View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_3 (Length: 870)
Name: NF15777_low_3
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 671; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 16 - 865
Target Start/End: Original strand, 49731332 - 49732168
Alignment:
| Q |
16 |
aatataaagtttctgctcatagattctttaaccaatattttcgtgagtttaaatcagttgttataaacaacgtataatatacgtaaggttcggagttcga |
115 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| ||||| ||| |||| |||||||| ||||||||| ||||||||||||||||| | |||||| |
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| T |
49731332 |
aatataaagtttctgctcatagtttctttaaccaatgttttcatgaatttagatcagttggtataaacaatacataatatacgtaaggtttgaggttcga |
49731431 |
T |
|
| Q |
116 |
acccggctnnnnnnnnnnnnnnnnntctttaaccaataccctcttgaggtagtagcggttaccaagacccagctaataaaagtctaatacaagcaatggt |
215 |
Q |
| |
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|| | || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49731432 |
actcaactacaaaaa----------tctttaaccaatacc---ttgaggtac---cggttaccaagacccagctaataaaagtctaatacaagcaatggt |
49731515 |
T |
|
| Q |
216 |
ggcctaaccaaaaatgagaggcaaaggtaaggataaaatagtctttgatctcaacatcgcattaaaaagttaccataagtaatcatttaagctgccgcaa |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49731516 |
ggcctaaccaaaaatgagagccaaaggtaaggataaaatagtctttgacctcaacatcgcattaaaaagttaccataagtaatcatttaagctgccgcaa |
49731615 |
T |
|
| Q |
316 |
cgtgtcatctcagtacaacagttttccgttaaacctctacgttttttaacctacccatcttcattaccctttaagccctttcattttcacattaattaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49731616 |
cgtgtcatctcagtacaacagttttccgttaaacctctacgttttttaacctacccatcttcattaccctttaagccctttcattttcacattaattaca |
49731715 |
T |
|
| Q |
416 |
aacttaacactcttctctctacacatttcacaacaacgctctcacaacgttattattcactctcacttcttcctctctctgcaacaatggctccaacact |
515 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49731716 |
aacttaacacgcttctctctacacatttcacaacaacgctctcacaacgttattattcactctcacttcttcctctctctgcaacaatggctccaacact |
49731815 |
T |
|
| Q |
516 |
ctcacccctca---ttcttcttcttcttctgctttcccattttgtcctcattgttcaatcttctgtaaacccagattacgaacctcttctgaccttcaaa |
612 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49731816 |
ctcacccctcattcttcttcttcttcttctgctttcccattttgtcctcattgttcaatcttctgtaaacccagattacgaacctcttctgaccttcaaa |
49731915 |
T |
|
| Q |
613 |
accggttcagacccatccaacaagctcacaacatggaaaaccaacaccgacccatgcacttggaccggcgtttcatgtgtcaaaaaccgagtcactcgac |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49731916 |
accggttcagacccatccaacaagctcacaacatggaaaaccaacaccgacccatgcacttggaccggcgtttcatgtgtcaaaaaccgagtcactcgac |
49732015 |
T |
|
| Q |
713 |
tcattctcgaaaatctcaacctccaaggcggcaccatcgaacccttaacctcactgactcagctccgagttttgagtctcaaaggaaaccgcttttccgg |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49732016 |
tcattctcgaaaatctcaacctccaaggcggcaccatcgaacccttaacctcactaactcagctccgagttttgagtctcaaaggaaaccgcttttccgg |
49732115 |
T |
|
| Q |
813 |
ttcacttccaaacctctccaacttcacttccctcaagcttctcttcttctctc |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49732116 |
ttcacttccaaacctctccaacttcacttccctcaagcttctcttcttatctc |
49732168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 51046140 - 51046201
Alignment:
| Q |
56 |
tcgtgagtttaaatcagttgttataaacaacgtataatatacgtaaggttcggagttcgaac |
117 |
Q |
| |
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|||||||||||| ||||||| ||| ||||| |||| ||| |||||||||||||||||||| |
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| T |
51046140 |
tcgtgagtttaactcagttggtatgaacaatacataaaatatgtaaggttcggagttcgaac |
51046201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 20469374 - 20469311
Alignment:
| Q |
56 |
tcgtgagtttaaatcagttgttataaacaacgtataatatacgtaaggttcggagttcgaaccc |
119 |
Q |
| |
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||||||| ||| |||||||| ||||||||| | |||||||| | |||||||||||||||||||| |
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| T |
20469374 |
tcgtgagcttagatcagttggtataaacaatgcataatatatgcaaggttcggagttcgaaccc |
20469311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 36981013 - 36981055
Alignment:
| Q |
77 |
tataaacaacgtataatatacgtaaggttcggagttcgaaccc |
119 |
Q |
| |
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|||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
36981013 |
tatagacaatgtataatatatgtaaggttcggagttcgaaccc |
36981055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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