View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_22 (Length: 416)
Name: NF15777_low_22
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Complemental strand, 53677481 - 53677079
Alignment:
| Q |
14 |
gagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaacactatttgaatcttctttatc |
113 |
Q |
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| T |
53677481 |
gagaagaaatggagagaagtaggtagtgtatttagattctcatctactactacaagcgcttcttttgtactaagaaaacactatttgaatcttctttatc |
53677382 |
T |
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| Q |
114 |
attacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttatttcatttacagataatttt |
213 |
Q |
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| T |
53677381 |
attacgaacaagttcacttcttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttatttcatttacagataatttt |
53677282 |
T |
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| Q |
214 |
aaatgaaattcatgtgtgaaatattaaaactcaactctgtttgatgtatattgcagatgcattttctggtaacagtccatcgtggaaaccggaattagct |
313 |
Q |
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| T |
53677281 |
aaatgaaattcatgtgtgaaatattaaaactcaactctgtttgatgtatattgcagatgcattttctggtaacagtccatcttggaaaccggaattagct |
53677182 |
T |
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| Q |
314 |
attgttcaatattcacctaaaatggtaaattatagtgctgaatctcatgatgaaggtaatttaatggctatttattatgctaggaaagaaaataattgaa |
413 |
Q |
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| T |
53677181 |
attgttcaatattcacctaaaatggtaaattatagtgctgaatctcacgatgaaggtaatttaatggctatttattatgctaggaaagaaaataattgaa |
53677082 |
T |
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| Q |
414 |
ttt |
416 |
Q |
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| T |
53677081 |
ttt |
53677079 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 299
Target Start/End: Complemental strand, 32985248 - 32985088
Alignment:
| Q |
134 |
ttcaaagttcagggtcctgtttacaccccctcaccaggtactactgtttcactatttttattt-catttacagataattttaaatgaaattcatgtgtga |
232 |
Q |
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| T |
32985248 |
ttcaaagttcagggtcctatatacactccctcataaggtacta---tttcactgtttttctttacgtttatagatagatataaatgaacttcatgtgtac |
32985152 |
T |
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| Q |
233 |
aatattaaaactcaactctgtttgatgtatattgcagatgcattttctggtaacagtccatcgtgga |
299 |
Q |
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||| |||||||||||| ||| |||||||||||| |||| ||||||| ||||||| ||||||| |
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| T |
32985151 |
aatcccaaaactcaactcggtt---tgtatattgcaggtgcaatttctggaaacagtcactcgtgga |
32985088 |
T |
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