View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15777_low_9 (Length: 605)
Name: NF15777_low_9
Description: NF15777
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15777_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 13770930 - 13770470
Alignment:
| Q |
18 |
cgtgtttggctaggtactttctcaacagctgaagaagcagctagagcctacgacactgcggccaagcgcattcgcggcgacaaggctaagctcaatttcc |
117 |
Q |
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| T |
13770930 |
cgtgtttggctaggtactttctcaacagctgaagaagcagctagagcctacgacaccgcggccaagcgcattcgcggcgacaaggctaagctcaatttcc |
13770831 |
T |
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| Q |
118 |
ctgacacttctgctgatgctgctgtcaccgctcctccagcaaagaagcagtgcgttagctctgatcaagccagttcccaagctagctctgagtcagctgg |
217 |
Q |
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| T |
13770830 |
ctgacactcctgctgtt---------accgctcctccagcaaagaagcagtgtgttagctctgatcaagccagttcccaagctagctctgagtcagctgg |
13770740 |
T |
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| Q |
218 |
gtctgggtttgagcttgatgaggaaatggaaatcaagcagaaaatgtctgaccttgaatggatccttggcttggatagtgacattcctcaggcccaagcc |
317 |
Q |
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| T |
13770739 |
gtctgggtttgagcttgatgaggaaatggaaatcaagcagaaaatgtcggaccttgaatggatccttggcttggatagtgacattcctcaggcccaagcc |
13770640 |
T |
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| Q |
318 |
ccaacccaagttgaagctcagcccgagccggagcctgtgcctttcaccatgcctgctgattgggacaacagcttcatggacttttggacttctgaagaca |
417 |
Q |
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| T |
13770639 |
ccaacccaagttgaagctcagcccgagccggagcctgtgcctttcaccatgcctgctgattgggacagcatcttcatggacttttggacttctgaagaca |
13770540 |
T |
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| Q |
418 |
tggttgatcccatccgtcacctgctttataactaagaaactaataattattattgcaaaaatggaccacc |
487 |
Q |
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| T |
13770539 |
tggttgatcccatccgtcacctgttttataactaagaaactaataattattattgcaaaaatggaccacc |
13770470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 534 - 600
Target Start/End: Complemental strand, 13770423 - 13770357
Alignment:
| Q |
534 |
aaatttcgtgactgtataaactatgttgtttgtgttcttcctttatggtgttgtctcctttgcttct |
600 |
Q |
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| T |
13770423 |
aaatttcgtgactgtataaactatgttgtttgtgttcttcctttatggtgttgtctcttttgtttct |
13770357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 4958379 - 4958470
Alignment:
| Q |
95 |
cgacaaggctaagctcaatttccctgacacttctgctgatgctgctgtcaccgctcctccagcaaagaagcagtgcgttagctctgatcaagc |
187 |
Q |
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| T |
4958379 |
cgacaagactaagctcaatttccctgaaactcatgctgatgttgttg-caccactcctccaacaaagaagcagtgtcttagccctgatcaagc |
4958470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 4958302 - 4958339
Alignment:
| Q |
18 |
cgtgtttggctaggtactttctcaacagctgaagaagc |
55 |
Q |
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| T |
4958302 |
cgtgtttggcttggtactttctcaacagttgaagaagc |
4958339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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