View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_low_27 (Length: 378)
Name: NF15777_low_27
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 160591 - 160238
Alignment:
| Q |
1 |
ccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160591 |
ccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgtttt |
160492 |
T |
|
| Q |
101 |
gatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgtcgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
160491 |
gatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgttgg |
160392 |
T |
|
| Q |
201 |
gaaatttctctgcataacattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggattgttgattgaattgagatagacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
160391 |
gaaatttctctgcataacattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggattgttgattgaattgagatagacg |
160292 |
T |
|
| Q |
301 |
ctcatagaagaaatggaaatacctttttgtgtgttgttacaatagttgaagttc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| || | |||||||||| |
|
|
| T |
160291 |
ctcatagaagaaatggaaatacctttttttgtgttgttgcattggttgaagttc |
160238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 152156 - 151803
Alignment:
| Q |
1 |
ccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgtttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
152156 |
ccttgtgatgcttttgctgagccaagcttgtgttagaatgtaatcatcactatgtttccatctaaatgacttggattgcttgtattcatgttcatgtttt |
152057 |
T |
|
| Q |
101 |
gatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgtcgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
152056 |
gatgtatccgacttccatgaactgtttctcaacaaaagttccatgatgaaaacagcatccaacaaaattgtttccacaaatttctctttgcttatgttgg |
151957 |
T |
|
| Q |
201 |
gaaatttctctgcataacattttcttatttcttgttctttgttttcgagatagagtttgtagttcttgatcatggattgttgattgaattgagatagacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
151956 |
gaaatttctctgcataacattttcttatttgttgttctttgctttcgagatagagtttgtagatcttgatcatggattgttgattgaattgagataaacg |
151857 |
T |
|
| Q |
301 |
ctcatagaagaaatggaaatacctttttgtgtgttgttacaatagttgaagttc |
354 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| || || | |||||||||| |
|
|
| T |
151856 |
ctcatagaagaaaaggaaatacctttttttgtgttcttgcattggttgaagttc |
151803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University