View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_21 (Length: 417)
Name: NF15777_low_21
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 293
Target Start/End: Original strand, 27612539 - 27612831
Alignment:
| Q |
7 |
tgaaatgaatcgaagaaacagcagataaagtaacaacgacaacaacaacaataagttgagagtttaaagcagctttgaatacaaaccgcggagaatgaag |
106 |
Q |
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| T |
27612539 |
tgaaatgaatccaagaaacagcagataaagtaacaacgacaacaacaacaataagttgagagtttaaagcagctttgaatacaaaccgcggagaatgaag |
27612638 |
T |
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| Q |
107 |
acgaagaagtcctaacttgttccgtttatttcgagaacgaagtgatgaagc------tgaagataaagatgtaggtggtttgagactgtggttgcaacca |
200 |
Q |
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| T |
27612639 |
acgaagaagtcctaacttgttccgtttatttggagaacgaagtgatgaagctgaagatgaagatgaagatgtaggtggtttgagactgtggttgcaacca |
27612738 |
T |
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| Q |
201 |
aggaaacttgtacgggaagaagaaacaaatagaggagaaattaatctgagagaacgttggttgctgaagagtttgttaacatccatggatgat |
293 |
Q |
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| T |
27612739 |
aggaaacttgtacgggaagaagaaacaaatagaggagaaattaatctgagagaacgttggttgctgaagagtttgttaacatccatggatgat |
27612831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 409
Target Start/End: Original strand, 27612922 - 27612956
Alignment:
| Q |
375 |
accagaggtagagaaactagttgttgctgatgatg |
409 |
Q |
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| T |
27612922 |
accagaggtagagaaactagttgttgctgatgatg |
27612956 |
T |
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