View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_64 (Length: 205)
Name: NF15777_low_64
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_64 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 30941915 - 30941750
Alignment:
| Q |
25 |
tcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgtttc |
124 |
Q |
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| T |
30941915 |
tcatgttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgtcgctactgaaatggttgttgatgatgtttc |
30941816 |
T |
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| Q |
125 |
ttgctccaaattcttgccatgaaaattgctaccactagtagacattttcttgtgtgtgtgatgatg |
190 |
Q |
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| T |
30941815 |
ttgctccaaattcttgccatgaaaattgctaccactagtagacattttcttgtgtgtgtgttgatg |
30941750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 37974981 - 37974937
Alignment:
| Q |
38 |
gtattgaccaaaagtgttccaatctcttctcttttgtgattcgta |
82 |
Q |
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| T |
37974981 |
gtattgaccaaaagtgttccaatcacgtctcttttgtgactcgta |
37974937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 39556422 - 39556357
Alignment:
| Q |
29 |
gttgttcaagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaagtgt |
94 |
Q |
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| T |
39556422 |
gttgtttaagtattgaccaaaagtgttccaatctcttctcttttgagattcatagcggctaagtgt |
39556357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 32002342 - 32002397
Alignment:
| Q |
36 |
aagtattgaccaaaagtgttccaatctcttctcttttgtgattcgtagcgactaag |
91 |
Q |
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| T |
32002342 |
aagtattgtccaaaagtgttccaatctcttctcttttgtgactcgtatcgactaag |
32002397 |
T |
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