View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_low_54 (Length: 250)

Name: NF15777_low_54
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_low_54
NF15777_low_54
[»] chr4 (7 HSPs)
chr4 (1-240)||(9907996-9908245)
chr4 (110-167)||(36722695-36722752)
chr4 (128-167)||(24091450-24091489)
chr4 (123-167)||(10192271-10192315)
chr4 (131-167)||(18628590-18628626)
chr4 (123-167)||(23819076-23819120)
chr4 (119-167)||(32920435-32920483)
[»] chr2 (7 HSPs)
chr2 (123-167)||(37276733-37276777)
chr2 (129-167)||(28933811-28933849)
chr2 (119-160)||(16785383-16785424)
chr2 (110-167)||(36863651-36863708)
chr2 (123-167)||(39983329-39983373)
chr2 (123-167)||(42817415-42817459)
chr2 (119-163)||(43141862-43141906)
[»] chr5 (6 HSPs)
chr5 (123-166)||(16016472-16016515)
chr5 (119-168)||(7026318-7026367)
chr5 (123-168)||(6582871-6582916)
chr5 (123-167)||(32408631-32408675)
chr5 (123-167)||(36539733-36539777)
chr5 (123-167)||(37588399-37588443)
[»] chr8 (6 HSPs)
chr8 (119-167)||(31884581-31884629)
chr8 (123-164)||(787145-787186)
chr8 (110-167)||(34551107-34551164)
chr8 (123-167)||(13652202-13652246)
chr8 (123-167)||(13710845-13710889)
chr8 (119-167)||(41208872-41208920)
[»] chr3 (5 HSPs)
chr3 (119-167)||(36646417-36646465)
chr3 (130-167)||(45590651-45590688)
chr3 (129-165)||(237386-237422)
chr3 (123-167)||(14548760-14548804)
chr3 (131-163)||(48286857-48286889)
[»] chr1 (10 HSPs)
chr1 (119-162)||(46504253-46504296)
chr1 (137-167)||(46980182-46980212)
chr1 (132-162)||(51957431-51957461)
chr1 (110-167)||(5756712-5756769)
chr1 (110-167)||(6074461-6074518)
chr1 (123-167)||(25005836-25005880)
chr1 (123-167)||(44940328-44940372)
chr1 (5-49)||(47005513-47005557)
chr1 (123-167)||(47960663-47960707)
chr1 (119-167)||(52286665-52286713)
[»] chr7 (5 HSPs)
chr7 (121-167)||(5006546-5006592)
chr7 (129-167)||(25558236-25558274)
chr7 (129-167)||(25558434-25558472)
chr7 (124-161)||(5569676-5569713)
chr7 (123-167)||(40439041-40439085)
[»] scaffold0092 (1 HSPs)
scaffold0092 (123-159)||(40226-40262)
[»] chr6 (2 HSPs)
chr6 (131-167)||(1402983-1403019)
chr6 (131-167)||(32848643-32848679)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9908245 - 9907996
Alignment:
Q  1 atattcctcttcatacaattctggtgccataaattctggtgtacctgaaaaatcataacaaccacaaaaatat--------tgatagacataatttagtt 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||| ||        |||||||||||||||||||    
T  9908245 atattcctcttcatacaattctggtgccataaattctggtgtacctaacaaatcataacaaacacacaaaaatgatcaatttgatagacataatttagtt 9908146  T
Q  93 tagattacttatgttaattattttggtaaactcttcaggataacttatgaaaacaatttataacttatatgaaaaat--ttcgactttatatatttttta 190  Q
    || ||||||  ||||||| ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  9908145 tatattactcttgttaataattttcgtaaacttttcaggataacttatgaaaacagtttataacttatatgaaaaatatttcgactttatatatttttta 9908046  T
Q  191 cataaatacttatatgaagacatttatacataagttggactatacctatg 240  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9908045 cataaatacttatatgaagacatttatacataagttgaactatacctatg 9907996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 36722695 - 36722752
Alignment:
Q  110 ttattttggtaaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||  ||| |||||||||||||||||| ||||||| ||||||||||||||||||    
T  36722695 ttattttcataagctcttcaggataacttatcaaaacaacttataacttatatgaaaa 36722752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 24091489 - 24091450
Alignment:
Q  128 caggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  24091489 caggataacttatgaaaacagtttatagcttatatgaaaa 24091450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 10192315 - 10192271
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||||||| ||| ||||||||| ||||||||||||||||||    
T  10192315 ctctccaggatagcttttgaaaacaacttataacttatatgaaaa 10192271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 18628590 - 18628626
Alignment:
Q  131 gataacttatgaaaacaatttataacttatatgaaaa 167  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  18628590 gataacttatgaaaacagtttataacttatataaaaa 18628626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 23819120 - 23819076
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    ||||||| |||| ||||||||||||  ||||||||||||||||||    
T  23819120 ctcttcaagatagcttatgaaaacatgttataacttatatgaaaa 23819076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 32920435 - 32920483
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||| ||||||||||||||||||||||| ||||| ||| ||| ||||    
T  32920435 taaacttttcaggataacttatgaaaacaacttatagcttctattaaaa 32920483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 37276777 - 37276733
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||    
T  37276777 ctctccaggataacttatgaaaacaacttataacttatatgaaaa 37276733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 28933849 - 28933811
Alignment:
Q  129 aggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  28933849 aggatagcttatgaaaacaatttataacttaaatgaaaa 28933811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 16785383 - 16785424
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttat 160  Q
    |||||||||||||||| ||||||||||||| || ||||||||    
T  16785383 taaactcttcaggatatcttatgaaaacaacttctaacttat 16785424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 36863651 - 36863708
Alignment:
Q  110 ttattttggtaaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||  ||| |||| || |||| ||||||||||||||||||||||||||| ||||    
T  36863651 ttattttcataagctctccaagatagcttatgaaaacaatttataacttatataaaaa 36863708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 39983373 - 39983329
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||    
T  39983373 ctctccaggatagcttatgaaaacaacttatagcttatatgaaaa 39983329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 42817415 - 42817459
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||| ||| |||||||||||| ||||| |||||||||||||    
T  42817415 ctcttcagaatagcttatgaaaacagtttattacttatatgaaaa 42817459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 43141906 - 43141862
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatatg 163  Q
    |||||||||||||||| ||||||||||||  ||||| ||||||||    
T  43141906 taaactcttcaggatagcttatgaaaacatcttatagcttatatg 43141862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 16016472 - 16016515
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaa 166  Q
    ||||||||||||||| |||||||||| |||||||||||||||||    
T  16016472 ctcttcaggataactaatgaaaacaacttataacttatatgaaa 16016515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 7026318 - 7026367
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatatgaaaaa 168  Q
    ||||||||||| ||||||||||||||||||||||||   |||||||||||    
T  7026318 taaactcttcacgataacttatgaaaacaatttatattgtatatgaaaaa 7026367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 6582871 - 6582916
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaaa 168  Q
    |||| ||||| |||||||||||||| ||||||||||||| ||||||    
T  6582871 ctctgcaggaaaacttatgaaaacagtttataacttataagaaaaa 6582916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 32408631 - 32408675
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||| |||||||||| | |||||| ||||||||||||    
T  32408631 ctcttcaggatagcttatgaaaatagtttatagcttatatgaaaa 32408675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 36539777 - 36539733
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||| ||||||||| ||||||| ||||| ||||||||||||    
T  36539777 ctcttcagaataacttataaaaacaacttatagcttatatgaaaa 36539733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 37588399 - 37588443
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||| ||||||||||||||||| ||||| ||||||||||||    
T  37588399 ctctccagaataacttatgaaaacaacttatagcttatatgaaaa 37588443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 31884629 - 31884581
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||| || |||| ||||||||||||||||||| ||||||||||||    
T  31884629 taaactctccatgatagcttatgaaaacaatttatagcttatatgaaaa 31884581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 787145 - 787186
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatga 164  Q
    ||||||| ||||||||||||||||| |||||| |||||||||    
T  787145 ctcttcaagataacttatgaaaacagtttatagcttatatga 787186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 34551164 - 34551107
Alignment:
Q  110 ttattttggtaaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||  ||| |||| |||||||||||| |||||||| |||||||||| |||||||    
T  34551164 ttattttcataagctctccaggataacttaagaaaacaacttataacttaaatgaaaa 34551107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 13652246 - 13652202
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||| ||| ||||| ||||||||||||||||||||||||||    
T  13652246 ctctccagaatagcttataaaaacaatttataacttatatgaaaa 13652202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 13710889 - 13710845
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||| ||| ||||| ||||||||||||||||||||||||||    
T  13710889 ctctccagaatagcttataaaaacaatttataacttatatgaaaa 13710845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 41208920 - 41208872
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||||||| | | ||||||||| ||||| ||||||||||||    
T  41208920 taaactcttcaggatagcatgtgaaaacaagttatagcttatatgaaaa 41208872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 36646417 - 36646465
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    ||||||||  |||||| ||||||||||||| ||||||||||||||||||    
T  36646417 taaactctctaggatagcttatgaaaacaagttataacttatatgaaaa 36646465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 45590688 - 45590651
Alignment:
Q  130 ggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  45590688 ggataacttatgaaaacaacttatatcttatatgaaaa 45590651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 237422 - 237386
Alignment:
Q  129 aggataacttatgaaaacaatttataacttatatgaa 165  Q
    |||||||||||||||||||| |||||||||| |||||    
T  237422 aggataacttatgaaaacaacttataacttacatgaa 237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 14548760 - 14548804
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||| ||||||||||||||||| ||||| ||||||||||||    
T  14548760 ctctccagaataacttatgaaaacaacttatagcttatatgaaaa 14548804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 48286857 - 48286889
Alignment:
Q  131 gataacttatgaaaacaatttataacttatatg 163  Q
    ||||||||||||||||| |||||||||||||||    
T  48286857 gataacttatgaaaacagtttataacttatatg 48286889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 162
Target Start/End: Original strand, 46504253 - 46504296
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatat 162  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||    
T  46504253 taaactcttcaagataacttatcaaaacaacttataacttatat 46504296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 167
Target Start/End: Original strand, 46980182 - 46980212
Alignment:
Q  137 ttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||||||||||||||||||||||    
T  46980182 ttatgaaaacaatttataacttatatgaaaa 46980212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 162
Target Start/End: Original strand, 51957431 - 51957461
Alignment:
Q  132 ataacttatgaaaacaatttataacttatat 162  Q
    |||||||||||||||||||||||||||||||    
T  51957431 ataacttatgaaaacaatttataacttatat 51957461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 5756712 - 5756769
Alignment:
Q  110 ttattttggtaaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||| |||| |||| || |||| |||||||| |||||| |||||||||||    
T  5756712 ttattttggtaagctctccaggctagcttacgaaaacaacttataatttatatgaaaa 5756769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 6074518 - 6074461
Alignment:
Q  110 ttattttggtaaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||| ||||||||| || |||| |||||||| | ||| ||||||||||||    
T  6074518 ttattttggtaagctcttcaggctagcttaagaaaacaactcatagcttatatgaaaa 6074461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 25005836 - 25005880
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||    
T  25005836 ctctccaggatagcttatgaaaacaacttatagcttatatgaaaa 25005880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 44940372 - 44940328
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    ||||||||||||  |||||||||||| ||||||||||| ||||||    
T  44940372 ctcttcaggatagattatgaaaacaacttataacttatttgaaaa 44940328  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 47005513 - 47005557
Alignment:
Q  5 tcctcttcatacaattctggtgccataaattctggtgtacctgaa 49  Q
    ||||||||||||| ||||||||||||||| || ||||| ||||||    
T  47005513 tcctcttcatacacttctggtgccataaactcaggtgttcctgaa 47005557  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 47960663 - 47960707
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    ||||||||||||||||||||||||   ||||| ||||||||||||    
T  47960663 ctcttcaggataacttatgaaaacggcttatagcttatatgaaaa 47960707  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 52286713 - 52286665
Alignment:
Q  119 taaactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    ||||||||||| ||| ||||||||||| | |||||| ||||||||||||    
T  52286713 taaactcttcaagatgacttatgaaaatagtttatagcttatatgaaaa 52286665  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 5006546 - 5006592
Alignment:
Q  121 aactcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||| |||| || ||||||||||||||||||| ||||||||||||    
T  5006546 aactctccagggtagcttatgaaaacaatttataccttatatgaaaa 5006592  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 25558236 - 25558274
Alignment:
Q  129 aggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  25558236 aggataacttatgaaaacaacttatagcttatatgaaaa 25558274  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 25558434 - 25558472
Alignment:
Q  129 aggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  25558434 aggataacttatgaaaacaacttatagcttatatgaaaa 25558472  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 5569676 - 5569713
Alignment:
Q  124 tcttcaggataacttatgaaaacaatttataacttata 161  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  5569676 tcttcaagataacttatgaaaacaacttataacttata 5569713  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 40439085 - 40439041
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||||||||| || |||||||||| ||||||| ||||||||||    
T  40439085 ctcttcaggatagctaatgaaaacaacttataacatatatgaaaa 40439041  T

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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 40262 - 40226
Alignment:
Q  123 ctcttcaggataacttatgaaaacaatttataactta 159  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  40262 ctcttcaggataacttatgaaaacaacttatagctta 40226  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 1403019 - 1402983
Alignment:
Q  131 gataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  1403019 gatagcttatgaaaacaatttatagcttatatgaaaa 1402983  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 32848643 - 32848679
Alignment:
Q  131 gataacttatgaaaacaatttataacttatatgaaaa 167  Q
    |||||| |||||||| |||||||||||||||||||||    
T  32848643 gataacatatgaaaaaaatttataacttatatgaaaa 32848679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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