View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_low_59 (Length: 226)

Name: NF15777_low_59
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_low_59
NF15777_low_59
[»] chr6 (14 HSPs)
chr6 (15-226)||(26059348-26059559)
chr6 (15-226)||(26079318-26079529)
chr6 (6-166)||(25514276-25514427)
chr6 (158-226)||(27703355-27703423)
chr6 (6-108)||(25486787-25486906)
chr6 (126-196)||(26852227-26852297)
chr6 (59-108)||(26146455-26146504)
chr6 (15-102)||(25548397-25548499)
chr6 (59-100)||(27715139-27715180)
chr6 (6-44)||(25583118-25583156)
chr6 (33-62)||(26146387-26146416)
chr6 (59-100)||(27682475-27682516)
chr6 (59-103)||(27078820-27078864)
chr6 (156-192)||(27079021-27079057)
[»] scaffold0349 (1 HSPs)
scaffold0349 (59-100)||(16764-16805)
[»] chr8 (1 HSPs)
chr8 (59-100)||(29270443-29270484)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 26059348 - 26059559
Alignment:
Q  15 gaggggggtgtgagattcattgatccttcattatcacaatttatgcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagggtttta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26059348 gaggggggtgtgagattcattgatccttcattatcacaatttatgcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagggtttta 26059447  T
Q  115 gtgacacggatgaggatgtaatattgaagaatcctaataatagaaagacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatgggga 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26059448 gtgacacggaggaggatgtaatattgaagaatcctaataatagaaagacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatgggga 26059547  T
Q  215 tgagattgaaat 226  Q
    ||||||||||||    
T  26059548 tgagattgaaat 26059559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 26079318 - 26079529
Alignment:
Q  15 gaggggggtgtgagattcattgatccttcattatcacaatttatgcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagggtttta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26079318 gaggggggtgtgagattcattgatccttcattatcacaatttatgcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagggtttta 26079417  T
Q  115 gtgacacggatgaggatgtaatattgaagaatcctaataatagaaagacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatgggga 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26079418 gtgacacggaggaggatgtaatattgaagaatcctaataatagaaagacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatgggga 26079517  T
Q  215 tgagattgaaat 226  Q
    ||||||||||||    
T  26079518 tgagattgaaat 26079529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 25514276 - 25514427
Alignment:
Q  6 agcagcacagaggggggtgtgagattcattgatccttcattatcacaatttatgcaaagattggtggaagtgggagtttcagagaaaggggaggaggagg 105  Q
    |||| ||| ||||||||||||||||| |||||||||||||||||||||         | |||||||||||||||||||||||||||||||||||||||||    
T  25514276 agcaacacggaggggggtgtgagattaattgatccttcattatcacaa---------aaattggtggaagtgggagtttcagagaaaggggaggaggagg 25514366  T
Q  106 agggttttagtgacacggatgaggatgtaatattgaagaatcctaataatagaaagacttg 166  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  25514367 agggttttagtgacacggaggaggatgtaatattgaacaatcctaataatagaaagacttg 25514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 27703423 - 27703355
Alignment:
Q  158 aaagacttggggtacattccttagtctaggtgcatcaaaaagcaacacggatggggatgagattgaaat 226  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27703423 aaagacatggggtacattccttagtctaggtgcatcaaaaagcaacacgcatggggatgagattgaaat 27703355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 25486787 - 25486906
Alignment:
Q  6 agcagcacagaggggggtgtgagattcattgatccttcattatcacaatttatg-----------------caaagattggtggaagtgggagtttcaga 88  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||    
T  25486787 agcaacacggaggggggtgtgagattcattgatccttcattatcacaatttatgtgcctcctctaaaaaagcaaagattggtggaagtgggagtttcaga 25486886  T
Q  89 gaaaggggaggaggaggagg 108  Q
    ||||||||||||||||||||    
T  25486887 gaaaggggaggaggaggagg 25486906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 26852227 - 26852297
Alignment:
Q  126 gaggatgtaatattgaagaatcctaataatagaaagacttggggtacattccttagtctaggtgcatcaaa 196  Q
    |||||||| |||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  26852227 gaggatgtgatattgaacaatactaatagttgaaagacttggggtacattccttagtctaggtgcatcaaa 26852297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 26146455 - 26146504
Alignment:
Q  59 gcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26146455 gcaaagattggtggaagtgggagtttcagagaaaggggaggaggaggagg 26146504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 25548397 - 25548499
Alignment:
Q  15 gaggggggtgtgagattcattgatccttcattatcacaatttatgc---------------aaagattggtggaagtgggagtttcagagaaaggggagg 99  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||               |||||||||||||||||||||||||||||||||||||||    
T  25548397 gaggggagtgtgagattcattgatccttcattattacaatttatgcctcctcaaaaaaagcaaagattggtggaagtgggagtttcagagaaaggggagg 25548496  T
Q  100 agg 102  Q
    |||    
T  25548497 agg 25548499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 27715180 - 27715139
Alignment:
Q  59 gcaaagattggtggaagtgggagtttcagagaaaggggagga 100  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  27715180 gcaaagattggtggaagtgggagtttcagagacagaggagga 27715139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 25583118 - 25583156
Alignment:
Q  6 agcagcacagaggggggtgtgagattcattgatccttca 44  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  25583118 agcaacacggaggggggtgtgagattcattgatccttca 25583156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 26146387 - 26146416
Alignment:
Q  33 attgatccttcattatcacaatttatgcaa 62  Q
    ||||||||||||||||||||||||||||||    
T  26146387 attgatccttcattatcacaatttatgcaa 26146416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 27682475 - 27682516
Alignment:
Q  59 gcaaagattggtggaagtgggagtttcagagaaaggggagga 100  Q
    |||||||||||||||||| ||||||||||||| || ||||||    
T  27682475 gcaaagattggtggaagttggagtttcagagacagaggagga 27682516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 27078820 - 27078864
Alignment:
Q  59 gcaaagattggtggaagtgggagtttcagagaaaggggaggagga 103  Q
    |||| |||||||||||||||||||||| |||| || |||||||||    
T  27078820 gcaaggattggtggaagtgggagtttccgagacagaggaggagga 27078864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 27079021 - 27079057
Alignment:
Q  156 agaaagacttggggtacattccttagtctaggtgcat 192  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  27079021 agaaagacatggggtacattcctttgtctaggtgcat 27079057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 16764 - 16805
Alignment:
Q  59 gcaaagattggtggaagtgggagtttcagagaaaggggagga 100  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  16764 gcaaagattggtggaagtgggagtttcagagacagaggagga 16805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 29270484 - 29270443
Alignment:
Q  59 gcaaagattggtggaagtgggagtttcagagaaaggggagga 100  Q
    |||||||||||||||||||||||||||||||| || ||||||    
T  29270484 gcaaagattggtggaagtgggagtttcagagacagaggagga 29270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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