View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15778_low_8 (Length: 289)
Name: NF15778_low_8
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15778_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 26528993 - 26528736
Alignment:
| Q |
17 |
tcttcattattatgacaacatttggagacaaacatgcaacattggatccattattattcaatttaacattactatataacaccatttcattacctcctca |
116 |
Q |
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| T |
26528993 |
tcttcattattatgacaacatttggagacaaacatgcaacattggatccattattattcaatttaacattactatataacaccatttcattacctcctca |
26528894 |
T |
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| Q |
117 |
ttacatcaataaaataaaaatcccattaaatattaatcaatattatcaagatgatctatatctcggattaataataattgtaacaaaattcaattaggaa |
216 |
Q |
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| T |
26528893 |
ttacatcaataaaataaaaatcccattaaatattaatcaatattatcaagaggatctatatctcggattaataataattgtaacaaaattcaattaggaa |
26528794 |
T |
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| Q |
217 |
aagtgatttacagcattctcatggaacaacgagctacatacatgagtcatgtacatat |
274 |
Q |
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| T |
26528793 |
aagtgatttacagcattctcatggaacaacgagctacatacatgagtcatgtacatat |
26528736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 26532183 - 26532039
Alignment:
| Q |
17 |
tcttcattattatgacaacatttggagacaaacatgcaacattggatccattattattcaatttaacattactatataacaccatttcattacctcctca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
26532183 |
tcttcattattatgacaacatttggagacaaacatgcaacattggatcctttattattcaatttaacattactatttaataccatttcattacctcctca |
26532084 |
T |
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| Q |
117 |
ttacatc----aataaaataaaaatcccattaaatattaatcaata |
158 |
Q |
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| T |
26532083 |
ttacatcgataaataaaat-aaaagcccattaaatattaatcaata |
26532039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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