View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_43 (Length: 271)
Name: NF15777_low_43
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 7286803 - 7287045
Alignment:
| Q |
19 |
atttttgaagtttcaatatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttt |
118 |
Q |
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| T |
7286803 |
atttttgaagtttcaatatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttactctttgttaattttt |
7286902 |
T |
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| Q |
119 |
tgtgaaatattatttttaacttcacatggtgtcatgatagcttcttggttttggttaaactctagcctagttaaattgtttgttccattgaactggttgc |
218 |
Q |
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| T |
7286903 |
tgtgaaatattatttttaacttcacatggtgtcctgatagcttcttggttttggttaaactccagcctagttaaatagtttgttcaattgaagtggttgc |
7287002 |
T |
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| Q |
219 |
caacaaaagggcttccttggattgttcttttgtaagttctctg |
261 |
Q |
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| T |
7287003 |
caacaaaagggcttccttgggttgttcttttgtaagttctctg |
7287045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 8357396 - 8357227
Alignment:
| Q |
19 |
atttttgaagtttcaatatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttt |
118 |
Q |
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||||||| ||||||||||||||||||| ||| | |||||||||||| ||| | ||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
8357396 |
atttttgcagtttcaatatattcatttcaggaaacattccaatgtgaaatcaagttacactttagggactataattgtggtttgctctttgttaa-tttt |
8357298 |
T |
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| Q |
119 |
tgtgaaatattatttttaacttcacatggtgtcatgatagcttcttggttttggttaaactctagcctagttaa |
192 |
Q |
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| T |
8357297 |
catg--acattatttttaactccctctggtgtactcatagcttcttggatttggttaaact-tagcctagttaa |
8357227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 8365822 - 8365653
Alignment:
| Q |
19 |
atttttgaagtttcaatatattcattttagggaccattccaatgtgtaataatgttacacattagggattataattgtggtttgctctttgttaattttt |
118 |
Q |
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||||||| |||| | |||||||||||| |||||||||||||||||| ||| | ||||||| || |||| |||||| |||||||||||||| |||||||| |
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| T |
8365822 |
atttttgtagttacgatatattcatttcagggaccattccaatgtgaaatcaagttacactttcgggactataatcgtggtttgctctttcttaatttt- |
8365724 |
T |
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| Q |
119 |
tgtgaaatattatttttaacttcacatggtgtcatgatagcttcttggttttggttaaactctagcctagttaa |
192 |
Q |
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| T |
8365723 |
--tacgacattatttttaactccacctggtgtactcgtagcttcttggaattggttaaactc-agcctagttaa |
8365653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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