View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15778_low_10 (Length: 265)
Name: NF15778_low_10
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15778_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 15020951 - 15020716
Alignment:
| Q |
16 |
aaaggaaaagtagt-aagagatgcattaacaagtctaaagctgaaatctttaatcatgaaattgtgagagcctgcaaatatataatttgtataaactatg |
114 |
Q |
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|||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15020951 |
aaaggaaaagtagttaaaagatgcatttacaagtctaaagctgaaatctttaatcatgaaattgtgagaacctgcaaatatataatttgtataaactatg |
15020852 |
T |
|
| Q |
115 |
gattcctgggccaaataaacaaggaaaagctaatatcatgagacagagattccctgaacaaatgcaaaatcaattgaactttcacatgtgtaaggtctaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15020851 |
gattcctgggccaaataaacaaggaaaagctaatatcatgagacaaagatgccctgaacaaatgcaaaatcaattgaactttcacatgtgtaaggtctaa |
15020752 |
T |
|
| Q |
215 |
agaaattgtaactacaatataccaaatgcaaaacct |
250 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
15020751 |
agaaattgtaactacaatataccaaatgcaagacct |
15020716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 15002991 - 15003222
Alignment:
| Q |
16 |
aaaggaaaagtagt-aagagatgcattaacaagtctaaagctgaaatctttaatcatgaaattgtgagagcctgcaaatatataatttgtataaactatg |
114 |
Q |
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| T |
15002991 |
aaaggataagtagttaaaagatgcatttacaagtctaaagctaaaagctttaatcgtgaaattgtgagaacctgc--atatataatctgtagatactatg |
15003088 |
T |
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| Q |
115 |
gattcctgggccaaataaacaaggaaaagctaatatcatgagacagagattccctgaacaaatgcaaaatcaattgaactttcacatgtgtaaggtctaa |
214 |
Q |
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| T |
15003089 |
gattattgagccaaataaacaa-gaagaactaataccatgagaca-acattccctaaccaaatgcaagaccatttgaactttcacatgaacaaggtctga |
15003186 |
T |
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| Q |
215 |
agaaattgtaactacaatataccaaatgcaaaacct |
250 |
Q |
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| T |
15003187 |
aaagattgtcactacaatatactaaatgcaagacct |
15003222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 15014386 - 15014220
Alignment:
| Q |
92 |
atatataatttgtataaactatggattcctgggccaaataaacaaggaaaagctaatatcatgagacagagattccctgaacaaatgcaaaatcaattga |
191 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||| ||| | |||| | |||||||| |||| | || ||||||||| | || |||| |
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| T |
15014386 |
atatgtaatttgtatatactatggattcttgggccaaataaacaaagaagaactaacaggatgagacaagcattctcagaccaaatgcaagaccatttga |
15014287 |
T |
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| Q |
192 |
actttcacatgt------gt--aaggtctaaagaaattgtaactacaatataccaaatgcaaaacct |
250 |
Q |
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| T |
15014286 |
actttcacatgtacaacagtacaaggtctaaagaaattgtaactactatatacaaaatgcaagacct |
15014220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 15009407 - 15009290
Alignment:
| Q |
103 |
gtataaactatggattcctgggccaaataaacaaggaaaagctaatatcatgagacagagattccctgaacaaatgcaaaatcaattgaactttcacatg |
202 |
Q |
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||||| ||||||||||| ||| ||| |||||||||||||| |||| | ||||||||| | |||||| || |||||||| | || ||||||||||||||| |
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| T |
15009407 |
gtatatactatggattcttgg-ccacataaacaaggaaaaactaacaccatgagacaaacattcccggactaaatgcaagaccatttgaactttcacatg |
15009309 |
T |
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| Q |
203 |
tgtaaggtctaaagaaatt |
221 |
Q |
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| T |
15009308 |
tataaggcctaaagaaatt |
15009290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 242
Target Start/End: Complemental strand, 15024968 - 15024753
Alignment:
| Q |
34 |
gatgcattaacaagtctaaagctgaaatctttaatcatgaaattgtga-----gagcctgcaaatatataatttgtataaactatggattcctgggccaa |
128 |
Q |
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|||||||| |||||||||||| ||||| || |||||||||||||| || || ||||| ||| ||||||||||| ||||||||||| |||||||| |
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| T |
15024968 |
gatgcatttacaagtctaaagatgaaagctataatcatgaaattgagattggagaatctgca--tatgtaatttgtatacactatggattcttgggccaa |
15024871 |
T |
|
| Q |
129 |
ataaacaaggaaaagctaatatcatgagacagagattccctgaacaaatgcaaaatcaattgaactttcacatgt------gt--aaggtctaaagaaat |
220 |
Q |
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||||||||| | |||| | |||||| || | || | || ||||||||| | || |||||||||||||||| || ||||||||||||||| |
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| T |
15024870 |
ataaacaag----aactaacaccatgagtcaagcaatctcagaccaaatgcaagaccatttgaactttcacatgtacaacagtacaaggtctaaagaaat |
15024775 |
T |
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| Q |
221 |
tgtaactacaatataccaaatg |
242 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
15024774 |
tgtaactacaatatacaaaatg |
15024753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 29468779 - 29468917
Alignment:
| Q |
112 |
atggattcctgggccaaataaacaaggaaaagctaatatcatgagacagagattccctgaacaaatgcaaaatcaattgaactttcacatgtgtaaggtc |
211 |
Q |
| |
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||||||| |||||||||||||||| ||| | |||||| ||||||||| | ||||| ||| |||||| || | || |||||||||||||||| ||| | |
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| T |
29468779 |
atggattattgggccaaataaacaaagaagaactaataccatgagacaaacattccttgaccaaatgaaataccatttgaactttcacatgtacaagttt |
29468878 |
T |
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| Q |
212 |
taaagaaattgtaactacaatataccaaatgcaaaacct |
250 |
Q |
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| T |
29468879 |
tgaagaaattgtcactacaatatactaaatgcaagacct |
29468917 |
T |
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