View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_24 (Length: 400)
Name: NF15777_low_24
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 31464318 - 31464715
Alignment:
| Q |
1 |
aggaaaacgtgaaagagaagggtctaatcttcactaacgtgaccggttaaagtacaaatt--agctgaaagaaatatttatagttaagtgtttaatgctt |
98 |
Q |
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| T |
31464318 |
aggaaaacgtgaaagagaagggtctaatcttcactaacgtgaccggttaaagtacaaattttagctgaaagaaatatttatagtta-gtgtttaatgctt |
31464416 |
T |
|
| Q |
99 |
ctcaaatgatattagtttaagtaaattaatatgtgnnnnnnngtgttcatgctcaagtatagctaattagtcttataacggctataataaatggactaaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
31464417 |
ctcaaatgatattagtttaagtaaattaatatgtgaaaaaaagttttcatgctcaagtatagctaattagtcttttaacggctataataaatggattaaa |
31464516 |
T |
|
| Q |
199 |
tgaagaaattacaagagatatgatttacatatattattctcgacgttttaaagtttttaatagatagagatacaatgtcaattccttttgatcatcttca |
298 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
31464517 |
tgaagaaattacaagagatatgacttacatatattattttcgacgctttaaagtttttaatagatagagatataatatcaatgtcttttgatcatcttca |
31464616 |
T |
|
| Q |
299 |
tcaatagatt----taactcccgacactttttcgggagtgaattctctctggcggagattcctcgagttttctacaatgaataactatatccacctttg |
393 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||| ||||||||||||||||||| |
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| T |
31464617 |
tcaatagattattattactcccgacactttttcgggagtgaattctctccggcggagatccctcgaattttctacgatgcataactatatccacctttg |
31464715 |
T |
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