View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15778_low_3 (Length: 372)
Name: NF15778_low_3
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15778_low_3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 26158931 - 26159289
Alignment:
| Q |
15 |
gtatcataggtgtagctggtgtttttgtgaaggaattgtctggcttggtgtggaatgagatgcaggttcatgaaagggaagcgcgctatgttgaaggcaa |
114 |
Q |
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| T |
26158931 |
gtatcagaggtgtagctggtgtttttgtgaaggaattgtctggcttggtgtgcaatgagatgcaggttcatgaaagggaagcgtgctatgttgaaggcaa |
26159030 |
T |
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| Q |
115 |
tagaatgtctgcagcaactcaaaatttcaagtgtgaccctattttctgactccaagatacttgttgatgcaattcatgctcgggttgaaggcctatctga |
214 |
Q |
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| T |
26159031 |
tagaatgtctgcagcaactcgaaatttcaagtgtgaccctattttctgactccaagatacttgttgatgcaattcatcctcgggttgaaggcctatctga |
26159130 |
T |
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| Q |
215 |
atttaatatgattgttagccgtattagtccttgtttagaattgcaatgtaactttgaggtgaagtttatacggagacaagcgaatttggcagctcatggt |
314 |
Q |
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| T |
26159131 |
atttaatatgattgttagccgtattagtccttgtttagaattgcaatgtaacttttaggtgaagtttatacggagacaagcgaatttggtagctcatagt |
26159230 |
T |
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| Q |
315 |
ttagctaggg-ttgccagttcttattctagccaccaagttcatgattatgttcctcctt |
372 |
Q |
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| T |
26159231 |
ttagctagggtttgccaattcttattctagccaccaagttcatgattatgttcctcctt |
26159289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 22 - 356
Target Start/End: Complemental strand, 26272230 - 26271918
Alignment:
| Q |
22 |
aggtgtagctggtgtttttgtgaaggaattgtctggcttggtgtggaatgagatg----caggttcatgaaagggaagcgc--gctatgttgaaggcaat |
115 |
Q |
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| T |
26272230 |
aggtgtaggtggtgtttttgtgaaggaattgtctggtttggtgtgcaatgagatggctgcaggttcatgaaggggaagtgcttgctatgttgaagacaat |
26272131 |
T |
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| Q |
116 |
agaatgtctgcagcaactcaaaatttcaagtgtgaccctattttct-gactccaagatacttgttgatgcaattcatgctcgggttgaaggcctatctga |
214 |
Q |
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| T |
26272130 |
agaatggctgcagaaactcgaaatttcaagtgtgaccctatttttttgactccgagata-----------------tgctcgagttgaagacctatctga |
26272048 |
T |
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| Q |
215 |
atttaatatgattgttagccgtattagtccttgtttagaattgcaatgtaactttgaggtgaagtttatacggagacaagcgaatttggcagctcatggt |
314 |
Q |
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| T |
26272047 |
atttaa------------ccgtattaggcgttgtttagaattgcaatgtaactttgaggtgaagtttatacggaggcaagcgaatttgttagctcatagt |
26271960 |
T |
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| Q |
315 |
ttagctagggttgccagttcttattctagccaccaagttcat |
356 |
Q |
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| T |
26271959 |
ttagctagggttgccaattcttatgctagccatcaagttcat |
26271918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 245 - 367
Target Start/End: Original strand, 5877785 - 5877907
Alignment:
| Q |
245 |
ttgtttagaattgcaatgtaactttgaggtgaagtttatacggagacaagcgaatttggcagctcatggtttagctagggttgccagttcttattctagc |
344 |
Q |
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||||||||| |||||||||||||||||| ||||||||||| |||| ||||||||||||| ||||||| |||||||||| | || || || |||| ||||| |
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| T |
5877785 |
ttgtttagatttgcaatgtaactttgagatgaagtttatatggaggcaagcgaatttggtagctcatagtttagctagagctgtcaatttttatgctagc |
5877884 |
T |
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| Q |
345 |
caccaagttcatgattatgttcc |
367 |
Q |
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| T |
5877885 |
cactaaattcatgattatgttcc |
5877907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 369
Target Start/End: Complemental strand, 29462929 - 29462815
Alignment:
| Q |
255 |
ttgcaatgtaactttgaggtgaagtttatacggagacaagcgaatttggcagctcatggtttagctagggttgccagttcttattctagccaccaagttc |
354 |
Q |
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| T |
29462929 |
ttgcaatgtaactttgaagtaaagtttatttgcagacaagagcatatggttgctcatagcttcgctagggaggccaattcttatgctagccaccatgttc |
29462830 |
T |
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| Q |
355 |
atgattatgttcctc |
369 |
Q |
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| T |
29462829 |
atgattatgttcctc |
29462815 |
T |
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Back To:
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