View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15778_low_2 (Length: 453)
Name: NF15778_low_2
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15778_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Complemental strand, 26158961 - 26158533
Alignment:
| Q |
12 |
ttcacaaaaacaccagctacacctctgatacaagccccaaaaccagtgcgtcagtttcggaagtagtacagagtatgtgaattcgatgtgtttagagtat |
111 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26158961 |
ttcacaaaaacaccagctacacctctgatacatgccccaaaaccagtgcgtcagtttcggaagtagtacagagtatgtgaattcgatgtgtttagagtat |
26158862 |
T |
|
| Q |
112 |
aattaattttaagatgtgattacaaaagtagagtatatgaagtgatacattgtctaggtgtttcgatagcattaattatgaatataaattttggttttca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
26158861 |
aattaattttaagatgtgattacaaaagtagagtatatgaagtgatacattgtctatgtgtttcgatagcatta----tgaatataaattttggttttca |
26158766 |
T |
|
| Q |
212 |
ctatttggttttcagaggtaagcaaagcttaaccaattattacctttgtcatgattcaaactcaagctctccataacgattcagacattgtccgaacctc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26158765 |
ctatttggttttcagaggtaagcaaagcttaaccaattattacttttgtcatgattcaaactcaagctctccataacgattcagacattgtccgaacctc |
26158666 |
T |
|
| Q |
312 |
attaaccacttaagaattatgaaactgaattataatattttattttcaaaattttaaaccaattcataatgcaagttgaactacgaggtattatctagtt |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26158665 |
attagccacttaagaattatgaaactgaattataatattttattttcaaaatttgaaaccaattcataatgcaagttgaactatgaggtattatctagtt |
26158566 |
T |
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| Q |
412 |
aatgcttcattcttgcaatctcctatgtttctg |
444 |
Q |
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| T |
26158565 |
aatgcttcattcttgcaatctcttatgtttctg |
26158533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 26272207 - 26272251
Alignment:
| Q |
12 |
ttcacaaaaacaccagctacacctctgatacaagccccaaaacca |
56 |
Q |
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||||||||||||||| |||||||||| |||| ||||||||||||| |
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| T |
26272207 |
ttcacaaaaacaccacctacacctcttatacgagccccaaaacca |
26272251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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