View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_46 (Length: 261)
Name: NF15777_low_46
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_46 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 40076 - 39842
Alignment:
| Q |
11 |
gatgaaacaataactagaataactagcttcacttatgtagtataatgatactcagcttcaatcattattgaaaccagaaatgcagattcaatgtaaaatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40076 |
gatgaaacaataactagaataactagcttcacttatgtagtataatgatactcagcttcaatcattattgaaaccagaaatgcagattcaatgtaaaatt |
39977 |
T |
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| Q |
111 |
ggtttacagaaatatatcatcctgttaccatccttaaatgttttcaatgatacaagaggataagaaataattaaagtaattcatagcacctcctccagtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39976 |
ggtttacagaaatatatcatcctgttaccatccttaaatgttttcaatgatacaagaggataagaaataattaaagtaattcatagcacctcctccagtc |
39877 |
T |
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| Q |
211 |
aagctacatctttcaacatgaaggtactatgctat |
245 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
39876 |
aagctacatctttcaacatgaaggtactatgctat |
39842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 3927923 - 3927689
Alignment:
| Q |
11 |
gatgaaacaataactagaataactagcttcacttatgtagtataatgatactcagcttcaatcattattgaaaccagaaatgcagattcaatgtaaaatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3927923 |
gatgaaacaataactagaataactagcttcacttatgtagtataatgatactcagcttcaatcattattgaaaccagaaatgcagattcaatgtaaaatt |
3927824 |
T |
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| Q |
111 |
ggtttacagaaatatatcatcctgttaccatccttaaatgttttcaatgatacaagaggataagaaataattaaagtaattcatagcacctcctccagtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3927823 |
ggtttacagaaatatatcatcctgttaccatccttaaatgttttcaatgatacaagaggataagaaataattaaagtaattcatagcacctcctccagtc |
3927724 |
T |
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| Q |
211 |
aagctacatctttcaacatgaaggtactatgctat |
245 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3927723 |
aagctacatctttcaacatgaaggtactatgctat |
3927689 |
T |
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