View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_55 (Length: 247)
Name: NF15777_low_55
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37794624 - 37794402
Alignment:
| Q |
1 |
cactatgcaaagaagaatcttccttgctgaaagatggtgttgaaatggtgcaagttgatcataatggtattcttttcaacttaaaaggtttgattaagct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37794624 |
cactatgcaaagaagaatcttccttgctgaacgatggtgttgaaatggtgcaagttgatcataatggtattcttttcaacttaaaaggtttgattaagct |
37794525 |
T |
|
| Q |
101 |
cattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgacgctgttcaaggtcttctcaacctgagtctccttgagacaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37794524 |
cattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgaagctgttcaaggtcttctcaacctgagtttccttgagacaaag |
37794425 |
T |
|
| Q |
201 |
gtcccggtcacggtaagctataa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
37794424 |
gtcccggtcacggtaagctataa |
37794402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 2919707 - 2919532
Alignment:
| Q |
47 |
ggtgcaagttgatcataatggtattcttttcaacttaaaaggtttgattaagctcattcttggtttccttgcttgttctagcctgaagatggaaccagac |
146 |
Q |
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||||||||||||||||||| | ||| |||||||||||||||||| |||||||| |||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
2919707 |
ggtgcaagttgatcataatagaatt---ttcaacttaaaaggtttggttaagctcgttcttggtttccttgcttgttcaagactgaaaatggaaccagat |
2919611 |
T |
|
| Q |
147 |
aagaggcatgacgctgttcaaggtcttctcaacctgagtc----tccttgagacaaaggtcccggtcacggtaagctata |
222 |
Q |
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|
| T |
2919610 |
aagaggcatgaagctgttcaaggtcttattaacctga-tcaccttccttgagacagtggtgccggtcacggtaagttata |
2919532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 3013530 - 3013724
Alignment:
| Q |
1 |
cactatgcaaagaagaatcttccttgctgaaagatggtgttgaaatggtgcaagttgatcataatggtattcttttcaacttaaaaggtttgattaagct |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||| | || || | | ||||||| ||| |||| ||||||||||| || ||| ||||||| |
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| T |
3013530 |
cactatgcaaagaagaatcgtccttggtgaatgatggtggtaaactgaagtatgttgatccaaataatatt---ttcaacttaaaggggttggttaagct |
3013626 |
T |
|
| Q |
101 |
cattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgacgctgttcaaggtcttctcaacctgagtctccttgagacaa |
198 |
Q |
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||||||||||| ||||| |||||||||||||| ||||||||| | | ||| || || ||||||||| ||||| ||||| ||||| ||| |||||||| |
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| T |
3013627 |
tattcttggttttcttgcatgttctagcctgaaaatggaaccaaaaaggagacaagaagctgttcaaagtcttatcaacttgagtttccatgagacaa |
3013724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 2929183 - 2929058
Alignment:
| Q |
73 |
ttttcaacttaaaaggtttgattaagctcattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgacgctgttcaaggtct |
172 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||||||| ||||||||| || || ||| ||||||||| | ||||| ||||| ||||||||| |||| |
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|
| T |
2929183 |
ttttcaacttaaaggggttggttaagcttattcttggttttcttgcttgtgctttcccgaaaatggaaccaaagaagagacatgaagctgttcaaagtct |
2929084 |
T |
|
| Q |
173 |
tctcaacctgagtctccttgagacaa |
198 |
Q |
| |
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| ||||| |||| ||| |||||||| |
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| T |
2929083 |
tatcaactcgagtttccatgagacaa |
2929058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 2945824 - 2945699
Alignment:
| Q |
73 |
ttttcaacttaaaaggtttgattaagctcattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgacgctgttcaaggtct |
172 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||||||| ||||| ||| ||| |||||| ||| ||||| | ||||| ||||| ||||||||| |||| |
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| T |
2945824 |
ttttcaacttaaaggggttggttaagcttattcttggttttcttgcatgtcctaacctgaaaatgaaaccaaaaaagagacatgaagctgttcaaagtct |
2945725 |
T |
|
| Q |
173 |
tctcaacctgagtctccttgagacaa |
198 |
Q |
| |
|
| ||||| |||| ||| |||||||| |
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|
| T |
2945724 |
tgtcaactcgagtttccatgagacaa |
2945699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28023637 - 28023416
Alignment:
| Q |
1 |
cactatgcaaagaagaatcttccttgctgaaagatggtgttgaaatggtgcaagttgatcataatggtattcttttcaacttaaaaggtttgattaagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
28023637 |
cactatgcaaagaagaatcttccttgcggaatgatggtgttgaaatggtgcaagttgatcataacgatattcttttcaacttaaaaggtttgattaagct |
28023538 |
T |
|
| Q |
101 |
cattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgacgctgttcaaggtcttctcaacctgagtctccttgagacaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||| |
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| T |
28023537 |
cattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgaagctgttcaaggtcttctcaacatgagcttccttgaggcaaag |
28023438 |
T |
|
| Q |
201 |
gtcccggtcacggtaagctata |
222 |
Q |
| |
|
|||||||||||||| ||||||| |
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| T |
28023437 |
gtcccggtcacggttagctata |
28023416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 1507932 - 1508038
Alignment:
| Q |
73 |
ttttcaacttaaaaggtttgattaagctcattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgacgctgttcaaggtct |
172 |
Q |
| |
|
||||||||||||| || ||| |||||| ||||||||||| ||||| ||||||| ||| || ||||||||| ||||| ||||| ||||||||| ||| |
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|
| T |
1507932 |
ttttcaacttaaaggggttggctaagcttattcttggttttcttgcatgttctaaccttaaaatggaaccaagtaagagacatgaagctgttcaaactct |
1508031 |
T |
|
| Q |
173 |
tctcaac |
179 |
Q |
| |
|
||||||| |
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|
| T |
1508032 |
tctcaac |
1508038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 4917302 - 4917408
Alignment:
| Q |
95 |
taagctcattcttggtttccttgcttgttctagcctgaagatggaaccagacaagaggcatgacgctgttcaaggtcttctcaacctgagtctccttgag |
194 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||| | ||||||||| | ||||| ||||| ||||||||| | |||||||| | ||| | | |||| |
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|
| T |
4917302 |
taagcttattcttggttttcttgcatgttctagccttgaaatggaaccaaaaaagagacatgaagctgttcaaaattttctcaacttaagttttcatgag |
4917401 |
T |
|
| Q |
195 |
acaaagg |
201 |
Q |
| |
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||||||| |
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|
| T |
4917402 |
acaaagg |
4917408 |
T |
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