View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15778_low_5 (Length: 325)

Name: NF15778_low_5
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15778_low_5
NF15778_low_5
[»] chr4 (2 HSPs)
chr4 (17-260)||(23240616-23240862)
chr4 (246-315)||(23240884-23240953)
[»] chr1 (3 HSPs)
chr1 (34-222)||(8643747-8643935)
chr1 (27-140)||(13706501-13706615)
chr1 (28-64)||(18239856-18239892)
[»] chr3 (2 HSPs)
chr3 (157-245)||(10479257-10479346)
chr3 (248-303)||(10479581-10479636)
[»] chr2 (3 HSPs)
chr2 (240-315)||(16617288-16617363)
chr2 (35-138)||(13567071-13567174)
chr2 (240-285)||(25849040-25849085)
[»] scaffold0184 (1 HSPs)
scaffold0184 (28-71)||(28274-28317)
[»] scaffold0078 (1 HSPs)
scaffold0078 (28-71)||(44527-44570)
[»] scaffold1813 (1 HSPs)
scaffold1813 (27-140)||(428-542)
[»] chr6 (1 HSPs)
chr6 (35-99)||(19273305-19273369)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 23240616 - 23240862
Alignment:
Q  17 tggaatgttgttgctgacattgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaat---actaattgtgatagtttcataaaa 113  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  23240616 tggaatgttattgctggcattgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaataatactaattgtgatagtttcataaaa 23240715  T
Q  114 agcattcaaggtgtttgataaaatgcccatatgaataatacattgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtata 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23240716 agcattcaaggtgtttgataaaatgcccatatgaataatacattgttttttgagattttcatagacaaatctcacgtgggatctttatgaattcagtata 23240815  T
Q  214 aaatcattcgaaaaaataaccaatggtataataaagttagaaaagca 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23240816 aaatcattcgaaaaaataaccaatggtataataaagttagaaaagca 23240862  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 23240884 - 23240953
Alignment:
Q  246 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23240884 aaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 23240953  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 222
Target Start/End: Original strand, 8643747 - 8643935
Alignment:
Q  34 cattgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgata 133  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||| || |||||| ||||||||||||  ||| || ||| |||||||||||||||||||    
T  8643747 cattgttgtttagagtaggtttagatacaatgtggttgttttgaagtttaattaacactaattgtgatcattttatgaaatgcattcaaggtgtttgata 8643846  T
Q  134 aaatgcccatatgaataatacattgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattc 222  Q
    ||||||| |  ||||  || ||||||||||||| ||| |||||||||||||| | |||||||| ||||||||||||||| |||| ||||    
T  8643847 aaatgcctaagtgaaacatccattgttttttgagattatcatagacaaatcttaagtgggatcattatgaattcagtatgaaataattc 8643935  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 13706501 - 13706615
Alignment:
Q  27 ttgctgacattgttgtttagagtatgtttagatacaatttggttg-ttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggt 125  Q
    |||||||||||||||||||||||| |||||| |||||| | ||||  |||||  || |||||| |||||||||  |||| |  ||||| ||| | |||||    
T  13706501 ttgctgacattgttgtttagagtaggtttaggtacaatgtagttgaatttgatgttgaattaacactaattgtactagtattttaaaatgcacttaaggt 13706600  T
Q  126 gtttgataaaatgcc 140  Q
    ||||| | |||||||    
T  13706601 gtttggtgaaatgcc 13706615  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 18239856 - 18239892
Alignment:
Q  28 tgctgacattgttgtttagagtatgtttagatacaat 64  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  18239856 tgctgacattgttgtttagagtaggtttaggtacaat 18239892  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 10479257 - 10479346
Alignment:
Q  157 tgttttttgatattttcatagacaaatctcacgtgggatctttatgaattcagtataaaatcattcg-aaaaaataaccaatggtataat 245  Q
    |||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||||    
T  10479257 tgttttttgagattctcatagacaaatctcatgtgggatctttctgaattcagtataaaatcatttgaaaaaaataatcaatggtataat 10479346  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 303
Target Start/End: Original strand, 10479581 - 10479636
Alignment:
Q  248 agttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatg 303  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||    
T  10479581 agttataaaagcactatatagtcaatttatttgagttactttcaatattttgaatg 10479636  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 16617288 - 16617363
Alignment:
Q  240 tataataaagttagaaaagcactatatagtcaatttagtttagttactttcaatatcttgaatggttgttcctatg 315  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |||||||||    
T  16617288 tataatcaagttagaaaagcactatatagtcaatttagtttagttacttttaatattttgaatgatggttcctatg 16617363  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 13567174 - 13567071
Alignment:
Q  35 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggtgtttgataa 134  Q
    |||||||| ||||||| |||||| |||||| ||||||||||||| || |||| | || |||||||| ||||| |||    ||| |||||||||||||| |    
T  13567174 attgttgtatagagtaggtttaggtacaatgtggttgttttgaagttgaatttacacaaattgtgacagttttatattttgcactcaaggtgtttgatga 13567075  T
Q  135 aatg 138  Q
    ||||    
T  13567074 aatg 13567071  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 25849040 - 25849085
Alignment:
Q  240 tataataaagttagaaaagcactatatagtcaatttagtttagtta 285  Q
    |||||| |||||| ||||||| ||||||| ||||||||||||||||    
T  25849040 tataatcaagttataaaagcaatatatagccaatttagtttagtta 25849085  T

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Target: scaffold0184 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 28317 - 28274
Alignment:
Q  28 tgctgacattgttgtttagagtatgtttagatacaatttggttg 71  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||    
T  28317 tgctgacattgttgtttagagtaggtttaggtacaatttagttg 28274  T

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Target: scaffold0078 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 44527 - 44570
Alignment:
Q  28 tgctgacattgttgtttagagtatgtttagatacaatttggttg 71  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||    
T  44527 tgctgacattgttgtttagagtaggtttaggtacaatttagttg 44570  T

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Target: scaffold1813 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 542 - 428
Alignment:
Q  27 ttgctgacattgttgtttagagtatgtttagatacaatttggttg-ttttgaacttcaattaatactaattgtgatagtttcataaaaagcattcaaggt 125  Q
    |||||| ||||||||||||||||| ||||||||||||| | ||||  |||||  || |||||| | |||||||| |||| |  ||||| ||| | |||||    
T  542 ttgctggcattgttgtttagagtaggtttagatacaatgtagttgaatttgatgttgaattaacagtaattgtgctagtattttaaaatgcacttaaggt 443  T
Q  126 gtttgataaaatgcc 140  Q
    |||| || |||||||    
T  442 gtttaatgaaatgcc 428  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 19273369 - 19273305
Alignment:
Q  35 attgttgtttagagtatgtttagatacaatttggttgttttgaacttcaattaatactaattgtg 99  Q
    |||||||||||||||| |||||| |||||| | ||||||| ||  ||||| ||| ||||||||||    
T  19273369 attgttgtttagagtaggtttaggtacaatgtagttgtttagatgttcaaataacactaattgtg 19273305  T

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