View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15778_low_4 (Length: 359)

Name: NF15778_low_4
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15778_low_4
NF15778_low_4
[»] chr6 (28 HSPs)
chr6 (17-346)||(5755506-5755835)
chr6 (17-346)||(5760984-5761313)
chr6 (119-336)||(5852913-5853130)
chr6 (17-336)||(5882975-5883294)
chr6 (17-233)||(5890018-5890228)
chr6 (116-239)||(5820640-5820763)
chr6 (32-271)||(5827005-5827244)
chr6 (116-346)||(5880355-5880585)
chr6 (119-346)||(5829978-5830205)
chr6 (17-75)||(5763984-5764042)
chr6 (17-75)||(5767519-5767577)
chr6 (17-75)||(5771054-5771112)
chr6 (17-75)||(5774589-5774647)
chr6 (17-75)||(5778124-5778182)
chr6 (17-75)||(5781659-5781717)
chr6 (17-75)||(5785194-5785252)
chr6 (17-75)||(5788729-5788787)
chr6 (17-75)||(5792264-5792322)
chr6 (17-75)||(5795799-5795857)
chr6 (17-75)||(5799334-5799392)
chr6 (17-75)||(5802869-5802927)
chr6 (17-75)||(5806404-5806462)
chr6 (17-75)||(5809939-5809997)
chr6 (17-75)||(5813474-5813532)
chr6 (17-75)||(5817009-5817067)
chr6 (17-75)||(5820544-5820602)
chr6 (17-99)||(5880247-5880329)
chr6 (188-255)||(5885096-5885163)
[»] scaffold0087 (10 HSPs)
scaffold0087 (18-346)||(55191-55519)
scaffold0087 (17-346)||(19584-19913)
scaffold0087 (17-346)||(29932-30261)
scaffold0087 (17-336)||(12550-12869)
scaffold0087 (17-333)||(39990-40305)
scaffold0087 (119-346)||(34050-34277)
scaffold0087 (31-203)||(857-1030)
scaffold0087 (31-203)||(15746-15919)
scaffold0087 (31-203)||(5562-5736)
scaffold0087 (31-203)||(22677-22851)
[»] scaffold0019 (1 HSPs)
scaffold0019 (116-336)||(172930-173154)
[»] scaffold0127 (1 HSPs)
scaffold0127 (116-239)||(16424-16550)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 5755506 - 5755835
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5755506 tcttcaagtttgaaatacttggatttttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgatgatattcggg 5755605  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5755606 tgtgggattttagtttcaacaatttgaatggttcagtgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 5755705  T
Q  217 ttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatat 316  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  5755706 ttctttttgttcatcctcatctcaaagtttaattcatttagacttgtctagtaatatgttagtggggccagttccagattgttgggagaagtttcaatct 5755805  T
Q  317 ttaacagttctaaatttggccgagaataat 346  Q
    |||| ||||||||||||||| |||||||||    
T  5755806 ttaagagttctaaatttggcagagaataat 5755835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 5760984 - 5761313
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5760984 tcttcaagtttgaaatacttggatttttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgatgatattcggg 5761083  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5761084 tgtgggattttagtttcaacaatttgaatggttcagtgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 5761183  T
Q  217 ttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatat 316  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  5761184 ttctttttgttcatcctcatctcaaagtttaattcatttagacttgtctagtaatatgttagtggggccagttccagattgttgggagaagtttcaatct 5761283  T
Q  317 ttaacagttctaaatttggccgagaataat 346  Q
    |||| ||||||||||||||| |||||||||    
T  5761284 ttaagagttctaaatttggcagagaataat 5761313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 119 - 336
Target Start/End: Original strand, 5852913 - 5853130
Alignment:
Q  119 tgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtctt 218  Q
    ||||||||||||||||| ||||||||||||| | ||||| ||||||||||  ||   ||||||||||||||||||||||||||||||||| || ||||||    
T  5852913 tgggattttagtttcaataatttgaatggttcattgcctgcttttccagaactgggtgctctatttctctcaaataatatgtttacagggtccttgtctt 5853012  T
Q  219 ctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatattt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5853013 ctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatcttt 5853112  T
Q  319 aacagttctaaatttggc 336  Q
    || |||||||||||||||    
T  5853113 aagagttctaaatttggc 5853130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 5882975 - 5883294
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    ||||||||||||  ||||||| ||||||| ||||||||||| |||||||||||||||||||| || ||||||   || |||||| || |||||  |   |    
T  5882975 tcttcgagtttggaatacttgaatgtttcacataacaaacttaatggacccttgccaaaatcatttccaagtaataaagtaaataataattatgattttg 5883074  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    ||||||||||||||||||| || ||||| |||| | ||||  | |||||| |   |   |||||||||||||||||||||||||||||| || || | ||    
T  5883075 tgtgggattttagtttcaataacttgaacggttcattgccgtcatttccaaaaccgcgagctctatttctctcaaataatatgtttacatggtccatatc 5883174  T
Q  217 ttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatat 316  Q
    |||||||||||||||||||||||| | |||| || || | |||||||||||||||||| ||| |||||  ||| ||||||||||||  |||||||||| |    
T  5883175 ttctttttgtacatcctcatctcatagtttagtttatctggacttgtctagtaatatgctagcggggcagctttcagattgttggggaaagtttcaatct 5883274  T
Q  317 ttaacagttctaaatttggc 336  Q
    |||  |||| | ||||||||    
T  5883275 ttagtagttttgaatttggc 5883294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 233
Target Start/End: Complemental strand, 5890228 - 5890018
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    |||||||||||   ||||||| ||||||| |||||| |||| |||||||| |||||||| || ||  ||||| |||| ||||| | |||  ||      |    
T  5890228 tcttcgagtttacaatacttgaatgtttcacataaccaacttaatggacctttgccaaagtcatttacaagtatgaaagtaaaatttgagaat------g 5890135  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |  | ||    
T  5890134 tgtgggattttagtttcaacaatttgaatggttcactgcctccttttccagagttgtacgctctatttctctcaagtaatatgtttacagagtctttatc 5890035  T
Q  217 ttctttttgtacatcct 233  Q
    |||||||||||||||||    
T  5890034 ttctttttgtacatcct 5890018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 116 - 239
Target Start/End: Original strand, 5820640 - 5820763
Alignment:
Q  116 gtgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgt 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| | || | |    
T  5820640 gtgtgggattttagtttcaacaatttgaatggttcactgcctccttttccaaagttttacgctctatttctctcaagtaatatgtttacagagtccttat 5820739  T
Q  216 cttctttttgtacatcctcatctc 239  Q
    ||||||||||||||||||| ||||    
T  5820740 cttctttttgtacatcctcgtctc 5820763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 32 - 271
Target Start/End: Original strand, 5827005 - 5827244
Alignment:
Q  32 tacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcgggtgtgggattttagtt 131  Q
    |||||| ||||||| ||||||||| | |||||||||||||||||||| || |||||  |||| |||||  |||    |  ||| ||||||||||| ||||    
T  5827005 tacttgaatgtttcacataacaaaattaatggacccttgccaaaatcttttccaagcatgaaagtaaaagatgcaacttatcgtgtgtgggatttcagtt 5827104  T
Q  132 tcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtcttctttttgtacatc 231  Q
    ||||||||||| |||||| | |||| ||||||||||| |||  | |||||||||||||||||||||||||||||||| || | ||||| ||||| | |||    
T  5827105 tcaacaatttggatggttcattgccaccttttccagaattgagctctctatttctctcaaataatatgtttacagggtccttatcttccttttgaaaatc 5827204  T
Q  232 ctcatctcaaaatttaattcatttagacttgtctagtaat 271  Q
    ||| || || ||||||||| || |||||||||||||||||    
T  5827205 ctcgtcacataatttaatttatctagacttgtctagtaat 5827244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 116 - 346
Target Start/End: Original strand, 5880355 - 5880585
Alignment:
Q  116 gtgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgt 215  Q
    ||||||||||| |||||||| ||||||||||||| | |||| ||||||||| | ||| |  ||||||||||||||||||||||| ||| |||| || | |    
T  5880355 gtgtgggatttcagtttcaataatttgaatggttcattgccaccttttccaaaattgcattctctatttctctcaaataatatgcttatagggtccttat 5880454  T
Q  216 cttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaata 315  Q
    ||||||| ||||| ||||  ||||| ||||||||| || ||||||||||||||||| |  ||| ||||  |||| ||||||||||||  ||||| ||  |    
T  5880455 cttctttctgtacttccttgtctcataatttaatttatctagacttgtctagtaattttctagcggggaaactttcagattgttggggaaagttccagga 5880554  T
Q  316 tttaacagttctaaatttggccgagaataat 346  Q
    ||||  |||||||||||||||  ||||||||    
T  5880555 tttagtagttctaaatttggcaaagaataat 5880585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 5829978 - 5830205
Alignment:
Q  119 tgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtctt 218  Q
    ||||||||||||||||| ||| ||||||||| | ||||| ||||||||||  ||   | | ||||||||||||| |||||||| |||||| | || ||||    
T  5829978 tgggattttagtttcaataatatgaatggttcattgcctgcttttccagaactgggtgttttatttctctcaaagaatatgttaacagggtctctatctt 5830077  T
Q  219 ctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatattt 318  Q
    ||||||| |||||||||||||||| |||||| || || ||| ||||||||||| |  ||| ||| | |||| | ||||||||||  |||||| ||| | |    
T  5830078 ctttttgcacatcctcatctcaaagtttaatacaattggacatgtctagtaattttctagagggacaactttctgattgttggggaaagtttaaatctct 5830177  T
Q  319 aacagttctaaatttggccgagaataat 346  Q
    |  |||||||||||||||||| ||||||    
T  5830178 agaagttctaaatttggccgaaaataat 5830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5763984 - 5764042
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5763984 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5764042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5767519 - 5767577
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5767519 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5767577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5771054 - 5771112
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5771054 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5771112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5774589 - 5774647
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5774589 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5774647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5778124 - 5778182
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5778124 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5778182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5781659 - 5781717
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5781659 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5781717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5785194 - 5785252
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5785194 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5788729 - 5788787
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5788729 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5788787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5792264 - 5792322
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5792264 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5792322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5795799 - 5795857
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5795799 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5795857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5799334 - 5799392
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5799334 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5799392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5802869 - 5802927
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5802869 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5802927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5806404 - 5806462
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5806404 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5806462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5809939 - 5809997
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5809939 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5809997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5813474 - 5813532
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5813474 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5813532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5817009 - 5817067
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5817009 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5817067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 5820544 - 5820602
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaa 75  Q
    ||||| ||||||| ||||||| |||||||  |||||||||| |||||||||||||||||    
T  5820544 tcttcaagtttgatatacttgaatgtttcatataacaaacttaatggacccttgccaaa 5820602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 5880247 - 5880329
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaa 99  Q
    ||||| ||||||  ||||||| ||||||| |||||||||||  |||||| ||||||||||| ||| |||||| |||| |||||    
T  5880247 tcttcaagtttgcaatacttgaatgtttcacataacaaacttcatggacacttgccaaaatactttccaagtttgaaagtaaa 5880329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 5885096 - 5885163
Alignment:
Q  188 tcaaataatatgtttacagggaccctgtcttctttttgtacatcctcatctcaaaatttaattcattt 255  Q
    |||||||||| |||||||||  |||| |||| ||||||||||||||| ||||| | ||||||| ||||    
T  5885096 tcaaataataagtttacaggatccctatcttttttttgtacatcctcgtctcatagtttaatttattt 5885163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 273; Significance: 1e-152; HSPs: 10)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 55191 - 55519
Alignment:
Q  18 cttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcgggt 117  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||| ||||    
T  55191 cttcgagtttgagatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttacaaagtctgaatgtaaattatgaagatatttgggt 55290  T
Q  118 gtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtct 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55291 gtgggattttagtttcaacaatttgaatggtttactgcctccatttccaaagttgtacgctctatttctctcaaataatatgtttacagggaccctgtct 55390  T
Q  218 tctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatatt 317  Q
    ||||||||| ||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55391 tctttttgttcatcctcatctcaacgtttaattaatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatctt 55490  T
Q  318 taacagttctaaatttggccgagaataat 346  Q
    ||| ||||||||||||||| |||||||||    
T  55491 taatagttctaaatttggcagagaataat 55519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 19584 - 19913
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||    
T  19584 tcttcgagtttgacatacttggatatttcccataataaactcaatggacccttgccaaaatccttacaaagtctgaatgtaaattatgatgatatttggg 19683  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19684 tgtgggattttagtttcaacaatttgaatggttcagtgcctccatttccaaagttgtacgctctatttctctcaaataatatgtttacagggtccctgtc 19783  T
Q  217 ttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatat 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  19784 ttcgttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtagggccacttccagattgttgggagaagtttcaatct 19883  T
Q  317 ttaacagttctaaatttggccgagaataat 346  Q
    |||| ||||||||||||||| |||||||||    
T  19884 ttaagagttctaaatttggcagagaataat 19913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 29932 - 30261
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||    
T  29932 tcttcgagtttgacatacttggatatttcccataataaactcaatggacccttgccaaaatccttacaaagtctgaatgtaaattatgatgatatttggg 30031  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30032 tgtgggattttagtttcaacaatttgaatggttcagtgcctccatttccaaagttgtacgctctatttctctcaaataatatgtttacagggtccctgtc 30131  T
Q  217 ttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatat 316  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  30132 ttcgttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtagggccacttccagattgttgggagaagtttcaatct 30231  T
Q  317 ttaacagttctaaatttggccgagaataat 346  Q
    |||| ||||||||||||||| |||||||||    
T  30232 ttaagagttctaaatttggcagagaataat 30261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 12550 - 12869
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  12550 tcttcgagtttgagatacttgaatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgatcattttcggg 12649  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  12650 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccaaagttggacgctctatttctctcaaataatatgtttacagggtccctgtc 12749  T
Q  217 ttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatat 316  Q
    |||||| ||||||||||||||||| | |||||   |||| ||||||||| ||||| || |||  |||  |||| ||||||||||| ||||||||||||      
T  12750 ttctttgtgtacatcctcatctcatagtttaaggtatttggacttgtcttgtaatttgctagaagggaaactttcagattgttggaagaagtttcaatca 12849  T
Q  317 ttaacagttctaaatttggc 336  Q
    |||  |||||||||||||||    
T  12850 ttagaagttctaaatttggc 12869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 39990 - 40305
Alignment:
Q  17 tcttcgagtttgacatacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcggg 116  Q
    ||||| ||||||||||||||| | || ||  |||||||||| ||||||||||||||||  || || |||||| ||||  |||| |||||| |  ||   |    
T  39990 tcttcaagtttgacatacttgaacgtatcgtataacaaacttaatggacccttgccaatgtcatttccaagtatgaaattaaaatatgatcacttttttg 40089  T
Q  117 tgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtc 216  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||    | || ||||||||||||||||||||| | |||  | | ||    
T  40090 tgtgggattttagtttcaacaatttgaatggttcattgcctccttttccagaattgagttccctgtttctctcaaataatatgttttctggg-tcatatc 40188  T
Q  217 ttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatat 316  Q
     || ||||||||||| ||| | || || |||||| |||| ||||||||||||||| |  ||| ||||  |||| |||||||||||  ||||||| || ||    
T  40189 gtccttttgtacatcttcaccacataacttaatttatttggacttgtctagtaattttctaggggggaaactttcagattgttggaggaagtttgaacat 40288  T
Q  317 ttaacagttctaaattt 333  Q
    |||  ||||||| ||||    
T  40289 ttagtagttctagattt 40305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 34050 - 34277
Alignment:
Q  119 tgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggaccctgtctt 218  Q
    ||||||||||||||||| ||| ||||||||| | ||||| ||||||||||  ||   | | ||||||||||||| |||||||| |||||| | || ||||    
T  34050 tgggattttagtttcaataatatgaatggttcattgcctgcttttccagaactgggtgttttatttctctcaaagaatatgttaacagggtcactatctt 34149  T
Q  219 ctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttcaatattt 318  Q
    ||||||| |||||||||||||||| |||||| || || ||| ||||||||||| |  ||| ||| | |||| ||||||||||||  |||||| ||| | |    
T  34150 ctttttgcacatcctcatctcaaagtttaatacaattggacatgtctagtaattttctagagggacaactttcagattgttggggaaagtttaaatctct 34249  T
Q  319 aacagttctaaatttggccgagaataat 346  Q
    |  |||||||||||||||||| ||||||    
T  34250 agaagttctaaatttggccgaaaataat 34277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 857 - 1030
Alignment:
Q  31 atacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcgggtgtgggattttagt 130  Q
    ||||||| ||||||| ||||||||||||||||| |||||||| ||||| || ||||||   || |||| ||||||||||  || ||||||||||||||||    
T  857 atacttgaatgtttcacataacaaactcaatggtcccttgccgaaatcatttccaagtacaaaagtaagttatgattatgatcaggtgtgggattttagt 956  T
Q  131 ttcaacaatttgaatggtttactgcctccttttccagagttgtacgctc-tatttctctcaaataatatgttta 203  Q
    ||||||||||| ||||| | | | |||||||||||| | |||    ||| ||||||||||||||||||||||||    
T  957 ttcaacaatttcaatggatcatttcctccttttccaaaattgcgttctcttatttctctcaaataatatgttta 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 15746 - 15919
Alignment:
Q  31 atacttggatgtttcccataacaaactcaatggacccttgccaaaatccttaccaagtctgaatgtaaattatgattatattcgggtgtgggattttagt 130  Q
    ||||||| ||||||| ||||||||||||||||| |||||||| ||||| || ||||||   || |||| ||||||||||  || ||||||||||||||||    
T  15746 atacttgaatgtttcacataacaaactcaatggtcccttgccgaaatcatttccaagtacaaaagtaagttatgattatgatcaggtgtgggattttagt 15845  T
Q  131 ttcaacaatttgaatggtttactgcctccttttccagagttgtacgctc-tatttctctcaaataatatgttta 203  Q
    ||||||||||| ||||| | | | |||||||||||| | |||    ||| ||||||||||||||||||||||||    
T  15846 ttcaacaatttcaatggatcatttcctccttttccaaaattgcgttctcttatttctctcaaataatatgttta 15919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 5562 - 5736
Alignment:
Q  31 atacttggatgtttcccataacaaactcaatggacccttgccaaaatcctta-ccaagtctgaatgtaaattatgattatattcgggtgtgggattttag 129  Q
    |||||||  |||||| ||||||||||||||||| |||||||| ||||| ||  ||||||   || |||| ||||||||||  || ||| |||||||||||    
T  5562 atacttgattgtttcacataacaaactcaatggtcccttgccgaaatcattttccaagtacaaaagtaagttatgattatgatcaggtttgggattttag 5661  T
Q  130 tttcaacaatttgaatggtttactgcctccttttccagagttgtacgctc-tatttctctcaaataatatgttta 203  Q
    |||||||||||||||| | | | | |||||||||||| | |||    ||| ||||||||| ||||||||||||||    
T  5662 tttcaacaatttgaattgatcatttcctccttttccaaaattgcgttctcttatttctctaaaataatatgttta 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 203
Target Start/End: Original strand, 22677 - 22851
Alignment:
Q  31 atacttggatgtttcccataacaaactcaatggacccttgccaaaatcctta-ccaagtctgaatgtaaattatgattatattcgggtgtgggattttag 129  Q
    |||||||  |||||| ||||||||||||||||| |||||||| ||||| ||  ||||||   || |||| ||||||||||  || ||| |||||||||||    
T  22677 atacttgattgtttcacataacaaactcaatggtcccttgccgaaatcattttccaagtacaaaagtaagttatgattatgatcaggtttgggattttag 22776  T
Q  130 tttcaacaatttgaatggtttactgcctccttttccagagttgtacgctc-tatttctctcaaataatatgttta 203  Q
    |||||||||||||||| | | | | |||||||||||| | |||    ||| ||||||||| ||||||||||||||    
T  22777 tttcaacaatttgaatagatcatttcctccttttccaaaattgcgttctcttatttctctaaaataatatgttta 22851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 116 - 336
Target Start/End: Complemental strand, 173154 - 172930
Alignment:
Q  116 gtgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatttctctcaaataatatgtttacagggacc---- 211  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||        
T  173154 gtgtgggatcttagtttcaacaaattgaatggtttgctgcctccttttccagagtagtatgccctatttctctcaaataatatgtttacagggtccttaa 173055  T
Q  212 ctgtcttctttttgtacatcctcatctcaaaatttaattcatttagacttgtctagtaatatgttagtggggccacttccagattgttgggagaagtttc 311  Q
     | | ||||||||||||||||||||||| ||| |||| | |||| || ||||||| |||  || ||||||    |||| |||||||||||||||| |||     
T  173054 ttatattctttttgtacatcctcatctctaaacttaacttatttggatttgtctaataacttgctagtggatgaactttcagattgttgggagaaattta 172955  T
Q  312 aatatttaacagttctaaatttggc 336  Q
    ||  ||||| |||||| ||||||||    
T  172954 aagttttaagagttctgaatttggc 172930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 239
Target Start/End: Complemental strand, 16550 - 16424
Alignment:
Q  116 gtgtgggattttagtttcaacaatttgaatggtttactgcctccttttccagagttgtacgctctatt---tctctcaaataatatgtttacagggaccc 212  Q
    |||| ||||||||||||||||||||| ||||||| | |||||||||||||| |  |||  ||  ||||   ||||||||||||||||||||||    ||     
T  16550 gtgttggattttagtttcaacaatttcaatggttcattgcctccttttccaaaactgtgtgcagtattatttctctcaaataatatgtttacaaactcct 16451  T
Q  213 tgtcttctttttgtacatcctcatctc 239  Q
    ||| |||||||||||||||||||||||    
T  16450 tgtattctttttgtacatcctcatctc 16424  T

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