View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_6 (Length: 692)
Name: NF15777_low_6
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 36 - 629
Target Start/End: Original strand, 8172904 - 8173512
Alignment:
| Q |
36 |
tagcctatttattacgtcttcttaagaatgaaaaagtgttagatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtca |
135 |
Q |
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| T |
8172904 |
tagccaatttattacgtcctcttaagaatgaaaaagtgttagatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtca |
8173003 |
T |
|
| Q |
136 |
attatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagattatga |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8173004 |
attatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatc-tacacaatgatgttaattccttggctaagttggaagattatgt |
8173102 |
T |
|
| Q |
236 |
aaatcaattgtgtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagttgaaatattcagaggctgaacttgttggaatctcgaat |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8173103 |
taatcaattgtgtaatgaacatatgtttctgaatgggaaggtgatatattggtcttgccagttgaaatattcagaggctgaacttgttggaatctcgaat |
8173202 |
T |
|
| Q |
336 |
cgtctccccatggatgaagaaaatcttc----------------gaatataagtcaaacaatggaaaccttcttacaacaacgtgaagctaaacaaacag |
419 |
Q |
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| T |
8173203 |
cgtctccccatggatgaagaaaatcgtcgaatattggaaattaagaatataagtcaaacaatggaaaccttcttacaacaacgtgaagctaaacaaacag |
8173302 |
T |
|
| Q |
420 |
agattgaacaagtttttatgaagaagatggatgtgttaaagggtagagctcaattagatactttagaggtggatttttcctgtccccaccctttttagaa |
519 |
Q |
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| T |
8173303 |
agattgaacaagtttttatgaagaagatggatgtgttaaagggtagagctcaattagatactttagaggtggatttttcctgtccccaccctttttagaa |
8173402 |
T |
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| Q |
520 |
ataaaatatgataggatagttagtagttatcacaaactatattggagagaatagagtagggatctattatgtcttttggtttcctagtttactattacat |
619 |
Q |
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| T |
8173403 |
ataaaatatgataggatagttagtagttatcacaaactatattggagagaatagagtagggatctattatgtcttttggtttcctagtttactattacat |
8173502 |
T |
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| Q |
620 |
taatattatg |
629 |
Q |
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| T |
8173503 |
aaatattatg |
8173512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 36 - 265
Target Start/End: Complemental strand, 8225690 - 8225459
Alignment:
| Q |
36 |
tagcctatttattacgtcttcttaagaatgaaaaagtgttagatata---cttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacg |
132 |
Q |
| |
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| T |
8225690 |
tagccgatttattacgtctgattaaggatgaaaaggtgttagatataatacttgacaaaaaaaggaattctgaggtaaagtatatggtgaatgatctacg |
8225591 |
T |
|
| Q |
133 |
tcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagatta |
232 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||| | |
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| T |
8225590 |
tcaattttcttttcaaggttcgtggcttgattcaatagaaaaattatttgttaataat-ctacacgatgatgttagttctttggttaagttggaagatca |
8225492 |
T |
|
| Q |
233 |
tgaaaatcaattgtgtaatgaacatatgtttct |
265 |
Q |
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|||||||||| ||||||| ||||||| |||||| |
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| T |
8225491 |
tgaaaatcaactgtgtaaggaacataggtttct |
8225459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 7591223 - 7591389
Alignment:
| Q |
42 |
atttattacgtcttcttaa-gaatgaaaaagtgttagatat----acttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaa |
136 |
Q |
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||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7591223 |
atttattgcgtgttcttaaagaatgaataagtgttagatatatatacttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacgtcaa |
7591322 |
T |
|
| Q |
137 |
ttatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatg |
204 |
Q |
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||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||| |
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| T |
7591323 |
ttatcatttcaaggttcgtggcttgattcaatagaaaagttatttgctaataat-ctacataatgatg |
7591389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 380 - 438
Target Start/End: Original strand, 44105684 - 44105742
Alignment:
| Q |
380 |
atggaaaccttcttacaacaacgtgaagctaaacaaacagagattgaacaagtttttat |
438 |
Q |
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| T |
44105684 |
atggaaaccttcatacaacaatgtgaagctaaacaaacagagattgaacaagtctttat |
44105742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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