View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_33 (Length: 330)
Name: NF15777_low_33
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 53677108 - 53676804
Alignment:
| Q |
15 |
attattctaggaaagaaaataattgaatttaaattaagggaaagtagatattgaaattaaagaataggaatcaggattaggatgaatatttcaatttcat |
114 |
Q |
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| T |
53677108 |
attatgctaggaaagaaaataattgaatttaaattaagggaaagtagatattgaaattaaagaataggaatcaggattaggatgaatatttcaatttcat |
53677009 |
T |
|
| Q |
115 |
tttagagtttagacaatttgttgaatctatactctgtatgt----ctttaacacaatttaatttaatgttactcattactcatttgtgattctactaagg |
210 |
Q |
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| T |
53677008 |
tttagagtttagacaatttgttgaatctatattctgtatgtatgtcttgaacacaatttaatttaatgttactcattactcatttgtgattctactaagg |
53676909 |
T |
|
| Q |
211 |
aatgtgtttgttgaaatgctgctaagaattgaaagttggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgtag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53676908 |
aatgtgtttgttgaaatgctgctaagaattgaaagttggttaagaacgaaagtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgtag |
53676809 |
T |
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| Q |
311 |
aaaat |
315 |
Q |
| |
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||||| |
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| T |
53676808 |
aaaat |
53676804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 211 - 315
Target Start/End: Complemental strand, 34131280 - 34131175
Alignment:
| Q |
211 |
aatgtgtttgttgaaatgctgctaagaattgaaagttggttaagaacg-aaagtagtttatgatgttaaggaattgtaatttgaaatgaataatgatgta |
309 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||| || |
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| T |
34131280 |
aatgtgtttgttgtaatgctgctaagagttgaaagttggttaagaacgaaaagtaatttatgatgctaacgaattgtaatttgaaatgaataatgattta |
34131181 |
T |
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| Q |
310 |
gaaaat |
315 |
Q |
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|||||| |
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| T |
34131180 |
gaaaat |
34131175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 101 - 215
Target Start/End: Complemental strand, 34139310 - 34139200
Alignment:
| Q |
101 |
tatttcaatttcatttt-agagtttagacaatttgttgaatctatactctgtatgtctttaacacaatttaatttaatgttactcattactcatttgtga |
199 |
Q |
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||||||||||| ||||| ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34139310 |
tatttcaattttatttttagagtttagacaacttgttgaatctatattttgtatgtctttaacacaatttaattta-----actcattactcatttgtga |
34139216 |
T |
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| Q |
200 |
ttctactaaggaatgt |
215 |
Q |
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|||| |||||||||| |
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| T |
34139215 |
ttcttataaggaatgt |
34139200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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