View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15777_low_65 (Length: 204)

Name: NF15777_low_65
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15777_low_65
NF15777_low_65
[»] chr4 (1 HSPs)
chr4 (20-191)||(18925371-18925542)
[»] chr7 (15 HSPs)
chr7 (21-191)||(4845642-4845812)
chr7 (20-174)||(4864234-4864388)
chr7 (21-68)||(4637275-4637322)
chr7 (21-76)||(4673113-4673168)
chr7 (21-76)||(4667351-4667406)
chr7 (21-76)||(4696820-4696875)
chr7 (132-174)||(4667253-4667295)
chr7 (21-62)||(4644131-4644172)
chr7 (21-62)||(4783465-4783506)
chr7 (21-62)||(4815894-4815935)
chr7 (129-173)||(4783573-4783617)
chr7 (129-173)||(4816002-4816046)
chr7 (132-191)||(4637152-4637211)
chr7 (21-60)||(4653922-4653961)
chr7 (120-174)||(4696919-4696973)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 18925371 - 18925542
Alignment:
Q  20 cgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcagcagt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925371 cgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcagcagt 18925470  T
Q  120 gacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925471 gacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 18925542  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 4845642 - 4845812
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcagcagtg 120  Q
    ||||| ||||||||||||||||||||||||||||   |||||| |||| || |||| || ||| ||||| |||| ||||   ||||| ||||  | | ||    
T  4845642 gtgtcgatgccttcttttctctattacacaaacccagatgacttaaattattatttcaaattaattggctttgacaacagagaatacgaaattcgtaatg 4845741  T
Q  121 acaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 191  Q
    | ||||  || |||| ||||||||||||||  |||||||| |||||||||| || |||| |||| ||||||    
T  4845742 ataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggt 4845812  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 4864388 - 4864234
Alignment:
Q  20 cgtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcatttaaagttacttggccttgaaaacatgaaatacaaaatcagcagt 119  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||  || |||| || | ||||| | |||| |||| ||| ||| || |    |      
T  4864388 cgtgtctatgccttcttttctatattacacaaacctcaatgacccaaaatattatttgaaatcacttgactttgacaacacgaactaccaagttcttaac 4864289  T
Q  120 gacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccac 174  Q
    ||||||| |||||||||||||||||||||||  || ||||| | |||||||||||    
T  4864288 gacaaagcgttagagacggtttatagagtcaatgtcggtgaaagtcaagttccac 4864234  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 4637322 - 4637275
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaat 68  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||    
T  4637322 gtgtcaatgccttcttttctctattacacaaacctcaatgacccaaat 4637275  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 4673168 - 4673113
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcattt 76  Q
    ||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  4673168 gtgtcaatgccttcttttctctattacacaaacctcagtgacccaaattatcattt 4673113  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 4667406 - 4667351
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcattt 76  Q
    ||||| ||||| ||||||||||||||||||||||||| |||| ||||| |||||||    
T  4667406 gtgtctatgccgtcttttctctattacacaaacctcagtgacccaaattatcattt 4667351  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 4696820 - 4696875
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgactcaaatcatcattt 76  Q
    ||||| ||||||||||||||||||||||||||||||| |||| ||||  |||||||    
T  4696820 gtgtcaatgccttcttttctctattacacaaacctcagtgacccaaaatatcattt 4696875  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 4667295 - 4667253
Alignment:
Q  132 gagacggtttatagagtcagcgttggtgataatcaagttccac 174  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  4667295 gagacggtttatagagtcagcgttggtgaaagtcaagttccac 4667253  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 4644172 - 4644131
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgac 62  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  4644172 gtgtctatgccttcttttctctattacacaaacctcagtgac 4644131  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 4783465 - 4783506
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgac 62  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  4783465 gtgtctatgccttcttttctctattacacaaacctcagtgac 4783506  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 4815894 - 4815935
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatgac 62  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  4815894 gtgtctatgccttcttttctctattacacaaacctcagtgac 4815935  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 4783573 - 4783617
Alignment:
Q  129 ttagagacggtttatagagtcagcgttggtgataatcaagttcca 173  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||    
T  4783573 ttagagacggtttatagagtcaacgttggtcaaaatcaagttcca 4783617  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 4816002 - 4816046
Alignment:
Q  129 ttagagacggtttatagagtcagcgttggtgataatcaagttcca 173  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||    
T  4816002 ttagagacggtttatagagtcaacgttggtcaaaatcaagttcca 4816046  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 4637211 - 4637152
Alignment:
Q  132 gagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggt 191  Q
    |||| |||||||||||||| ||||||| | ||||||||||||| |||| |||| ||||||    
T  4637211 gagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggt 4637152  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 4653961 - 4653922
Alignment:
Q  21 gtgtccatgccttcttttctctattacacaaacctcaatg 60  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  4653961 gtgtctatgccttcttttctctattactcaaacctcaatg 4653922  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 4696919 - 4696973
Alignment:
Q  120 gacaaagtgttagagacggtttatagagtcagcgttggtgataatcaagttccac 174  Q
    ||||||| |||||||||||||||||||||||  || ||||  |||||||||||||    
T  4696919 gacaaagcgttagagacggtttatagagtcaatgtgggtggcaatcaagttccac 4696973  T

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