View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15777_low_36 (Length: 313)
Name: NF15777_low_36
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 31464249 - 31463954
Alignment:
| Q |
1 |
ggggcaaagtgggccatgccaccctatttcgaccaggatgtgatgtatataacctaaacctacaatatgccagaaaattaagaataaaaacccaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31464249 |
ggggcaaagtgggccatgccaccctatttcgaccaggatgtgatgtatataacctaaacctacaatatgccagaaaattaagaataaaaacccaaaaact |
31464150 |
T |
|
| Q |
101 |
gggttcaaaatgatcaccaaccattcgttttattaatgttatccggacaggtcattaacgctattcagggaattaaattaatgtatgttaggtgacatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31464149 |
gggttcaaaatgatcaccaaccattcgttttattaatgttatccggacaggtcattaacgctattcagggaattaaattaatgtatgttaggtgacatta |
31464050 |
T |
|
| Q |
201 |
ttaaaatataatccataatcaagctgcaaagtatattaattcaaagcgtttttatcacaaggatattatagtaatggcttgttacaagcatgtaaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31464049 |
ttaaaatataatccataatcaagctgcaaagtatattaattcaaggcttttttatcacaaggatattatagtaatggcttgttacaagcatgtaaa |
31463954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University