View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_52 (Length: 250)
Name: NF15777_low_52
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 32895605 - 32895839
Alignment:
| Q |
1 |
cactgcatggatgtgctttattggagcagcacaatcagctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacatt |
100 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
32895605 |
cactgcattgatgtgctttattggagcagtacaatcagctgttttcacaatgatagcagaacatgataatccttcggcatggattataggattcaacatt |
32895704 |
T |
|
| Q |
101 |
gacttgtggtccacaatatatggggttaagtgtcatagcaactacaatgaatttataaaaatgtactgccaaatcttaaaattctaacattatatatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32895705 |
gacttgtggtccacaatatatggggttaagtgtcatagcaactacaatgaatttataaaaatgtactgccaaatcttaaaattctaacattatatatcaa |
32895804 |
T |
|
| Q |
201 |
atgacagggaattgttgttggtggtttgttgatat |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
32895805 |
atgacagggaattgttgttggtggtttgttgatat |
32895839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 32952634 - 32952833
Alignment:
| Q |
1 |
cactgcatggatgtgctttattggagcagcacaatcagctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacatt |
100 |
Q |
| |
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|||| |||||||||||||||| |||||| ||||||||||||||||||| | |||||||||| | |||| ||||||||||||||||||||| |||||||| |
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| T |
32952634 |
cactacatggatgtgctttatgggagcaatacaatcagctgttttcacagtaatagcagaacgtaataacccttcagcatggattataggattcaacatt |
32952733 |
T |
|
| Q |
101 |
gacttgtggtccacaatatatggggttaagtgtcatagcaactacaatgaatttataaaaatgtactgccaaatcttaaaattctaacattatatatcaa |
200 |
Q |
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||||||||||||| | ||||||||||||||| ||||| ||| ||||||||||||||| ||| | || ||||||||||| |||||||||||| |||||| |
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| T |
32952734 |
gacttgtggtccatattatatggggttaagtatcataacaaatacaatgaatttatataaaatttctctcaaatcttaaagttctaacattatgtatcaa |
32952833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 32935252 - 32935400
Alignment:
| Q |
1 |
cactgcatggatgtgctttattggagcagcacaatcagctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacatt |
100 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
32935252 |
cactacatggatgtgctttatgggagcagtacaatcagctgttttcacaataatagtagaacatgataacccttcagcatggattataggattcaacatt |
32935351 |
T |
|
| Q |
101 |
gacttgtggtccacaatatatggggttaagtgtcatagcaactacaatg |
149 |
Q |
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||||||||||||| | ||||||||||||||| || |||||| ||||||| |
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| T |
32935352 |
gacttgtggtccatattatatggggttaagtatcttagcaagtacaatg |
32935400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 19504127 - 19504005
Alignment:
| Q |
6 |
catggatgtgctttattggagcagcacaatcagctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacattgactt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||| ||||| |||||||| |
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| T |
19504127 |
catggatgtgctttattggagcagcacaatcagctattttcacagtgatagcagaacataataacccttcagcatggattatagggctcaatattgactt |
19504028 |
T |
|
| Q |
106 |
gtggtccacaatatatggggtta |
128 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
19504027 |
gtggtccacaatatatggggtta |
19504005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 32918998 - 32919125
Alignment:
| Q |
1 |
cactgcatggatgtgctttattggagcagcacaatcagctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacatt |
100 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||| |||| ||||||||||||||||||||| |||||||| |
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| T |
32918998 |
cactacatggatgtgctttatgggagcagcacaatcagccattttcacaataatagtagaacataataacccttcagcatggattataggattcaacatt |
32919097 |
T |
|
| Q |
101 |
gacttgtggtccacaatatatggggtta |
128 |
Q |
| |
|
||||||||||||| |||||||||||||| |
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|
| T |
32919098 |
gacttgtggtccataatatatggggtta |
32919125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 32882022 - 32882149
Alignment:
| Q |
1 |
cactgcatggatgtgctttattggagcagcacaatcagctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacatt |
100 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| |||||||| | |||| |||||| |||| |||||||||||||||||||||||||||||| |
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| T |
32882022 |
cacttcatggatgtgctttatgggagcagcacaatcagcaattttcacagtaatagtagaacaaaataacccttcagcatggattataggactcaacatt |
32882121 |
T |
|
| Q |
101 |
gacttgtggtccacaatatatggggtta |
128 |
Q |
| |
|
||||||||||||| ||||||| |||||| |
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|
| T |
32882122 |
gacttgtggtccataatatattgggtta |
32882149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 32884891 - 32885021
Alignment:
| Q |
1 |
cactgcatggatgtgctttattggagcagcacaatcagctgttttcacaatgatagcagaacatgataatccttcagcatggattataggactcaacatt |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||||||||||||||||||| | |||| ||||||| |||| ||||||| ||||||||||||||||||||| |
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| T |
32884891 |
cactacatggatgtgctttatgggagcaatacaatcagctgttttcacattaatagtagaacataataacacttcagcttggattataggactcaacatt |
32884990 |
T |
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| Q |
101 |
gacttgtggtccacaatatatggggttaagt |
131 |
Q |
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||||||||||||| ||||||||| ||||||| |
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|
| T |
32884991 |
gacttgtggtccataatatatggagttaagt |
32885021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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