||||||||| |||||  |||| ||||||||||||| ||||||||||| |||| || ||  |||| |||||||||||||||||    
T  29716114 tggtcggtatgtatttttattcggctac-cccaaataataaatattgagctaccccaaacaaatttcgttg-caaaaattagcatacat 29716028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 34659016 - 34659071
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataa 210  Q
    |||||||||||||||| |||| || | ||||||||||| |||| ||||||||||||    
T  34659016 ttactacatgattgatcgatttatatatattggtttgatactttcggtctcaataa 34659071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 25439711 - 25439655
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||||||| ||||||||||| | || || |||||||||| ||||||| ||||    
T  25439711 cccaaataataaatattgagctaccccgaacaaattcagttgccgaaaattaacata 25439655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 37003822 - 37003919
Alignment:
Q  304 ttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    ||||||||||||||| |  ||||| |||||| ||   |||| |||||| |||| |||||||| | |||||||||||| ||||  ||||||||| ||||||    
T  37003822 ttgtttacattgaaaca--cattaataatcttttcattaaacaatcaactatgaataaaattaatttcttaaaacacgttttgcccaacttttttaaata 37003919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 337
Target Start/End: Original strand, 34729775 - 34729935
Alignment:
Q  178 tttgtattggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaatag 276  Q
    ||||||||||||||| |||||| |||||||||||||| || | ||||||||||| || ||||||||| |||| ||||||||||||| |||  ||||||      
T  34729775 tttgtattggtttgatacttcccgtctcaataacaacaataacgaaaactttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgt 34729874  T
Q  277 gtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 337  Q
      |||| |||||||||| ||||||||||| || ||||| ||||||||||||||||||||||    
T  34729875 acaatgagtttcttgcaaataacctatttattaacatttaaaaagacattattaatctatt 34729935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 373
Target Start/End: Original strand, 29486376 - 29486588
Alignment:
Q  159 tacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-agaaaacttttttaaaaataaaaattatcaagacaatag 257  Q
    ||||||||||||||||| |||| |||||||| || ||||| ||||||||||| |  |||  |||||||||||  || | |||||||||| ||||||||||    
T  29486376 tacatgattgatagatttatttatattggtt-gatacttctggtctcaataatagttatagagaaaacttttc-aagagtaaaaattattaagacaatag 29486473  T
Q  258 tcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    ||||||||| ||||| | |  |||  |||||||||| |||||||||||  ||||||||||||| | |||| |||||||||| |||||   ||||||||||    
T  29486474 tcataaacaaattaattggacaata-gtttcttgcaaataacctattttcttacattgaaaaatatattaataatctatttagtaaacggtcaattatgg 29486572  T
Q  358 ataaaattgacttctt 373  Q
    ||||| ||||||||||    
T  29486573 ataaatttgacttctt 29486588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 22956752 - 22956511
Alignment:
Q  22 gctacccaaaaacaata-ttattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagtt 120  Q
    |||||||||||| |||| |||||||||  || || ||||||||| ||||| || |||| ||||||||||||| ||||||||||| |||| ||||| ||||    
T  22956752 gctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctac-cccaaataataaaaattgagctaccccaaacaagtttagtt 22956654  T
Q  121 gccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-ta 219  Q
    ||||||||| | |||| ||               ||| ||||| ||||||||||| |||||||||||||||  ||||||| |||||||||||| |||  |    
T  22956653 gccaaaaataa-cataaataagaaagtagaaaaattattacatcattgatagatttatttgtattggtttggtacttccgctctcaataacaattataga 22956555  T
Q  220 gaaaacttttttaaaaataaaaattatcaagacaatagtcataa 263  Q
    || |||||||| || |||||||| ||||||||||||||||||||    
T  22956554 gagaactttttcaacaataaaaactatcaagacaatagtcataa 22956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 263
Target Start/End: Original strand, 23831640 - 23831881
Alignment:
Q  22 gctacccaaaaacaata-ttattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagtt 120  Q
    |||||||||||| |||| |||||||||  || || ||||||||| ||||| || |||| ||||||||||||| ||||||||||| |||| ||||| ||||    
T  23831640 gctacccaaaaaaaataattattcttgtattagttggtatgtatctatatccagctac-cccaaataataaaaattgagctaccccaaacaagtttagtt 23831738  T
Q  121 gccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactat-ta 219  Q
    ||||||||| | |||| ||               ||| ||||| ||||||||||| |||||||||||||||  ||||||| |||||||||||| |||  |    
T  23831739 gccaaaaataa-cataaataagaaagtagaaaaattattacatcattgatagatttatttgtattggtttggtacttccgctctcaataacaattataga 23831837  T
Q  220 gaaaacttttttaaaaataaaaattatcaagacaatagtcataa 263  Q
    || |||||||| || |||||||| ||||||||||||||||||||    
T  23831838 gagaactttttcaacaataaaaactatcaagacaatagtcataa 23831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 184 - 337
Target Start/End: Complemental strand, 29363685 - 29363531
Alignment:
Q  184 ttggtttgaaacttccggtctcaataacaactatta-gaaaacttttttaaaaataaaaattatcaagacaatagtcataaacatattaaataggtaatg 282  Q
    ||||||||| |||| | |||||||||||||| |  | |||| |||||| || ||||||||| |||||||||||||||||| ||| |||||||    ||||    
T  29363685 ttggtttgatactttccgtctcaataacaacgacaaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 29363586  T
Q  283 cgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctatt 337  Q
     |||||||||| ||||||||||| ||||||||  |||||||||||||||||||||    
T  29363585 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctatt 29363531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 343
Target Start/End: Original strand, 24428716 - 24428907
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattagaaaacttttttaaaaataaaaattatcaagacaa 254  Q
    ||||||||||||||||| ||| |||| |||||||||||  |||| | ||| ||| |||      ||||||||||||  | | |||||||||| |||||||    
T  24428716 ttactacatgattgataaatttatttatattggtttgatccttcggatcttaatcacattgtagagaaaactttttgtacagtaaaaattattaagacaa 24428815  T
Q  255 tagtcataaacat---attaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaa 343  Q
    ||||||||||||    ||||||| |  | || |||||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  24428816 tagtcataaacaacaaattaaatggacattgagtttcttgaaaataacctatttgttaacattgaaaaagacattattaatctatttagtaa 24428907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 21216444 - 21216552
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    |||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||  ||| || || ||||||||| | |||||    
T  21216444 ataacctacttgtatacatggaaaaagacattattaatctattttgtaaatagtcatttatggataaaatttgctttttgaatcacattttatctaactt 21216543  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  21216544 ttttaaata 21216552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 22956504 - 22956396
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| | |||||    
T  22956504 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 22956405  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  22956404 ttttaaata 22956396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 23831888 - 23831996
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    |||| |||||||| ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||  ||||| |||||||||||| | |||||    
T  23831888 ataatctatttgtgtacattggaaaatatattattaatctattttgtaaatagtcatttatggataaaattgggttcttgaaacacattttatcaaactt 23831987  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  23831988 ttttaaata 23831996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 1780740 - 1780595
Alignment:
Q  259 cataaacatattaaataggtaatgcgtttcttgcagataacctatttgttt-acattgaaaaagacattattaatctattttgtaaataatcaattatgg 357  Q
    |||||||| ||||||| |  | || |||||||||| |||||| |||||||| |||||| |||||||||||||||||||||| |||||   ||||||||||    
T  1780740 cataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 1780641  T
Q  358 ataaaattgacttcttaaaacacattttaaccaacttttctaaata 403  Q
    |||||||||  ||||| |||  |||||||  |||||||| ||||||    
T  1780640 ataaaattggtttcttgaaatgcattttacacaacttttttaaata 1780595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 403
Target Start/End: Complemental strand, 31216346 - 31216241
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacattttaaccaactt 394  Q
    ||||||||||||| ||||||| |||| |   ||||||||||||||||||||| ||| ||||||||||||||| |||||| |||||||||||  ||||||     
T  31216346 ataacctatttgtgtacattggaaaata---tattaatctattttgtaaatagtcatttatggataaaattggcttcttgaaacacattttgtccaacta 31216250  T
Q  395 ttctaaata 403  Q
    || ||||||    
T  31216249 ttttaaata 31216241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 8559969 - 8559888
Alignment:
Q  295 ataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||||||||||||||||||||||||||    
T  8559969 ataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatggataaaattgacttcttaaaaca 8559888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 31216459 - 31216353
Alignment:
Q  159 tacatgattgatagattcatttgtattgg-tttgaaacttccggtctcaataacaactat-tagaaaacttttttaaaaataaaaattatcaagacaata 256  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| || |||  ||||||||||||  | | |||||| |||||||||||||    
T  31216459 tacatgattgatagatttatttgtattggttttgatacttccggttttaataataattatagagaaaactttttccacactaaaaactatcaagacaata 31216360  T
Q  257 gtcataa 263  Q
    |||||||    
T  31216359 gtcataa 31216353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 904073 - 903993
Alignment:
Q  303 tttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaacacatttt 385  Q
    ||||||||||||||||||  ||||| |||| |||||  ||||   |||||||||||||||||| ||||||||||| |||||||    
T  904073 tttgtttacattgaaaaa--cattaataatttatttattaaacggtcaattatggataaaatttacttcttaaaatacatttt 903993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 27673963 - 27674021
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaa 213  Q
    ||||||||  ||||||| ||| |||||||||||||||| |||| |||||||||||||||    
T  27673963 ttactacaaaattgatatatttatttgtattggtttgatactttcggtctcaataacaa 27674021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 379
Target Start/End: Original strand, 33224841 - 33224879
Alignment:
Q  341 taaataatcaattatggataaaattgacttcttaaaaca 379  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33224841 taaacaatcaattatggataaaattgacttcttaaaaca 33224879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 8560151 - 8560095
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    ||||||||||||| ||||||||||| ||||||||||  |||||| ||||||| ||||    
T  8560151 cccaaataataaatattgagctaccccaaataagtttggttgccgaaaattaacata 8560095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 1780793 - 1780737
Alignment:
Q  80 cccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcata 136  Q
    |||| |||||||||||||||||||| |||| || |||||||| | ||||||| ||||    
T  1780793 cccatataataaacattgagctaccccaaacaaattcagttgtcgaaaattaacata 1780737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 33224553 - 33224616
Alignment:
Q  40 tattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacc 104  Q
    ||||||| | ||||| ||||| |||||||||| | |||| ||||||||||||| |||||||||||    
T  33224553 tattcttaaattggttggtatatatttatatttagctac-cccaaataataaatattgagctacc 33224616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 38 - 274
Target Start/End: Complemental strand, 7196 - 6960
Alignment:
Q  38 attattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataagttcagttgccaaaaattagcatac 137  Q
    ||||||||| | | ||| ||||||||||||||| | ||||| |||||||||||||||||||| |||| |||| ||||||||||| | |||||||  |||     
T  7196 attattcttcaatcggtcggtatgtatttatatccgactac-cccaaataataaacattgagttaccccaaacaagttcagttgtcgaaaattaagataa 7098  T
Q  138 atnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattag-aaaacttttttaaaaa 236  Q
    ||               ||| ||| ||||||||||||| |||| ||||||||||| |||| | ||||| ||||||| |||  | |||||||| | || ||    
T  7097 ataaaaaagtaaaaatattattacgtgattgatagatttatttatattggtttgatactttcagtctcgataacaattatagggaaaactttgtcaacaa 6998  T
Q  237 taaaaattatcaagacaatagtcataaacatattaaat 274  Q
    |||||||||||||||||||||||||||||| |||||||    
T  6997 taaaaattatcaagacaatagtcataaacagattaaat 6960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 331
Target Start/End: Original strand, 6599 - 6773
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactattaga-aaacttttttaaa-aataaaaattatcaagac 252  Q
    |||||||| |||||||||||| |||||||||  ||||| |||  || ||||||||||||| | |||| |||||||||| || |||||||||||   ||||    
T  6599 ttactacaagattgatagatttatttgtatttatttgatactctcgatctcaataacaac-actagagaaacttttttcaacaataaaaatta---agac 6694  T
Q  253 aatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaa 331  Q
    |||||||||| ||| ||||||| |  ||||  ||||||||| ||||||||||| ||||||||  |||||||||||||||    
T  6695 aatagtcatagacaaattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagacattattaa 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 575 - 812
Alignment:
Q  22 gctacccaaaaacaatattattcttgagttggtaggtatgtatttatattcaactacacccaaataataaacattgagctacctcaaataa-gttcagtt 120  Q
    ||||||| |||| ||||| |||||||| ||| | ||||||||||||||| || || |  |||| ||||||||||||| |||||||||| || ||||| ||    
T  575 gctaccccaaaaaaatatcattcttgaattgatcggtatgtatttatatccagcttc--ccaagtaataaacattgaactacctcaaacaaagttcactt 672  T
Q  121 gccaaaaattagcatacatnnnnnnnnnnnnnnnttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataacaactatt-a 219  Q
    || ||||||||||||| ||                ||||| | |||||||||||| |||||||||||||||| | ||| ||||| ||||||||| ||  |    
T  673 gc-aaaaattagcataaataataaagtaaaaaaactactaaaagattgatagatttatttgtattggtttgatatttc-ggtctaaataacaacaataga 770  T
Q  220 gaaaacttttttaaaaataaaaattatcaagacaatagtcat 261  Q
    |||| |||||| || |||||||||||||||||||||||||||    
T  771 gaaacctttttcaacaataaaaattatcaagacaatagtcat 812  T

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Target: scaffold0002 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 428449 - 428333
Alignment:
Q  237 taaaaattatcaagacaatagtcataaacatattaaataggtaatgcgtttcttgcagataacctatttgtttacattgaaaaagacattattaatctat 336  Q
    |||||||||| ||||||||||| ||||||| ||||||| |  |||  ||||||| || |||| ||||||| |||||||| |||| |||||||||||||||    
T  428449 taaaaattattaagacaatagtaataaacaaattaaatggacaata-gtttcttacaaataatctatttgcttacattggaaaatacattattaatctat 428351  T
Q  337 tttgtaaataatcaatta 354  Q
    || ||||| | |||||||    
T  428350 ttagtaaacagtcaatta 428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 428604 - 428555
Alignment:
Q  82 caaataataaacattgagctacctcaaataagttcagttgccaaaaatta 131  Q
    |||||||||||||||||||||||  |||||| |||||||| |||||||||    
T  428604 caaataataaacattgagctaccctaaataaattcagttgtcaaaaatta 428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 379
Target Start/End: Original strand, 212060 - 212150
Alignment:
Q  286 ttcttgcagataacctatttgtttacattgaaaaagacattattaatctattttgtaaataatcaattatggataaaattgacttcttaaaaca 379  Q
    ||||| || |||||||||| |||||||||||||| ||||||| |||||| || | |||| ||||||||||| ||||||||||||||||||||||    
T  212060 ttcttacaaataacctatt-gtttacattgaaaa-gacattagtaatcttttat-taaacaatcaattatgaataaaattgacttcttaaaaca 212150  T

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Target: scaffold1709 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 1396 - 1451
Alignment:
Q  155 ttactacatgattgatagattcatttgtattggtttgaaacttccggtctcaataa 210  Q
    |||||||| |||||||||||| ||||||||| |||||| ||| ||| |||||||||    
T  1396 ttactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataa 1451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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