View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_29 (Length: 347)
Name: NF15777_low_29
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 69 - 273
Target Start/End: Original strand, 41710724 - 41710932
Alignment:
| Q |
69 |
tttgaatgagtgtagaaaaataaaaggtgtttatttatccttgttgaattggttttaatataaagaaaaataactaaagctttaacaccaaaaaagaatt |
168 |
Q |
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| T |
41710724 |
tttgattgagtgtagaaaaataaaaggtgtttatttatccttgttgaactggttttgatataaagaaaaataactaaagctttaacaccaaaa-agaatt |
41710822 |
T |
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| Q |
169 |
aactaaagcattaaacattcctaaatcgacaatgttaatattgctacgttgaagttcaatagtttggccttgaacgcac-----catttatgtagcttgc |
263 |
Q |
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| T |
41710823 |
aactaaagcattaaacattcctaaatcgacaatgttaatattgttacgttgaagttcaatagtttggtcttgaacgcaccacttcatttatgtagcttgc |
41710922 |
T |
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| Q |
264 |
cacttcatct |
273 |
Q |
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|||||||||| |
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| T |
41710923 |
cacttcatct |
41710932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 339
Target Start/End: Original strand, 41711006 - 41711069
Alignment:
| Q |
276 |
aaaatcatataaaccccaaaacgcttttcaaatacaattttttaacctccaaaactttcatctc |
339 |
Q |
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| T |
41711006 |
aaaatcatataaaccccaaaacacttttcaaatacaattttttaacctccaaaactttcatctc |
41711069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 41710525 - 41710573
Alignment:
| Q |
18 |
atttgatagtttggtgatgtgatagaagaacatagataaaaagaatgag |
66 |
Q |
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| T |
41710525 |
atttgatagtttggtgatctgataaaagaagatagataaaaagaatgag |
41710573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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