View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15779_high_1 (Length: 356)
Name: NF15779_high_1
Description: NF15779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15779_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 342
Target Start/End: Complemental strand, 29729457 - 29729119
Alignment:
| Q |
5 |
ttccagttataaattccaaagtttaaggtacaaaaatgaaattgatttgctaaatagacatattaattagtaattcaaaaactaaattcatagannnnnn |
104 |
Q |
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| T |
29729457 |
ttccagttacaaattccgaagtttaagctacaaaaatgaaattgatttgctaaatagacatattaattagtaattcaaaaactaaattcacagatttttt |
29729358 |
T |
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| Q |
105 |
nnncatgattaaccatgaacaacaaagaaatatg---aagattaacaatttcaaactacagggaactttttatgaaagtagagactcaatgttgttgttc |
201 |
Q |
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| T |
29729357 |
t--catgattaatcatgaacaacaaagaaatatgttgaagattaacaatttcaaactacagggaactttttatgaaagtagagactcaatgttgttgttc |
29729260 |
T |
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| Q |
202 |
ttcttactagcattttctcttaatagtagtataagtaggcatatttgtgtggaataaaagtgtttgcacgaagaacctgt-aatttttaatatctctata |
300 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29729259 |
ttcttactagcattttctctt-atcgtagtataagtaggcatatttgtgtggaataaaagtgtttgcacgaagaacctgtaaatttttaatatctctata |
29729161 |
T |
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| Q |
301 |
agataaaggataacttgattgttagaacatcaagaacattgt |
342 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29729160 |
agataaaggataacttgattgatagaacatcaagaacattgt |
29729119 |
T |
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