View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_5 (Length: 693)
Name: NF15777_low_5
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 20969491 - 20969926
Alignment:
| Q |
11 |
tcatccagaataataaac-tggcattagaaccattctgttcaaaatctttcttaattaaactcagttcttaatatagcaagaagtgtcgatggcctcaac |
109 |
Q |
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| T |
20969491 |
tcatccagaataataaacctgtcattagaaacattctgttcaaaatctttcttaattaaactcagttcttgatatagcaagaagtgtcgatggcctcaac |
20969590 |
T |
|
| Q |
110 |
ccaagagtattgttcaatattgccttcatttagaagtgttctagccatttattacaaagatctannnnnnnctttcaacaatgatccattt-gttgaaga |
208 |
Q |
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| T |
20969591 |
ccaagagtatttttcaatattgccttcatttagaagtgttctagccatttattacaaagatctatttttt-ctttcaacaacgatccattttgttgaaga |
20969689 |
T |
|
| Q |
209 |
gttctccggcaggaaaaattatgagaaatgtcattctcatcaaaagaatgtcttgacggattcattttcaaactttcctctatgaccactccttacaatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
20969690 |
gttctccggcaggaaaaattatgagaaatgtcattctcatcaaaagaatgtcttgaaggattcattttcaaactttcctccacgaccactccttacaatg |
20969789 |
T |
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| Q |
309 |
ataattctcatgtctttttcattctgaactcattctcatcaaagaatgtcttgaagaaaaatttcttgaaggattcattttcaaacttttctccatgatc |
408 |
Q |
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| T |
20969790 |
ataattctcatgtctttttcattctgaactcattctcatcaaagaatgtcttgaagaaaaatttcttgaaggattcattttcaaactttcctccatgatc |
20969889 |
T |
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| Q |
409 |
actccttacaaagataattctcatgtcttttaaactt |
445 |
Q |
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| T |
20969890 |
actccttacaaagataattctcatgtcttttaaactt |
20969926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 480 - 596
Target Start/End: Complemental strand, 5523372 - 5523256
Alignment:
| Q |
480 |
gaagtctttctttttcttgatttaaattatcaatctcttttttcaaagataaacacttgttggttaagaatctttctgtgtttatgagattctcaaaatc |
579 |
Q |
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||||||||||| |||||| |||||||| |||| |||| |||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
5523372 |
gaagtctttctatttctttatttaaatcatcattctccttttgcaaagataaacacttgttggttaagaatcactcatcatttatgagattttcaaaatc |
5523273 |
T |
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| Q |
580 |
aatgtcaagtttttcat |
596 |
Q |
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| T |
5523272 |
attttcaagttgttcat |
5523256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 461 - 521
Target Start/End: Original strand, 33188421 - 33188481
Alignment:
| Q |
461 |
gaaatattattcaaggtttgaagtctttctttttcttgatttaaattatcaatctcttttt |
521 |
Q |
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| T |
33188421 |
gaaatatcatttaaggtttgaagtttttctttttcttgctttaagtcatcaatctcttttt |
33188481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 14888201 - 14888244
Alignment:
| Q |
374 |
ttgaaggattcattttcaaacttttctccatgatcactccttac |
417 |
Q |
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| T |
14888201 |
ttgaaggatgcattttcaaattttcctccatgatcactccttac |
14888244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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