View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15778_high_1 (Length: 771)
Name: NF15778_high_1
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15778_high_1 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: scaffold0136 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 770
Target Start/End: Complemental strand, 19550 - 18808
Alignment:
| Q |
18 |
aaaaagagattattttgctcagtatgggtcatgcagaccattgtgtgcacatgatgctaaagaacattctttctcacaattgttcagtaacatcaatcat |
117 |
Q |
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| T |
19550 |
aaaaagagattattttgctcagtctgggtcatgcagatcattgtgtgcatatgatgctaaagaacattctttctcacaattgttcagtaacatcaatcat |
19451 |
T |
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| Q |
118 |
acaacatgagtcctgaaccgaagaacttttcattagattagcaatttcaaactaaatcttttcctcacctgcattga---atgccaacttatcatgctga |
214 |
Q |
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| T |
19450 |
acaacatgagtcctgaacagaagaacttttcattagattagcaatttcaaactaaatcttttcctcacctgcattgatgaatgccaacttatcatgctga |
19351 |
T |
|
| Q |
215 |
acatcaattatggcacctgtagtgacgaggaagggtctccctttaatactattattcataatattagacaccaattgaagtattaaaaggtgaaggttgg |
314 |
Q |
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| T |
19350 |
acatcaattatggcacctgtagtgacgaggaagggtctccctt-aataatattattcataatattagacaccaattgaagtattaaaaggtgaagtttgg |
19252 |
T |
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| Q |
315 |
ggtcaataaacgatttgaaacatgaaaatagtctagtttccctcgaggtgacataggataattaagcttaactgtttttgtcaatgataccaccactaaa |
414 |
Q |
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| T |
19251 |
ggtcaataaacgatttgaaacatgaaaatagtctagtttccttcgaggtgacataggataattaagcttaactgtttttgtcaatgataccaccactaaa |
19152 |
T |
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| Q |
415 |
acatgacatctcgttggttcaaaacacgcttatgcatctctgaaatgagagataggtcacattaattttcatagaaaagaaagtgatttggataggttta |
514 |
Q |
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| T |
19151 |
atatgacatctcgttggttcaaaacacgcttatgcatctctgaaatgggagataggtcacattaattttcatagaaaacaaagtgaatttg--------- |
19061 |
T |
|
| Q |
515 |
tctatgattctgatgaaaccaaaatgccaagacacctttatattattgtttattttataccaa--------cctaaaaaatctaatctttttagaaaatt |
606 |
Q |
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| T |
19060 |
-----gattctgatgaaaccaaaatactaagatacctatatattattgtttattttataccaacaatcagcccataaaaatctaatatttttagataatt |
18966 |
T |
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| Q |
607 |
aatttagataaaagaattgataatcaacactagtatctataggcttcgatactctttattacatgatagaaaccgtgcacacacggtctattattaagaa |
706 |
Q |
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| T |
18965 |
agtttagataaaagaattgataatcaacactag------taagcttagatactctttattacatgatagaaaccgtgcacacacggtctattattaagaa |
18872 |
T |
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| Q |
707 |
ggactatgtttgagatcccctatcttggagtggtggatattcaaatattattgttagtgatgat |
770 |
Q |
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| T |
18871 |
ggactatgtttgagatcccctatcttggagtggtggatattcaaatattattgttagtgatgat |
18808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 23294243 - 23294358
Alignment:
| Q |
137 |
gaagaacttttcattagattagcaatttcaaactaaatcttttcctcacctgcattgaatgccaacttatcatgctgaacatcaattatggcacctgtag |
236 |
Q |
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|||| |||||||||||| ||||||| |||||| | || |||||| ||| |||| |||||||||||| |||||| ||||||||||||||| |||| || |
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| T |
23294243 |
gaaggacttttcattagtttagcaagttcaaattcaacagtttccttaccaacattaaatgccaacttaccatgcttaacatcaattatggctcctgcag |
23294342 |
T |
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| Q |
237 |
tgacgaggaagggtct |
252 |
Q |
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| T |
23294343 |
tagcaaggaagggtct |
23294358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 25783564 - 25783679
Alignment:
| Q |
137 |
gaagaacttttcattagattagcaatttcaaactaaatcttttcctcacctgcattgaatgccaacttatcatgctgaacatcaattatggcacctgtag |
236 |
Q |
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|||| ||||||||||| ||||||| |||||| |||| |||||| ||| |||| |||||||||||| |||||| ||||||||||||||| |||| || |
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| T |
25783564 |
gaaggacttttcattaatttagcaagttcaaattaaacagtttccttaccaacattaaatgccaacttaccatgcttaacatcaattatggctcctgcag |
25783663 |
T |
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| Q |
237 |
tgacgaggaagggtct |
252 |
Q |
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| T |
25783664 |
tagcaaggaagggtct |
25783679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 24320120 - 24320047
Alignment:
| Q |
52 |
agaccattgtgtgcacatgatgctaaagaacattctttctcacaattgttcagtaacatcaatcatacaacatga |
126 |
Q |
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| T |
24320120 |
agaccattgtgtgcacataatgctaaaaaacattctttcacacga-tgatcaatcacatcaatcatacaacatga |
24320047 |
T |
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