View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_8 (Length: 626)
Name: NF15777_low_8
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 13 - 608
Target Start/End: Complemental strand, 26325183 - 26324588
Alignment:
| Q |
13 |
tcatcaatgtgagtccaatcgaaccaacgggatcgaaccttcctcaaggatgttcatccataggtatgtctagctattggttggacctgcctatggatga |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26325183 |
tcatcaatgtgagtccaatcgaaccaacgggatcgaaccttcctcaaggatgttcatccataggtatgtctagctattggttggacctgcctatggatga |
26325084 |
T |
|
| Q |
113 |
agctgagaaagaaagagtcaaaaaaggagatttacaaagttccaaagcttatgttcatgtaaaaccaatgcttggaggaactttcactgatttagtcatg |
212 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26325083 |
agctgcgaaagaaagagtcaaaaaaggagatttacaaagttccaaagcttatgttcatgtaaaaccaatgcttggaggaactttcactgatttagtcatg |
26324984 |
T |
|
| Q |
213 |
tgggttttctatccatttaatgggggtgcaagagcaaaagttgcattcatgaacattccattgaaaagtaaaggtgaacatgttggagactgggagcatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |
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| T |
26324983 |
tgggttttctatccatttaatgggggtgcaagagcaaaagttgcattcatgaacattccattgaggactaaaggtgaacatgtgggagactgggagcatg |
26324884 |
T |
|
| Q |
313 |
tgacattaagggtaagcaactttagtggagaattatggaaggtttatttatcacaacatagcaagggtcaatgggttgatgcatgtgaccttgagtttaa |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26324883 |
tgacattaagggtaagcaactttagtggagaattatggatggtttatttatcacaacatagcaagggtcaatgggttgatgcatgtgaccttgagtttaa |
26324784 |
T |
|
| Q |
413 |
aaatggtaataggcctgtggtttattcttcattgcatggtcatgcattgtttcctaggccagggtgtgttatgcaaggtgttagagggtttggtataagg |
512 |
Q |
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| T |
26324783 |
aaatggtaataggcctgtgctttattcttcattgcatggtcatgcattgtttcctaggccagggtgtgttatgcaaggtgttagagggtttggtataagg |
26324684 |
T |
|
| Q |
513 |
aatgatgcatgtaagagtgatttggtgatggatatggttaaagggtatgaaatagttgctgctgaatattttggatcagaaattagagagccacct |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26324683 |
aatgatgcatgtaagagtgatttggtgatggatatggttaaagggtatgaaatagttgctgctgaatatttgggatcagaaattagagagccacct |
26324588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 120 - 334
Target Start/End: Complemental strand, 26338326 - 26338112
Alignment:
| Q |
120 |
aaagaaagagtcaaaaaaggagatttacaaagttccaaagcttatgttcatgtaaaaccaatgcttggaggaactttcactgatttagtcatgtgggttt |
219 |
Q |
| |
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||||| |||||||| ||||| || |||||||| | || | ||||| ||||| ||||||||| ||||||||| ||||||||| | | ||||||||||| |
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| T |
26338326 |
aaagagagagtcaagaaaggtaatctacaaagtgcagaatcatatgtacatgtgaaaccaatgtatggaggaacattcactgatattgccatgtgggttt |
26338227 |
T |
|
| Q |
220 |
tctatccatttaatgggggtgcaagagcaaaagttgcattcatgaacattccattgaaaagtaaaggtgaacatgttggagactgggagcatgtgacatt |
319 |
Q |
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| T |
26338226 |
tttatcctttcaatggagctggaagagctaaagtagagtttatagatattaaattgggaaaagcaggtgaacatgttggtgattgggagcatgtgacatt |
26338127 |
T |
|
| Q |
320 |
aagggtaagcaactt |
334 |
Q |
| |
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||||||||| ||||| |
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| T |
26338126 |
aagggtaagtaactt |
26338112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 26356202 - 26356305
Alignment:
| Q |
132 |
aaaaaaggagatttacaaagttccaaagcttatgttcatgtaaaaccaatgcttggaggaactttcactgatttagtcatgtgggttttctatccattta |
231 |
Q |
| |
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||||||||| ||||||||||| | || ||||||| ||||| |||||||||||||||||||| ||||| ||| | | ||||||| |||| || || |||| |
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| T |
26356202 |
aaaaaaggaaatttacaaagtgcagaatcttatgtacatgtgaaaccaatgcttggaggaaccttcacagatattgccatgtggattttttaccctttta |
26356301 |
T |
|
| Q |
232 |
atgg |
235 |
Q |
| |
|
|||| |
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| T |
26356302 |
atgg |
26356305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 26332841 - 26332791
Alignment:
| Q |
284 |
aggtgaacatgttggagactgggagcatgtgacattaagggtaagcaactt |
334 |
Q |
| |
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||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
26332841 |
aggtgaacatgttggtgattgggagcatgtgacattaagggtaagtaactt |
26332791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 459
Target Start/End: Original strand, 26356354 - 26356526
Alignment:
| Q |
284 |
aggtgaacatgttggagactgggagcatgtgacattaagggtaagcaactttagtggagaattatggaaggtttatttatcacaacatagcaagggtcaa |
383 |
Q |
| |
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|||||||||| |||| || |||||||||||||||||||||||||| || || ||| |||||||| | | ||||| ||||||||||| || ||| || |
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| T |
26356354 |
aggtgaacatattggtgattgggagcatgtgacattaagggtaagtaatttggatggtaaattatggcatttatatttctcacaacatagtaaaggtgaa |
26356453 |
T |
|
| Q |
384 |
tgggttgatgcatgtgaccttgagtttaaaaatggtaataggcctgtggtttattcttcattgcatggtcatgcat |
459 |
Q |
| |
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||| ||||| | | | | ||||||||| || ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
26356454 |
tggattgattcttctcagcttgagtttcaa---tcaaatagacctgttttttattcttcattgcatggtcatgcat |
26356526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 457
Target Start/End: Complemental strand, 28315336 - 28315163
Alignment:
| Q |
284 |
aggtgaacatgttggagactgggagcatgtgacattaagggtaagcaactttagtggagaattatggaaggtttatttatcacaacatagcaagggtcaa |
383 |
Q |
| |
|
|||||||||| |||| || ||||||||||| || ||||||||||| || || | |||||| ||| | |||||||| ||||||||||| || |||||| |
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| T |
28315336 |
aggtgaacatattggtgattgggagcatgtaactttaagggtaagtaatttcaatggagagttaaaaagagtttatttttcacaacatagtaatggtcaa |
28315237 |
T |
|
| Q |
384 |
tgggttgatgcatgtgaccttgagtttaaaaatggtaataggcctgtggtttattcttcattgcatggtcatgc |
457 |
Q |
| |
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||||||||| | | || |||| ||| ||| ||| |||| || |||| |||||||||||| |||||||||| |
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| T |
28315236 |
tgggttgattcttcagaagttgaatttcaaagtggaaataaaccagtggcttattcttcattaaatggtcatgc |
28315163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 26348074 - 26348030
Alignment:
| Q |
284 |
aggtgaacatgttggagactgggagcatgtgacattaagggtaag |
328 |
Q |
| |
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||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
26348074 |
aggtgaacatgttggtgattgggagcacgtgacattaagggtaag |
26348030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 54949417 - 54949461
Alignment:
| Q |
284 |
aggtgaacatgttggagactgggagcatgtgacattaagggtaag |
328 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54949417 |
aggtgaacatgttggtgactgggagcatgtgacattaagggtaag |
54949461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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