View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_31 (Length: 341)
Name: NF15777_low_31
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 2160254 - 2159943
Alignment:
| Q |
17 |
agtttatcccatttcaccaagtgaaatcttgctcaaactcgatgcaaactctgatttcacnnnnnnnn------tagtttaccaccaaggtaacactaaa |
110 |
Q |
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| T |
2160254 |
agtttatcccatttcaccgagtgaaatctcgctcaaactcgatgcaaactccgatttcacaaaaaaaaaaaaaatagtttaccaccaaggtaacactaaa |
2160155 |
T |
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| Q |
111 |
ttcacatttaaaaacagaaactcgagtgagttgggcagttaacgtagagtttgagaacacgggtcttcaatcaatatttacttaaagctgctctaatcta |
210 |
Q |
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| T |
2160154 |
ttcacatttaaaaacataaactcgagtgagttgggcagttaacgtagagtttgagaacacgggtcttcaatcaatatttacttaaagctgctctaa---- |
2160059 |
T |
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| Q |
211 |
tctagcattacaagcataagaatcgaagaacaagtgattctaatggttgaatctaagtccttttatgatccaattaaccgaaggtattttatctctttaa |
310 |
Q |
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| T |
2160058 |
tctagcattacaagcataagaatcgaagaacaagtgattctaatggttgaatctaagtccttttatgatccagttaaccgaaggtattttatctctttaa |
2159959 |
T |
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| Q |
311 |
tttatcctcatcctat |
326 |
Q |
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| T |
2159958 |
tttatcctcatcctat |
2159943 |
T |
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