View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_48 (Length: 257)
Name: NF15777_low_48
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 39522318 - 39522547
Alignment:
| Q |
1 |
acaaatttactggttaagacaataagaccnnnnnnngtgaaaattaccactataaagtatttgctgcaaatttatcacagaagagttgagaaagtggtgt |
100 |
Q |
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| T |
39522318 |
acaaatttactggttaagacaataagaccaaaaaaagtgaaaattaccactataaagtatttgctgcaaatttatcacagaagagttgagaaagtggtgt |
39522417 |
T |
|
| Q |
101 |
ggggtatatagcttagcttaattttgttacatattacttaaaagtctaataacaaattctcaaaacagttattagcatcaaagaattagaaattgcttac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39522418 |
ggggtatatagcttagcttaattttgttacatattacttaaaattctaataacaaattctcaaaacagttattagcatcaaagaattagaaattgcttac |
39522517 |
T |
|
| Q |
201 |
ccaacaattttggataagttctgtaaatta |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39522518 |
ccaacaattttggataagttctgtaaatta |
39522547 |
T |
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