View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15778_low_9 (Length: 277)

Name: NF15778_low_9
Description: NF15778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15778_low_9
NF15778_low_9
[»] chr7 (14 HSPs)
chr7 (13-195)||(2137355-2137537)
chr7 (13-196)||(2124841-2125024)
chr7 (13-195)||(2064659-2064841)
chr7 (13-195)||(2103768-2103950)
chr7 (13-195)||(2055369-2055551)
chr7 (13-195)||(2121449-2121631)
chr7 (13-195)||(2134238-2134420)
chr7 (13-195)||(2097471-2097653)
chr7 (17-195)||(2071771-2071949)
chr7 (13-195)||(2246851-2247033)
chr7 (13-195)||(2693038-2693220)
chr7 (13-195)||(1697978-1698160)
chr7 (94-126)||(2054340-2054372)
chr7 (87-126)||(2119625-2119664)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2137355 - 2137537
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||||    
T  2137355 acctgtgagattgttaaaggacacatttaagaacgccaaaaaggtgatttctgccaactgttggggaatttttcctgaaagactgttgcgagaaagatct 2137454  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    ||||||||||||||   |||||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  2137455 agtgcttcaaggttcgaaagcttccctaaggaagatggaatgctgccaataaggtggttatttgacaagttgagcaaaacaag 2137537  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 2124841 - 2125024
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  2124841 acctgtgagattgttaaaggacacatttaagtactccaaaaaggtgatttctgccaactgttggggaatttttcctgaaagactgttgagagaaagatct 2124940  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaagt 196  Q
    |||||||||||||||  ||| |||| ||||||||  || ||||||||||||||| ||||||||||||||||||| |||||||||    
T  2124941 agtgcttcaaggtttgaaagattccctaaggaagatggtatgctgccaataaggtggttatttgacaagttgagtaaaacaagt 2125024  T

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Target: chr7; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2064659 - 2064841
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| ||||| ||  ||||||||||||||||||||||||||    
T  2064659 acctgtgagattgttaaatgacacatttaagaactccaaaaaggtgatttcagccaactgttgaggaattttccctgaaagactgttgagagaaagatct 2064758  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||||||||||||||  |||||||| ||||||||  ||||||||||||||||| |  |||||||||||||| |||||||||||    
T  2064759 agtgcttcaaggtttgaaagcttccctaaggaagatggaatgctgccaataagcatattatttgacaagtttagcaaaacaag 2064841  T

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Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2103768 - 2103950
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||  ||||||||||||||||||||||||||    
T  2103768 acctgtgagattgttaaaggacacatttaagtactccaaaaaggtgatttctgccaactgttcgggaattttccctgaaagactgttgagagaaagatct 2103867  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||||||||||||||  |||||||| ||||||||  |||||||||||||||||   |||||| ||||||||||||||||||||    
T  2103868 agtgcttcaaggtttgaaagcttccctaaggaagatggaatgctgccaataagattgttattcgacaagttgagcaaaacaag 2103950  T

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Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2055369 - 2055551
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||  ||  |||||||||||||||| |||||||||    
T  2055369 acctctgagattgttaaaggacacatttaagaactccaaaatggtgatttctgtcaactgttagggaactttccctgaaagactgttgagggaaagatct 2055468  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||||||||||||||| |||||||| |||||| |  || ||||| ||| ||||||||||||||||||||||||||||||||||    
T  2055469 agtgcttcaaggtttataagcttccctaaggatgatggtatgctaccagtaaggaggttatttgacaagttgagcaaaacaag 2055551  T

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Target: chr7; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2121449 - 2121631
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||||| ||||||||||| |||||||||||| | |||||||||||||||| || ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  2121449 acctgtaagattgttaaatgacacatttaagtattccaaaaaggtgatttgtgccaactgttggggaattttccctgaaagactgttgagagaaagatct 2121548  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||||||||||||||  |||||||| ||||||||  ||||||||||||||||| |  |||||||||||||| |||||||||||    
T  2121549 agtgcttcaaggtttgaaagcttccctaaggaagatggaatgctgccaataagcatattatttgacaagtttagcaaaacaag 2121631  T

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Target: chr7; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2134238 - 2134420
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||||||||||||||||| |||| ||||||||||| ||||||||| |||| || ||||||||||||||| ||  ||||||||||||||| ||||||||||    
T  2134238 acctgtgagattgttaaaggacaaatttaagaactgcaaaaaggtaatttgtgccaactgttggggaattttccctgaaagactgttgacagaaagatct 2134337  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||||||||||||||  |||||||| ||||||||   ||||||||||||||||||||||||| || |||||||||||||||||    
T  2134338 agtgcttcaaggtttgaaagcttccctaaggaagattgaatgctgccaataaggaggttattagagaagttgagcaaaacaag 2134420  T

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Target: chr7; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 2097471 - 2097653
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||| ||  ||||||||||||||||||||||||||    
T  2097471 acctgtgagattgttaaaggacacatttaagtactccaaaaaggtgatttctgccaactgtttgggaatttttcctgaaagactgttgagagaaagatct 2097570  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    ||||||||||| |||  |||||||| ||||||||  || ||||| |||||||| |  ||||| ||||||||||||||||||||    
T  2097571 agtgcttcaagttttgaaagcttccctaaggaagatggtatgcttccaataagcatattattcgacaagttgagcaaaacaag 2097653  T

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Target: chr7; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 2071771 - 2071949
Alignment:
Q  17 gtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatctagtg 116  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||| ||  ||||||||||||||| |||||||||||  |    
T  2071771 gtgagattgttaaaggacacatttaagaattccaaaaaggtgatttgtgccaactgttggggaattttccctgaaagactgttgacagaaagatctaacg 2071870  T
Q  117 cttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    ||||||||||   |||||||| ||||||||  || ||||| ||||||||| ||||||||||||||||||||||||||||    
T  2071871 cttcaaggttagaaagcttccctaaggaagatggtatgcttccaataaggtggttatttgacaagttgagcaaaacaag 2071949  T

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Target: chr7; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 2247033 - 2246851
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||||||||| || ||  ||||||||||||||||||||||||||    
T  2247033 acctgtgagattgttaaaagacacatttaagtattccaaaaaggtgatttgtgccaactgttggggtattttccctgaaagactgttgagagaaagatct 2246934  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||||||||||||||  |||||||   |  ||||  |||||||||||||||||   |||||| ||||||||||||||||||||    
T  2246933 agtgcttcaaggtttgaaagcttcgcaattgaagatggaatgctgccaataagattgttattcgacaagttgagcaaaacaag 2246851  T

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Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 2693220 - 2693038
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    |||| |||| || ||||| |||||||||||| ||||||||||||||||||| | ||||||||| ||||| ||  | || ||||||||| |||||||||||    
T  2693220 acctctgagtttattaaaggacacatttaagtactccaaaaaggtgatttcagccaactgttgtggaattttcccagagagactgttgtgagaaagatct 2693121  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||| ||||||||||  |||||||| ||  ||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  2693120 agtgtttcaaggtttgaaagcttccctactgaagatggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 2693038  T

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Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 1698160 - 1697978
Alignment:
Q  13 acctgtgagattgttaaaagacacatttaagaactccaaaaaggtgatttctgtcaactgttggggaatcttgtctgaaagactgttgagagaaagatct 112  Q
    ||||| ||||||||| || |||||||| | ||||||||||||||| |  | ||| |||||||| ||||||||  | || ||| |||||| |||||||||     
T  1698160 acctgagagattgttgaaggacacattaaggaactccaaaaaggtaaggtgtgttaactgttgaggaatcttccccgacagattgttgaaagaaagatcc 1698061  T
Q  113 agtgcttcaaggtttagaagcttccttaaggaagtaggaatgctgccaataaggaggttatttgacaagttgagcaaaacaag 195  Q
    |||||||||||||||  |||||||| ||||||||  || ||| ||||| |||||| |||||||||||||||||||||||||||    
T  1698060 agtgcttcaaggtttgaaagcttccctaaggaagatggtatgttgccagtaaggatgttatttgacaagttgagcaaaacaag 1697978  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 2054340 - 2054372
Alignment:
Q  94 actgttgagagaaagatctagtgcttcaaggtt 126  Q
    |||||||||||||||||||||||||||||||||    
T  2054340 actgttgagagaaagatctagtgcttcaaggtt 2054372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 2119625 - 2119664
Alignment:
Q  87 ctgaaagactgttgagagaaagatctagtgcttcaaggtt 126  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  2119625 ctgaacgaatgttgagagaaagatctagtgcttcaaggtt 2119664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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