View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_51 (Length: 250)
Name: NF15777_low_51
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39522143 - 39521902
Alignment:
| Q |
1 |
catgatcaattttcacgtgacaaggaatatatagtgagcatttggacaaccaaaagcatggtactaagtccgtaacatgtttgatcattttagattacaa |
100 |
Q |
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| T |
39522143 |
catgatcaattttcacgtgacaaggaatatatagtgagcatttggacaaccaaaagcatggtactaagtccgtaacatgtttgatcattttagattacaa |
39522044 |
T |
|
| Q |
101 |
tacaacaaacattcctgtttcacactccaaagaatcttctcactttttacattacaattcacacttaacttcagtggaagtctccaaaatctcctcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39522043 |
tacaacaaacattcctgtttcacactccaaagaatcttctcactttttacattacaattcacacttaacttcagtggaagtctccaaaatctcctcatca |
39521944 |
T |
|
| Q |
201 |
gattcagaaagtgcagagtacaataatgtcctttcctttgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39521943 |
gattcagaaagtgcagagtacaataatgtcctttcctttgct |
39521902 |
T |
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