View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_49 (Length: 251)
Name: NF15777_low_49
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 12367126 - 12367358
Alignment:
| Q |
4 |
gaggtaagcctaaattgcttatatattgattgatatttggaaggtggtgtgaatcataatggatatgaccaagctagggatcatgaatgaaaaacaaaat |
103 |
Q |
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| T |
12367126 |
gaggtaagcctaaattgcttatatattgattgtta-------ggtggtatgaatcataatggatatgaccaagctagggatcatgaatgaaaaacaaaat |
12367218 |
T |
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| Q |
104 |
tataatcttttttaaattaccgaataataaagttaaatatttagattttaatcatgagattgaagccctcattctcattatatattttctgcaacttaat |
203 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
12367219 |
tataatcttttttacattaccgaataataaagttaaatatctagattttaatcatgagattgaagccctcattctcattttatatttgctgcaacttaat |
12367318 |
T |
|
| Q |
204 |
atatacatgaaatttcatgctatctctaatcttcatttca |
243 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |
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| T |
12367319 |
atatacatgaaatttcatgctatctctaatcttcttttca |
12367358 |
T |
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