View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_low_4 (Length: 729)

Name: NF15777_low_4
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_low_4
NF15777_low_4
[»] chr4 (4 HSPs)
chr4 (18-417)||(5452980-5453378)
chr4 (423-719)||(5454071-5454367)
chr4 (471-575)||(30176365-30176469)
chr4 (434-495)||(27707845-27707906)
[»] chr3 (16 HSPs)
chr3 (423-719)||(925583-925879)
chr3 (423-719)||(44702973-44703269)
chr3 (423-589)||(24758985-24759151)
chr3 (423-589)||(24826863-24827029)
chr3 (424-558)||(33648375-33648509)
chr3 (423-589)||(37984709-37984875)
chr3 (423-589)||(53024890-53025056)
chr3 (467-575)||(13364198-13364306)
chr3 (465-549)||(21037162-21037246)
chr3 (467-618)||(46921626-46921775)
chr3 (423-594)||(18986333-18986504)
chr3 (423-589)||(17689293-17689459)
chr3 (423-589)||(31687494-31687660)
chr3 (449-558)||(20370786-20370895)
chr3 (449-513)||(46590842-46590906)
chr3 (465-549)||(46832494-46832578)
[»] chr5 (6 HSPs)
chr5 (423-719)||(43026466-43026762)
chr5 (423-589)||(30442893-30443059)
chr5 (467-589)||(22003049-22003171)
chr5 (449-555)||(37714174-37714280)
chr5 (467-534)||(7472560-7472627)
chr5 (469-530)||(9463572-9463633)
[»] scaffold0007 (1 HSPs)
scaffold0007 (467-619)||(79276-79428)
[»] chr7 (12 HSPs)
chr7 (423-589)||(14231836-14232002)
chr7 (431-553)||(11002996-11003118)
chr7 (423-589)||(26906764-26906930)
chr7 (465-556)||(44117826-44117917)
chr7 (423-589)||(1264560-1264726)
chr7 (480-578)||(21314400-21314498)
chr7 (424-589)||(48847212-48847377)
chr7 (434-558)||(34577192-34577316)
chr7 (459-558)||(22368168-22368267)
chr7 (423-501)||(30068107-30068185)
chr7 (480-558)||(40674471-40674549)
chr7 (423-501)||(45137779-45137857)
[»] chr6 (10 HSPs)
chr6 (423-531)||(22390029-22390137)
chr6 (423-531)||(30775426-30775534)
chr6 (500-590)||(26533381-26533471)
chr6 (487-609)||(9853274-9853395)
chr6 (423-589)||(31891479-31891645)
chr6 (467-618)||(32263099-32263251)
chr6 (449-555)||(4439956-4440062)
chr6 (434-495)||(2736627-2736688)
chr6 (449-513)||(4095981-4096045)
chr6 (424-535)||(21999415-21999526)
[»] chr1 (3 HSPs)
chr1 (423-589)||(25226606-25226773)
chr1 (470-558)||(47742018-47742106)
chr1 (470-519)||(38685384-38685433)
[»] chr8 (5 HSPs)
chr8 (423-609)||(18850850-18851031)
chr8 (467-618)||(35615191-35615341)
chr8 (425-607)||(43382483-43382665)
chr8 (467-558)||(16804720-16804811)
chr8 (467-588)||(31378870-31378991)
[»] chr2 (1 HSPs)
chr2 (467-534)||(12742644-12742711)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 5452980 - 5453378
Alignment:
Q  18 ttgttcatgaagctccttatatatatggtgatacatttagatatttggatcatcactaccgaaaaataattagaaccacccttcttaacacaatacaatc 117  Q
    |||||| ||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5452980 ttgttcctgatgctccttatataaatggtgatacatttagctatttggttcatcactaccgaaaaataattagaaccagccttcttaacacaatacaatc 5453079  T
Q  118 tactcaaatcaaaatggcccctataaccacacctattgccgccattttagcagggaagattaacattaagatccactgtcgcgtaatccacatgtggaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5453080 tactcaaatcaaaatggcccctataaccacacctattgccgccattttagcagggaagattaacattaagatccactgtcgcgtcatccacatgtggaca 5453179  T
Q  218 gttcctgattacaacaatccgactgaagacggttgcatgcacatgttgctacttgatgaaaaggtacattagttagtttcctaccatgataagttgnnnn 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||        
T  5453180 gttcctgattacaacaatccgaatgaagacggttgcatgcacatgttgctacttgatgaaaaggtacattagttagtttcctaccagcataagttg-ttt 5453278  T
Q  318 nnnncacatgttatagctttacatttctttggttctattgtataactttgccagcgttcttcttaaacagaatgggaggattcaggcatctgcaagaaaa 417  Q
        |||||||||||||||||||||| |||||||| |||||||||||||| ||||||  |||||||||| || |||| ||||||||||||||||| ||||    
T  5453279 ttttcacatgttatagctttacatttatttggttcaattgtataactttgtcagcgtgtttcttaaacaaaaagggaagattcaggcatctgcaaaaaaa 5453378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 423 - 719
Target Start/End: Original strand, 5454071 - 5454367
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454071 gaattccttttaaatttcaacgccgacagttccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 5454170  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 622  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||| |||||  ||    
T  5454171 ttaccttccacaaccagtattctctcatggtcaactctatgtagccatatcaagggttacatcaaggaaaggacttaaaattttgttgttggatgaacac 5454270  T
Q  623 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 719  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
T  5454271 ggttgctgcattgatagtaccaataatgttgttttcaacgagatttttcgtaacgtttagttaatttcactctgtttatttatctgttctgtttcat 5454367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 575
Target Start/End: Complemental strand, 30176469 - 30176365
Alignment:
Q  471 ttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccat 570  Q
    |||||||||| || |||||||||||  | || ||||||||||| |||||||| || ||| ||||| |||| ||||| ||||||||||| || || || ||    
T  30176469 ttgcaatgactattaacaaaagtcaaagacaatcactcaaacaagttggcatatatctttcacaatcagtgttctcgcatggtcaactgtatgttgcgat 30176370  T
Q  571 atcaa 575  Q
    |||||    
T  30176369 atcaa 30176365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 495
Target Start/End: Complemental strand, 27707906 - 27707845
Alignment:
Q  434 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 495  Q
    ||||| |||||| | ||||| |||||||||| ||||||||||||||| ||||| || |||||    
T  27707906 aaattccaacgtaggcagtttcctatatctacttgttttgcaatgacaatcaataagagtca 27707845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 423 - 719
Target Start/End: Original strand, 925583 - 925879
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  925583 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcaatcactcaaacaggttggcat 925682  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 622  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  925683 ttaccttccacaaccagtattctatcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaaaac 925782  T
Q  623 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  925783 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 925879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 423 - 719
Target Start/End: Complemental strand, 44703269 - 44702973
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44703269 gaattccttttaaatttcaacgtcgacaattccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgacat 44703170  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 622  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||  ||    
T  44703169 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaatggctgaatattttgctgttggatgaacac 44703070  T
Q  623 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 719  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||| |||||| ||||||    
T  44703069 ggttgctgcattgataataccaataatgttgttttcaaggagatttttcgtaacggttagttaatttcactctgtttatttatttgttctatttcat 44702973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 423 - 589
Target Start/End: Complemental strand, 24759151 - 24758985
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24759151 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24759052  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24759051 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24758985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 24826863 - 24827029
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24826863 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24826962  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24826963 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 424 - 558
Target Start/End: Complemental strand, 33648509 - 33648375
Alignment:
Q  424 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 523  Q
    ||||||||| |||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||     
T  33648509 aattcctttcaaatttcaacgtagtcagtttcctatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacatc 33648410  T
Q  524 taccttccacaaccagtattctctcatggtcaact 558  Q
    || ||||||||| | || ||||| ||||| |||||    
T  33648409 tatcttccacaatcggtcttctcacatggacaact 33648375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 37984709 - 37984875
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  37984709 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 37984808  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | ||  |||| ||||| || || || || || |||||| | ||||||||||||    
T  37984809 ctatcttccacaatcggtcgtctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 37984875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 423 - 589
Target Start/End: Complemental strand, 53025056 - 53024890
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||  | || || ||||||||| | |||||| ||||||| || |||||||||||||| || ||||| || || |||| |||    
T  53025056 gaattcctttcaaatttcaacgcagacaatttcctatatctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttgacat 53024957  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  53024956 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcacgtgttacatcaagg 53024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 467 - 575
Target Start/End: Complemental strand, 13364306 - 13364198
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 566  Q
    |||||||||||||  || ||||||||||| ||||||||||| ||||| |||| ||| || |||||| |  || | ||||| |||||||||||||| ||||    
T  13364306 tgttttgcaatgattattaacaaaagtcaagggcagtcactaaaacaagttgacatatatcttccaaaggcaattttctcgcatggtcaactctatgtag 13364207  T
Q  567 ccatatcaa 575  Q
    | |||||||    
T  13364206 caatatcaa 13364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 465 - 549
Target Start/End: Complemental strand, 21037246 - 21037162
Alignment:
Q  465 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 549  Q
    ||||||||||||||||||| ||||||| |||||| || ||| | ||||| |||||||| ||||| |||||| | |||||||||||    
T  21037246 tttgttttgcaatgaccattaacaaaactcagggtcaatcattaaaacaagttggcatctacctaccacaatctgtattctctca 21037162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 467 - 618
Target Start/End: Complemental strand, 46921775 - 46921626
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 566  Q
    ||||||||||||||||||||| ||||| | ||||||||||| || ||| |||| || ||||||| |||    || ||||   |||||||||| || ||||    
T  46921775 tgttttgcaatgaccatcaactaaagttaagggcagtcactaaatcagattggtatataccttctaca--ttgtgttcttaaatggtcaactttatgtag 46921678  T
Q  567 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 618  Q
    | |||||||||||| | ||||| || ||  ||||||||||||| ||||||||    
T  46921677 caatatcaagggttgcctcaagaaatggtttgaaaattttgctattagatga 46921626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 594
Target Start/End: Complemental strand, 18986504 - 18986333
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||  |||  ||||||||||| |||||||||||||| ||||| ||| | ||| | |||||  |    
T  18986504 gaattccatttaagtttcagcgtcgacagttccctatatcggtttcatttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagt 18986405  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagg 594  Q
     |||||||| ||||| || || || || || ||||| || || ||  | ||||| ||||||||||| |||||    
T  18986404 ataccttcctcaaccggttttttcccacggacaactatatgttgcggtgtcaagagttacatcaagaaaagg 18986333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 17689293 - 17689459
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||| ||| |||||||||||  | |||||  ||||| || | ||||||||||||||||| |||||||||||||| || ||||| || || ||||| ||    
T  17689293 gaattcgtttcaaatttcaacgcagacagtttactatagctttgtgttttgcaatgaccataaacaaaagtcagggacaatcacttaagcaagttgggat 17689392  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | || ||||| ||||| || || || || || ||||||   ||||||||||||    
T  17689393 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacatgttacatcaagg 17689459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 31687494 - 31687660
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||  | |||||  ||||| || | ||||||||||| || || |||||||||||||| |  ||||| || || |||| |||    
T  31687494 gaattcctttcaaatttcaacgcagacagttttctatagctttgtgttttgcaatcactataaacaaaagtcagggacgatcacttaagcaagttgacat 31687593  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| |||| ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31687594 ctatcttccacaatcagtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 449 - 558
Target Start/End: Complemental strand, 20370895 - 20370786
Alignment:
Q  449 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 548  Q
    ||||| ||||||||| |||||||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| ||||| || |||||||    
T  20370895 cagtttcctatatctgtttgttttgcaatgacaatcaacaagagtcaaggacaatcattgaaagaagttgctgtctaccttcctcaacccgtgttctctc 20370796  T
Q  549 atggtcaact 558  Q
    ||||||||||    
T  20370795 atggtcaact 20370786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 513
Target Start/End: Complemental strand, 46590906 - 46590842
Alignment:
Q  449 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 513  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  46590906 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 46590842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 549
Target Start/End: Complemental strand, 46832578 - 46832494
Alignment:
Q  465 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 549  Q
    |||||||||| |||||||| |||||| ||||  | || ||||| |||||||||||||| ||||| |||||| || | ||||||||    
T  46832578 tttgttttgctatgaccattaacaaacgtcaatgtcaatcactaaaacaggttggcatctacctaccacaatcaatcttctctca 46832494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 423 - 719
Target Start/End: Complemental strand, 43026762 - 43026466
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  43026762 gaattccttttaaatttcaacgtcgacagttccctatatttgtttgttttgcaatgaacattaacaaaagtcaggggcagtcactcaagcaggttggcat 43026663  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 622  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  43026662 ttacattctacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaacac 43026563  T
Q  623 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcat 719  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| ||||||||    
T  43026562 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaacgtttagttaatttcactctgtttatttatctgttatgtttcat 43026466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 423 - 589
Target Start/End: Complemental strand, 30443059 - 30442893
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| ||  | ||||||||    
T  30443059 gaattcctttcaaatttcaacgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagtaagttggcat 30442960  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  30442959 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 30442893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 589
Target Start/End: Complemental strand, 22003171 - 22003049
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 566  Q
    |||||||||||||| || ||||||||||| || || ||||| || || |||||||| || ||||||||| | || ||||| ||||| || || || || |    
T  22003171 tgttttgcaatgactataaacaaaagtcaaggacaatcacttaagcaagttggcatctatcttccacaatcggtcttctcacatggacagctatatgttg 22003072  T
Q  567 ccatatcaagggttacatcaagg 589  Q
    | |||||| | ||||||||||||    
T  22003071 caatatcacgcgttacatcaagg 22003049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 555
Target Start/End: Complemental strand, 37714280 - 37714174
Alignment:
Q  449 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 548  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  37714280 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcatggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 37714181  T
Q  549 atggtca 555  Q
    |||||||    
T  37714180 atggtca 37714174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 534
Target Start/End: Complemental strand, 7472627 - 7472560
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 534  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  7472627 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 7472560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 530
Target Start/End: Original strand, 9463572 - 9463633
Alignment:
Q  469 ttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 530  Q
    ||||||||||||||| ||||||||||| | ||||||||| ||| | |||| ||| |||||||    
T  9463572 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttgacatataccttc 9463633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 467 - 619
Target Start/End: Complemental strand, 79428 - 79276
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 566  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||| ||||  ||||||||||| || ||||    
T  79428 tgttttgcaatgactatgaacaaaagtcaagggcagtcactcaaacaagttgacatatatcttccacaaccagtgttcttgcatggtcaactttatgtag 79329  T
Q  567 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgat 619  Q
    | |||||| | ||||| |||||||| || |||||||||| |||  ||||||||    
T  79328 caatatcaggagttacttcaaggaatggtctgaaaatttcgctaatagatgat 79276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 14231836 - 14232002
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  14231836 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 14231935  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  14231936 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 14232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 431 - 553
Target Start/End: Complemental strand, 11003118 - 11002996
Alignment:
Q  431 tttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 530  Q
    ||||||||||||||| | ||||| ||| ||||  | |||||||||||||| |||||||| ||||| || || |||||||||||  ||||  | |||||||    
T  11003118 tttaaatttcaacgtaggcagtttcctctatcagtatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaaattggtgtgtaccttc 11003019  T
Q  531 cacaaccagtattctctcatggt 553  Q
    | ||||| |||||||||||||||    
T  11003018 ctcaacccgtattctctcatggt 11002996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 423 - 589
Target Start/End: Complemental strand, 26906930 - 26906764
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || || ||||||||||| || ||||| || || ||| ||||    
T  26906930 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaataaaagtcagggacaatcacttaagcaagttagcat 26906831  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  26906830 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 26906764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 465 - 556
Target Start/End: Original strand, 44117826 - 44117917
Alignment:
Q  465 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaa 556  Q
    ||||||||||||||||||| |||||||| || ||||| ||| | ||| | |||||||| ||||| |||||| | |||||||| || ||||||    
T  44117826 tttgttttgcaatgaccattaacaaaagccaagggcaatcattaaaataagttggcatctacctaccacaatctgtattctcccacggtcaa 44117917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 1264560 - 1264726
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |    
T  1264560 gaattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggctt 1264659  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  1264660 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 1264726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 578
Target Start/End: Complemental strand, 21314498 - 21314400
Alignment:
Q  480 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaaggg 578  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||||| ||||||||||    
T  21314498 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaatatcaaggg 21314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 589
Target Start/End: Complemental strand, 48847377 - 48847212
Alignment:
Q  424 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 523  Q
    ||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |     
T  48847377 aattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcttc 48847278  T
Q  524 taccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
    || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  48847277 tatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 48847212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 434 - 558
Target Start/End: Original strand, 34577192 - 34577316
Alignment:
Q  434 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccac 533  Q
    ||||| |||||| | ||||| ||||||||| ||| |||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| |    
T  34577192 aaattccaacgtaggcagtttcctatatctgtttattttgcaatgacaatcaacaagagtcaaggacaatcattaaaagaagttgatgtctaccttcctc 34577291  T
Q  534 aaccagtattctctcatggtcaact 558  Q
    |||  || |||||||||||||||||    
T  34577292 aactcgtgttctctcatggtcaact 34577316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 558
Target Start/End: Original strand, 22368168 - 22368267
Alignment:
Q  459 tatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 558  Q
    ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||||||| ||||    
T  22368168 tatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctcatggtaaact 22368267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 501
Target Start/End: Original strand, 30068107 - 30068185
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 501  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  30068107 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 30068185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 480 - 558
Target Start/End: Complemental strand, 40674549 - 40674471
Alignment:
Q  480 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 558  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||||||| | ||||| |||||||||||    
T  40674549 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacaaccaatgttctcacatggtcaact 40674471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 423 - 501
Target Start/End: Original strand, 45137779 - 45137857
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 501  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  45137779 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 45137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 423 - 531
Target Start/End: Complemental strand, 22390137 - 22390029
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    ||||| ||||||||||||||||||| |||||| |||||| | | | |||||| |||||||| || |||||||| || |||||||| ||| | ||||||||    
T  22390137 gaatttcttttaaatttcaacgtcgacagttcgctatatttgtatcttttgcgatgaccattaataaaagtcaaggacagtcactaaaataagttggcat 22390038  T
Q  523 ttaccttcc 531  Q
     ||||||||    
T  22390037 ataccttcc 22390029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 423 - 531
Target Start/End: Original strand, 30775426 - 30775534
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||||||||| |||||  |  |||| ||||||  | ||||||||||||||| ||||||||||| ||| |||||||||||||| || ||||||||    
T  30775426 gaattccttttaaattccaacgctgagagtttcctatagatgtttgttttgcaatgatcatcaacaaaaatcaagggcagtcactcaagcaagttggcat 30775525  T
Q  523 ttaccttcc 531  Q
     || |||||    
T  30775526 atatcttcc 30775534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 500 - 590
Target Start/End: Original strand, 26533381 - 26533471
Alignment:
Q  500 cagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagga 590  Q
    |||||||||||||| |||||  | ||||||| |||||| |||||||||||||||||||  || || || ||||||||||||| ||||||||    
T  26533381 cagtcactcaaacaagttggtgtataccttctacaacccgtattctctcatggtcaacattatgttgcaatatcaagggttatatcaagga 26533471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 609
Target Start/End: Original strand, 9853274 - 9853395
Alignment:
Q  487 caaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatca 586  Q
    ||||||||| || |||||||||||| | |||||||| || ||||||||||| || ||||| ||||  ||||| || ||||| ||||| || ||||| |||    
T  9853274 caaaagtcaaggacagtcactcaaataagttggcatatatcttccacaacc-gtgttctcgcatgaacaactttatgtagcaatatcgagagttacttca 9853372  T
Q  587 aggaaagggctgaaaattttgct 609  Q
    ||| | || ||||||||||||||    
T  9853373 agggatggcctgaaaattttgct 9853395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 589
Target Start/End: Complemental strand, 31891645 - 31891479
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    |||||||||| |||||||| ||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || | ||||||    
T  31891645 gaattcctttcaaatttcaccgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaaggtggcat 31891546  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31891545 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31891479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 467 - 618
Target Start/End: Original strand, 32263099 - 32263251
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctct-catggtcaactctacgta 565  Q
    ||||||| |||||| || ||||||| ||| |||||||||| |||||| || ||||| || || ||||||||||| || | | ||| ||||||| || |||    
T  32263099 tgttttgtaatgactattaacaaaaatcaagggcagtcacgcaaacaagtaggcatatatctcccacaaccagttttttttgcattgtcaactttatgta 32263198  T
Q  566 gccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 618  Q
    || |||||||| ||||| |||| ||  ||  |||||||||||||  |||||||    
T  32263199 gcaatatcaagagttacttcaatgagtggtttgaaaattttgctaatagatga 32263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 449 - 555
Target Start/End: Original strand, 4439956 - 4440062
Alignment:
Q  449 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 548  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  4439956 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 4440055  T
Q  549 atggtca 555  Q
    |||||||    
T  4440056 atggtca 4440062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 2736627 - 2736688
Alignment:
Q  434 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 495  Q
    ||||| |||||| | ||||| ||||||||| |||||||||||||||| |||||||| |||||    
T  2736627 aaattccaacgtaggcagtttcctatatctgtttgttttgcaatgacaatcaacaagagtca 2736688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 513
Target Start/End: Original strand, 4095981 - 4096045
Alignment:
Q  449 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 513  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  4095981 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 4096045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 535
Target Start/End: Complemental strand, 21999526 - 21999415
Alignment:
Q  424 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 523  Q
    ||||||||| |||||||||||  | || || |||||| || | |||||| ||||||| || |||||||||||||| || ||||| || || ||| ||||     
T  21999526 aattcctttcaaatttcaacgcagacaatttcctatagctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttagcatc 21999427  T
Q  524 taccttccacaa 535  Q
    || |||||||||    
T  21999426 tatcttccacaa 21999415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 423 - 589
Target Start/End: Original strand, 25226606 - 25226773
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccat-caacaaaagtcaggggcagtcactcaaacaggttggca 521  Q
    |||||||||| |||||||||||| | ||||| |||||| || | |||||||||||||| ||  || ||||||||||| || ||||| || || |||||||    
T  25226606 gaattcctttcaaatttcaacgtagacagtttcctatagctttgtgttttgcaatgactataaaaaaaaagtcagggacaatcacttaagcaagttggca 25226705  T
Q  522 tttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 589  Q
    | || ||||||||||| || ||||| ||||| ||  | || || || |||||| | ||||||||||||    
T  25226706 tctatcttccacaaccggtcttctcacatgggcagttatatgttgcaatatcacgtgttacatcaagg 25226773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 558
Target Start/End: Original strand, 47742018 - 47742106
Alignment:
Q  470 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 558  Q
    ||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| ||||||||||||||||||||    
T  47742018 tttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtattctctcatggtcaact 47742106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 519
Target Start/End: Original strand, 38685384 - 38685433
Alignment:
Q  470 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgg 519  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| |||||    
T  38685384 tttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 38685433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 423 - 609
Target Start/End: Complemental strand, 18851031 - 18850850
Alignment:
Q  423 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 522  Q
    ||||| |||||||||| ||| || | ||||| | ||||||| |  |||||||||||||||| ||||||||||| | | ||||||| ||||| ||||| ||    
T  18851031 gaatttcttttaaatt-caatgtagacagtttcatatatctgtgagttttgcaatgaccattaacaaaagtcaagcgtagtcactaaaacaagttggtat 18850933  T
Q  523 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgct 609  Q
     ||||    ||||||||| || || ||||||||||| || ||||| |||||||||| ||| | ||| || || ||||||| ||||||    
T  18850932 atacc----acaaccagtgttgtcacatggtcaactttatgtagcaatatcaagggctacctaaagaaacggtctgaaaactttgct 18850850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 467 - 618
Target Start/End: Original strand, 35615191 - 35615341
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 566  Q
    ||||||| |||||| || ||||||||||| || ||||||| |||||| || ||||| || || ||||||||||| || |  ||||||||||| || ||||    
T  35615191 tgttttgtaatgactattaacaaaagtcaaggacagtcacgcaaacaagtaggcatatatctcccacaaccagtttttttgcatggtcaactttatgtag 35615290  T
Q  567 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 618  Q
    | |||| ||| ||||| |||||||| || ||  ||||||||||  |||||||    
T  35615291 caatat-aagagttacttcaaggaatggtctagaaattttgctaatagatga 35615341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 425 - 607
Target Start/End: Original strand, 43382483 - 43382665
Alignment:
Q  425 attccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcattt 524  Q
    ||||| |||||||| |||||||| ||||| ||| ||||  | |||||| | ||||| |||||||| ||||| || || ||||||||| | |||||  | |    
T  43382483 attccgtttaaattccaacgtcggcagtttcctctatcagtctgtttttctatgacaatcaacaagagtcaaggacaatcactcaaaaaagttggtgtgt 43382582  T
Q  525 accttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttg 607  Q
    || | || ||||| ||||||||||| |||||| | || || || ||||| || |||||||||||||  || ||||| ||||||    
T  43382583 acgtacctcaacccgtattctctcacggtcaagtttatgttgcaatatccagagttacatcaaggagtggtctgaagattttg 43382665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 558
Target Start/End: Original strand, 16804720 - 16804811
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 558  Q
    |||||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| || |||||||||||||||||    
T  16804720 tgttttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtgttctctcatggtcaact 16804811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 588
Target Start/End: Original strand, 31378870 - 31378991
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 566  Q
    |||||||||||||| ||||||||||| || || || |||||||| || || ||  |||| ||||||||||| || ||||| || ||||| || || || |    
T  31378870 tgttttgcaatgacaatcaacaaaagccaaggacaatcactcaagcaagtcggtgtttatcttccacaacccgtcttctcacacggtcagctttatgttg 31378969  T
Q  567 ccatatcaagggttacatcaag 588  Q
    |  |||| || |||||||||||    
T  31378970 cagtatccagagttacatcaag 31378991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 534
Target Start/End: Original strand, 12742644 - 12742711
Alignment:
Q  467 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 534  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  12742644 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 12742711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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