View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1578-Insertion-10 (Length: 1038)
Name: NF1578-Insertion-10
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1578-Insertion-10 |
 | |
|
| [»] scaffold0003 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 391 - 1034
Target Start/End: Complemental strand, 42312769 - 42312128
Alignment:
| Q |
391 |
gttaaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaatta |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312769 |
gttaaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaatta |
42312670 |
T |
|
| Q |
491 |
actcatgtagttttgcatttaaaaagagaaatggaactctgaagcaggaatta-cctacaaattggtgtttgcgtatatttttagttcatttgtaagtgt |
589 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312669 |
actcatgtagttttgcatttaaaa-gagaaatggaactatgaagcagaaattagcctacacattggtgtttgcgtatatttttagttcatttgtaagtgt |
42312571 |
T |
|
| Q |
590 |
tatcttactattttttccttttctctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctgaagtagtattt |
689 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42312570 |
tatcttactattgcttccttttctctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctaaagtagtattt |
42312471 |
T |
|
| Q |
690 |
ttatttttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacagagcaccacaaagcattatcaatgacactcttgctggacaaact |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312470 |
ttatttttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacagagcaccacaaagcattatcaatgacactcttgctggacaaact |
42312371 |
T |
|
| Q |
790 |
gggggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtggactttctatgatgtggatgaaatactatgagtgaaattatacatgtttgt |
889 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
42312370 |
gggggtgttcattcattgaagcaggaaaagaacaaaaatataaaaggt-gactttctctgatgtagatgaaatactatgagcgaaattatacatgtttgt |
42312272 |
T |
|
| Q |
890 |
tattgtgtttcactgttgctattgcaagtaatacaattggatcatctcatttgatacatcaattggaccgcacatcatattatcacttttaaagtttatc |
989 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312271 |
tattgtgtttcactgttgctattgcaagtaatacaagtggatcatctcatttgatacatcaatt-gaccgcacatcatattatcacttttaaagtttatc |
42312173 |
T |
|
| Q |
990 |
gacattgttttatatatttgtttttcagccctgcattttatgctc |
1034 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312172 |
gacattgttttatatatttgtttttcagccctgcattttatgctc |
42312128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 42313152 - 42312838
Alignment:
| Q |
7 |
aagatgatgtatttttatgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtttttgttcta |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42313152 |
aagatgatgtatttttgtgtctatttgttcatgatgtttagctctgtatttcactttctttttttccttacttatggtggttgttttggtttttgttcta |
42313053 |
T |
|
| Q |
107 |
atcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatatagtttggtg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
42313052 |
atcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctacgagtacattgaattcacttgctttttgtatcttcttatagtttggtg |
42312953 |
T |
|
| Q |
207 |
ttttatgttagnnnnnnnnttaaaccactgccatatgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacg |
306 |
Q |
| |
|
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42312952 |
ttctatgttag-aaaaaaattaaaccactgccatacgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacg |
42312854 |
T |
|
| Q |
307 |
tcttacttgatgccac |
322 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42312853 |
tcttacttgatgccac |
42312838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 74 - 316
Target Start/End: Original strand, 43227081 - 43227332
Alignment:
| Q |
74 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtt------tcagcttga------atagaaagaggctatga |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| | ||||||| ||||||||| ||||||| |
|
|
| T |
43227081 |
ttacttatggtggttgttttggtttttgttcttatcatggcaaataatttgaatttggtgttacaaagtgagcttgagaatatatagaaagatgctatga |
43227180 |
T |
|
| Q |
162 |
gaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgttagnnnnnnnnttaaaccactgccatatgatgaagcaagagtattag |
261 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||| ||||||||||| ||||||| | |||| ||| ||||| |||||||||||||| |||| |
|
|
| T |
43227181 |
gaacattgaattcacttgatttttgaatc-tcattgagtttggtgttctatgtta--aaaaaattaaaactactaccataggatgaagcaagagttttag |
43227277 |
T |
|
| Q |
262 |
aatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttga |
316 |
Q |
| |
|
||||||||||| || ||||||||||| ||||| || | |||||| | |||||||| |
|
|
| T |
43227278 |
aatcaagtgttctttgacaggaagatatctctatagttgaagacatgttacttga |
43227332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 695 - 818
Target Start/End: Complemental strand, 15580810 - 15580687
Alignment:
| Q |
695 |
tttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacagagcaccacaaagcattatcaatgacactcttgctggacaaactggggg |
794 |
Q |
| |
|
|||||||||||||||| || ||||| |||||| |||| | ||||||||| | ||||||||| |||||| ||||||||||||||| || |||||||| |
|
|
| T |
15580810 |
tttggaagactttaaacgacatccacccaagcctgagcggttcatcaaatggtgcaccacaatgcattagtaatgacactcttgctagattaactggggt |
15580711 |
T |
|
| Q |
795 |
tgttcattcattgaagcaggaaaa |
818 |
Q |
| |
|
||||| |||||| ||||||||||| |
|
|
| T |
15580710 |
tgttctttcattaaagcaggaaaa |
15580687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 894 - 951
Target Start/End: Original strand, 8333926 - 8333983
Alignment:
| Q |
894 |
gtgtttcactgttgctattgcaagtaatacaattggatcatctcatttgatacatcaa |
951 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
8333926 |
gtgtctcactgttgctattgcaagtaatacggctggatcatctcattcgatacatcaa |
8333983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 903 - 951
Target Start/End: Original strand, 12049540 - 12049588
Alignment:
| Q |
903 |
tgttgctattgcaagtaatacaattggatcatctcatttgatacatcaa |
951 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
12049540 |
tgttgctatggcaagtaacacagctggatcatctcatttgatacatcaa |
12049588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 394 - 882
Target Start/End: Complemental strand, 41326547 - 41326063
Alignment:
| Q |
394 |
aaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41326547 |
aaatctgcatctttatttgatgattccaaaacatca---ttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
41326451 |
T |
|
| Q |
494 |
catgtagttttgcatttaaaaagagaaatggaactctgaagcaggaattacc-tacaaattggtgtttgcgtatatttttagttcatttgtaagtgttat |
592 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||| || || | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41326450 |
catgtagttttgcatttaaaa-gagaaatggaactctgaagtaggaatttccctatacattggtgtttgcgtatatttttagttcatttgtaagtgttat |
41326352 |
T |
|
| Q |
593 |
cttactattttttccttttctctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctgaagtagtattttta |
692 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41326351 |
cttactattgcttccttttctctccaatcagattttgttccagcagaaaatgaagaatcatattagttctattaataagctttctgaagtagtattttta |
41326252 |
T |
|
| Q |
693 |
tttttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacagagcaccacaaagcattatcaatgacactcttgctggacaaactggg |
792 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41326251 |
tttttggaagaatttaaatgaaatccatccaagcttgagtgattcatcaaagagagcaccacaaagcattatcaatgacactcttgctagacaaactggg |
41326152 |
T |
|
| Q |
793 |
ggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtggactttctatgatgtggatgaaatactatgagtgaaattataca |
882 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
41326151 |
ggtgttcattcattgaagcgggaaaacaacaaaaaaataaaaggt-gactttctatgatgtagatgaaaaactatgagcgaaattataca |
41326063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 619 - 1034
Target Start/End: Original strand, 47246871 - 47247285
Alignment:
| Q |
619 |
atcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctgaagtagtatttttatttttggaagactttaaatgaaatcc |
718 |
Q |
| |
|
|||| ||||||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47246871 |
atcaaattttgttccaacagaaaatgaagagtcatattaattctattaatgagctttctgaagtagtatttttatttttggaaggctttaaatgaaatcc |
47246970 |
T |
|
| Q |
719 |
atccaagcttgagtgattcatcaaacagagcaccacaaagcattatcaatgacactcttgctggacaaa-ctgggggtgttcattcattgaagcaggaaa |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
47246971 |
atccaagcttgagtgattcatcaaacagagcattacaaagcattatcaatgacactcttgctagacaaatcggggggtgttcattcattgaagcaggaaa |
47247070 |
T |
|
| Q |
818 |
acaacaaaaatataaaaggtggactttctatgatgtggatgaaatactatgagtgaaattatacatgtttgttattgtgtttcactgttgctattgcaag |
917 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47247071 |
acaacaaaaatataaaaggt-gactttctatgatgtagatgaaatactataagcgaaattatacatgtttgttattgtgtttcactgttgctattgcaag |
47247169 |
T |
|
| Q |
918 |
taatacaattggatcatctcatttgatacatcaattggaccgcacatcatattatcacttttaaagtttatcgacattgttttatatatttgtttttcag |
1017 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47247170 |
taatacaagtggatcatctcatttgatacattaatt-gaccgcacatcatattatcacttttaaagtttatcgacattgttttatatatttgtctttcaa |
47247268 |
T |
|
| Q |
1018 |
ccctgcattttatgctc |
1034 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47247269 |
ccctgcattttatgctc |
47247285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 41326927 - 41326618
Alignment:
| Q |
8 |
agatgatgtatttttatgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtttttgttctaa |
107 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||||| ||||||| ||||||| ||||||||||||| |||||||||||||| |||||| |
|
|
| T |
41326927 |
agatgatgtatttttgtgtctatttcttcatcatgtttaactctgtatttcacttt---ttttcccttacttatggtcgttgttttggtttt-gttctat |
41326832 |
T |
|
| Q |
108 |
tcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatatagtttggtgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
41326831 |
tcatggcaaataattagaatttagtgtttcagcttgaatagaaagaggctataagaacattgaattcacttgctttttgaatcttcttatagtttggtgt |
41326732 |
T |
|
| Q |
208 |
tttatgttagnnnnnnnnttaaaccactgccatatgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgt |
307 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41326731 |
tctatgttag-aaaaaaattaaaccactgccatatgatgaagcaagagttttagaatcaagttttgttcgacaggaagatctctctgtaatcgaagacgt |
41326633 |
T |
|
| Q |
308 |
cttacttgatgccac |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41326632 |
cttacttgatgccac |
41326618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 992 - 1034
Target Start/End: Complemental strand, 41326051 - 41326009
Alignment:
| Q |
992 |
cattgttttatatatttgtttttcagccctgcattttatgctc |
1034 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
41326051 |
cattgttttatatatttgtctttcagacctacattttatgctc |
41326009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 394 - 848
Target Start/End: Complemental strand, 20909652 - 20909199
Alignment:
| Q |
394 |
aaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909652 |
aaatctgcatctttatttgatgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
20909553 |
T |
|
| Q |
494 |
catgtagttttgcatttaaaaagagaaatggaactctgaagcaggaatta-cctacaaattggtgtttgcgtatatttttagttcatttgtaagtgttat |
592 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20909552 |
catgtagttttgcatttaaaa-gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttat |
20909454 |
T |
|
| Q |
593 |
cttactattttttccttttctctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctgaagtagtattttta |
692 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909453 |
cttgctattgcttccttttctctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtattttta |
20909354 |
T |
|
| Q |
693 |
tttttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacagagcaccacaaagcattatcaatgacactcttgctggacaaactggg |
792 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20909353 |
tatttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacatagcaccataaagcattatcaatgacactcttgctagacaaactggg |
20909254 |
T |
|
| Q |
793 |
ggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtggactttctat |
848 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20909253 |
ggtgttcattcattgaagcgggaaaacaacaaaaatataaaaggt-gactttctat |
20909199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 394 - 848
Target Start/End: Complemental strand, 20924100 - 20923647
Alignment:
| Q |
394 |
aaatctgcatctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20924100 |
aaatctgcatctttatttgatgattccaaaacatcatatttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaact |
20924001 |
T |
|
| Q |
494 |
catgtagttttgcatttaaaaagagaaatggaactctgaagcaggaatta-cctacaaattggtgtttgcgtatatttttagttcatttgtaagtgttat |
592 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20924000 |
catgtagttttgcatttaaaa-gagaaatggaactctgaagcaggaattagcctacacattggtgtttgcatatatttttagttcatttgtaagtgttat |
20923902 |
T |
|
| Q |
593 |
cttactattttttccttttctctccaatcagattttgttctagcagaaaatgaagaatcatattagttctattaatgagctttctgaagtagtattttta |
692 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20923901 |
cttgctattgcttccttttctctccaatcagattttgttccagcagaaaatgaagaatcatatttgttctattaatgagctttctgaagtagtattttta |
20923802 |
T |
|
| Q |
693 |
tttttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacagagcaccacaaagcattatcaatgacactcttgctggacaaactggg |
792 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20923801 |
tatttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacatagcaccataaagcattatcaatgacactcttgctagacaaactggg |
20923702 |
T |
|
| Q |
793 |
ggtgttcattcattgaagcaggaaaacaacaaaaatataaaaggtggactttctat |
848 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20923701 |
ggtgttcattcattgaagcgggaaaacaacaaaaatataaaaggt-gactttctat |
20923647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 20910024 - 20909724
Alignment:
| Q |
18 |
tttttatgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtttttgttctaatcatggcaaa |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20910024 |
tttttgtgtctatttgttcatgatgtttaactctgtatttcacttt--tttttcccttacttatggtggttgttttggtttttgttctaatcatggcaaa |
20909927 |
T |
|
| Q |
118 |
taattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgttag |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
20909926 |
taattagtatttagtgtttcagcttgaatagaaagaggctacgagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttag |
20909827 |
T |
|
| Q |
218 |
nnnnnnnnttaaaccactgccatatgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20909826 |
--aaaaaattaaaccactgccatatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgat |
20909729 |
T |
|
| Q |
318 |
gccac |
322 |
Q |
| |
|
||||| |
|
|
| T |
20909728 |
gccac |
20909724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 20924472 - 20924172
Alignment:
| Q |
18 |
tttttatgtctatttgttcatgatgtttagctctgtaaatcactttannnnnnnccttacttatggtggttgttttggtttttgttctaatcatggcaaa |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20924472 |
tttttgtgtctatttgttcatgatgtttaactctgtatttcacttt--tttttcccttacttatggtggttgttttggtttttgttctaatcatggcaaa |
20924375 |
T |
|
| Q |
118 |
taattagaatttagtgtttcagcttgaatagaaagaggctatgagaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgttag |
217 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||||| || ||||| |
|
|
| T |
20924374 |
taattagtatttagtgtttcagcttgaatagaaagaggctacgagaacattgaattcacttgctttttgaatcttcttatagtttggtgttctaagttag |
20924275 |
T |
|
| Q |
218 |
nnnnnnnnttaaaccactgccatatgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20924274 |
--aaaaaattaaaccactgccatatgatgaagcaagagttttagaatcaagtgttgttcgacaggaagatctctctgtaatagaagacgtcttacttgat |
20924177 |
T |
|
| Q |
318 |
gccac |
322 |
Q |
| |
|
||||| |
|
|
| T |
20924176 |
gccac |
20924172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 391 - 825
Target Start/End: Original strand, 27445339 - 27445777
Alignment:
| Q |
391 |
gttaaatctgca-tctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaatt |
489 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
27445339 |
gttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaact |
27445438 |
T |
|
| Q |
490 |
aactcatgtagttttgcatttaaaaagagaaatggaactctgaagcaggaatta-cctacaaattggtgtttgcgtatatttttagttcatttgtaagtg |
588 |
Q |
| |
|
| ||||||||||| ||||||||||||| | | || | |||||||||| ||||| || ||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27445439 |
agctcatgtagttctgcatttaaaaagtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtg |
27445538 |
T |
|
| Q |
589 |
ttatcttactattttttccttttctctccaatcagattttgttctagcagaaaatgaaga-atcatattagttctattaatgagctttctgaagtagtat |
687 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| || | |||||||| |||| | || | |||||||||||||| |||| |||||| ||| |
|
|
| T |
27445539 |
ttatcttactattgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatat |
27445638 |
T |
|
| Q |
688 |
ttttatttttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacaga-gcaccacaaagcattatcaatgacactcttgctggacaa |
786 |
Q |
| |
|
||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| || | || ||||||||| || || || ||||| | | | |
|
|
| T |
27445639 |
tttgatttttggaagacttaaaatgacatccatccaagcttgagtgattcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatatta |
27445738 |
T |
|
| Q |
787 |
actgggggtgttcattcattgaagcaggaaaacaacaaa |
825 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
27445739 |
actgatggtgttcattccttgaagcaggaaaacaacaaa |
27445777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 908 - 1034
Target Start/End: Complemental strand, 20909202 - 20909077
Alignment:
| Q |
908 |
ctattgcaagtaatacaattggatcatctcatttgatacatcaattggaccgcacatcatattatcacttttaaagtttatcgacattgttttatatatt |
1007 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20909202 |
ctattgcaagtaatacaagtggatcatctcatttgatacatcaattg-accgcacatcatattatcacttttaaagtttatcgacattgttttatatatt |
20909104 |
T |
|
| Q |
1008 |
tgtttttcagccctgcattttatgctc |
1034 |
Q |
| |
|
||| ||||| |||| ||||||||||| |
|
|
| T |
20909103 |
tgtctttcaaccctaaattttatgctc |
20909077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 908 - 1034
Target Start/End: Complemental strand, 20923650 - 20923525
Alignment:
| Q |
908 |
ctattgcaagtaatacaattggatcatctcatttgatacatcaattggaccgcacatcatattatcacttttaaagtttatcgacattgttttatatatt |
1007 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20923650 |
ctattgcaagtaatacaagtggatcatctcatttgatacatcaattg-accgcacatcatattatcacttttaaagtttatcgacattgttttatatatt |
20923552 |
T |
|
| Q |
1008 |
tgtttttcagccctgcattttatgctc |
1034 |
Q |
| |
|
||| ||||| |||| ||||||||||| |
|
|
| T |
20923551 |
tgtctttcaaccctaaattttatgctc |
20923525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 74 - 287
Target Start/End: Original strand, 27445012 - 27445236
Alignment:
| Q |
74 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttca------gcttgaa------tagaaagaggctatga |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| ||| || ||||||||| || ||||||| || ||||| ||||||| |
|
|
| T |
27445012 |
ttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatga |
27445111 |
T |
|
| Q |
162 |
gaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgttagnnnnnnnnttaaaccactgccatatgatgaagcaagagtattag |
261 |
Q |
| |
|
||||||||| |||||||| |||||| |||||| || ||||||||||| ||||||| | |||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
27445112 |
gaacattgagttcacttgctttttgaatcttcttagagtttggtgttctatgtta-aaaaaaattaaaaccactaccataggatgaagcaatagttttag |
27445210 |
T |
|
| Q |
262 |
aatcaagtgttgttcgacaggaagat |
287 |
Q |
| |
|
|||||| ||||| | ||||||||||| |
|
|
| T |
27445211 |
aatcaaatgttgattgacaggaagat |
27445236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 22081871 - 22081965
Alignment:
| Q |
228 |
aaaccactgccatatgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccac |
322 |
Q |
| |
|
|||||||| |||| ||||||| | |||| ||||||||||| |||||| |||| |||| | ||| |||| || ||| || ||||||||||||||| |
|
|
| T |
22081871 |
aaaccacttacataggatgaagtaggagttttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccac |
22081965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 175; Significance: 1e-93; HSPs: 4)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 391 - 825
Target Start/End: Complemental strand, 42019 - 41581
Alignment:
| Q |
391 |
gttaaatctgca-tctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaatt |
489 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
42019 |
gttaaatctgcaatttttgtttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaact |
41920 |
T |
|
| Q |
490 |
aactcatgtagttttgcatttaaaaagagaaatggaactctgaagcaggaatta-cctacaaattggtgtttgcgtatatttttagttcatttgtaagtg |
588 |
Q |
| |
|
| ||||||||||| ||||||||||||| | | || | |||||||||| ||||| || ||| | |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41919 |
agctcatgtagttctgcatttaaaaagtaatagggcattctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtg |
41820 |
T |
|
| Q |
589 |
ttatcttactattttttccttttctctccaatcagattttgttctagcagaaaatgaaga-atcatattagttctattaatgagctttctgaagtagtat |
687 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| || | |||||||| |||| | || | |||||||||||||| |||| |||||| ||| |
|
|
| T |
41819 |
ttatcttactattgcttccttttctctccaaacagattttgctccaacagaaaataaagatgttatgtcagttctattaatgatttttccgaagtaatat |
41720 |
T |
|
| Q |
688 |
ttttatttttggaagactttaaatgaaatccatccaagcttgagtgattcatcaaacaga-gcaccacaaagcattatcaatgacactcttgctggacaa |
786 |
Q |
| |
|
||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| || | || ||||||||| || || || ||||| | | | |
|
|
| T |
41719 |
tttgatttttggaagacttaaaatgacatccatccaagcttgagtgattcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatatta |
41620 |
T |
|
| Q |
787 |
actgggggtgttcattcattgaagcaggaaaacaacaaa |
825 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
41619 |
actgatggtgttcattccttgaagcaggaaaacaacaaa |
41581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 409 - 825
Target Start/End: Complemental strand, 35330 - 34911
Alignment:
| Q |
409 |
tttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaattaactcatgtagttttgcat |
508 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
35330 |
tttgaggattccaaaatatcatgtttgctcctatgcacaataagaattctgctaattgaatttgctagataattatcaactaactcatgtatttctgcat |
35231 |
T |
|
| Q |
509 |
ttaaaaagagaaatggaactctgaagcaggaatta-cctacaaattggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttcc |
607 |
Q |
| |
|
|||||||| | | || |||||||||||| ||||| || ||| | |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35230 |
ttaaaaagtaatagggcactctgaagcagcaattagccaacatactggtgtttgcatatatttttagttcatttgtaagtgttatcttactattgcttcc |
35131 |
T |
|
| Q |
608 |
ttttctctccaatcagattttgttctagcagaaaatgaaga-atcatattagttctattaatgagctttctgaagtagtatttttatttttggaagactt |
706 |
Q |
| |
|
||||||||||| ||||||||| || | |||||||| |||| || | |||||||||||||| |||| |||||| |||||| ||||||||||||||| |
|
|
| T |
35130 |
ttttctctccatacagattttgctccaacagaaaataaagatggtatgtcagttctattaatgatttttccgaagtaatattttgatttttggaagactt |
35031 |
T |
|
| Q |
707 |
taaatgaaatccatccaagcttgagtgattcatcaaacaga-gcaccacaaagcattatcaatgacactcttgctggacaaactgggggtgttcattcat |
805 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| || | || ||||||||| || || || ||||| | | |||||||||||||||||| | |
|
|
| T |
35030 |
aaaatgacatccatccaagcttgagtgtttcatcaaatggatgaacaacaaagcatcatgaacaactttcttgatatattaactgggggtgttcattcct |
34931 |
T |
|
| Q |
806 |
tgaagcaggaaaacaacaaa |
825 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
34930 |
tgaagcatgaaaacaacaaa |
34911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 74 - 287
Target Start/End: Complemental strand, 42346 - 42122
Alignment:
| Q |
74 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttca------gcttgaa------tagaaagaggctatga |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| ||| || ||||||||| || ||||||| || ||||| ||||||| |
|
|
| T |
42346 |
ttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatga |
42247 |
T |
|
| Q |
162 |
gaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgttagnnnnnnnnttaaaccactgccatatgatgaagcaagagtattag |
261 |
Q |
| |
|
||||||||| |||||||| |||||| |||||| || ||||||||||| ||||||| | |||||||| ||||| |||||||||| ||| |||| |
|
|
| T |
42246 |
gaacattgagttcacttgctttttgaatcttcttagagtttggtgttctatgtta-aaaaaaattaaaaccactaccataggatgaagcaatagttttag |
42148 |
T |
|
| Q |
262 |
aatcaagtgttgttcgacaggaagat |
287 |
Q |
| |
|
|||||| ||||| | ||||||||||| |
|
|
| T |
42147 |
aatcaaatgttgattgacaggaagat |
42122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 74 - 287
Target Start/End: Complemental strand, 35675 - 35452
Alignment:
| Q |
74 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtt------tcagcttga------atagaaagaggctatga |
161 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| ||| || ||||||||| | ||||||| ||| ||||| ||||||| |
|
|
| T |
35675 |
ttacttatgtaggttgttttggtttttgttctaatcatggaaaatcatttgagtttagtgttacaaagtgagcttgaaaatctatacaaagatgctatga |
35576 |
T |
|
| Q |
162 |
gaacattgaattcacttgttttttgtatcttcatat-agtttggtgttttatgttagnnnnnnnnttaaaccactgccatatgatgaagcaagagtatta |
260 |
Q |
| |
|
||||||||| |||||||| |||||| |||||| ||| ||||||||||| ||||||| | |||||||| ||||| |||||||||| ||| ||| |
|
|
| T |
35575 |
gaacattgagttcacttgctttttgaatcttc-tatgagtttggtgttctatgtta--aaaaaattaaaaccactaccataggatgaagcaatagtttta |
35479 |
T |
|
| Q |
261 |
gaatcaagtgttgttcgacaggaagat |
287 |
Q |
| |
|
||||||| ||||| | ||||||||||| |
|
|
| T |
35478 |
gaatcaaatgttgattgacaggaagat |
35452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 4e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 74 - 322
Target Start/End: Original strand, 11504368 - 11504628
Alignment:
| Q |
74 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttca------gcttgaa------tagaaagaggctatga |
161 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
11504368 |
ttacttatggtggttgttatggtttttgttctaatcatggcaaataatttgagttcagtgtttcaaagtgagcttgaaaatctatagaaagaggctatga |
11504467 |
T |
|
| Q |
162 |
gaacattg-aattcacttgttttttgtatcttcatatagtttggtgttttatgttagnnnnnnnnttaaaccactgccatatgatgaagcaagagtatta |
260 |
Q |
| |
|
|| || | |||||||||| |||||| || ||| || ||||||||||| ||||||| | |||||||| |||||||||||||||||||| ||| |
|
|
| T |
11504468 |
gaccaatacaattcacttgctttttgaattttcctagagtttggtgttctatgtta-aaaaaatttaaaaccactaccatatgatgaagcaagagtttta |
11504566 |
T |
|
| Q |
261 |
gaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccac |
322 |
Q |
| |
|
||||||||||||||| |||| |||||| ||| ||||||||||||||||| |||||||||||| |
|
|
| T |
11504567 |
gaatcaagtgttgtttgacatgaagatatctttgtaatcgaagacgtctcacttgatgccac |
11504628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 391 - 543
Target Start/End: Original strand, 11504704 - 11504856
Alignment:
| Q |
391 |
gttaaatctgca-tctttatttgatgattccaaaacatcacgtttgctcctatgcacaataagaatttccctaattgaatttgctagataattatcaatt |
489 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| ||||||| | |||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||| | |
|
|
| T |
11504704 |
gttaaatctgcaatctgtttttgatgattctaaaacattatgtttactcctatgcacaataagaatttcaccaattgaatttggtagataattatcaact |
11504803 |
T |
|
| Q |
490 |
aactcatgtagttttgcatttaaaaagagaaatggaactctgaagcaggaatta |
543 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| ||||| |||||| ||||| |
|
|
| T |
11504804 |
aactcatgtagtttttcattt-aaaagggaaatggcactctaaagcagcaatta |
11504856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 18940037 - 18939989
Alignment:
| Q |
74 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaataatt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18940037 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaataatt |
18939989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 18939865 - 18939785
Alignment:
| Q |
238 |
catatgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgc |
319 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| | |||||||| ||| | | ||||||||||||||| ||||||| |
|
|
| T |
18939865 |
catatgatgaatcaagagttttagaatcaagtgttgtttggaaggaagatatctttat-atcgaagacgtcttaattgatgc |
18939785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 8e-27; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 52310958 - 52310803
Alignment:
| Q |
72 |
ccttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttc------agcttga------atagaaagaggctat |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
52310958 |
ccttacttatggtggttgttttggtttttgttctaatcatgacaaataatttg-atttggtgtttcaaagtgagcttgaaaatctatagaaagaggctat |
52310860 |
T |
|
| Q |
160 |
gagaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgtta |
216 |
Q |
| |
|
||||||||| ||||||||| |||||| |||||| || ||||||||||| ||||||| |
|
|
| T |
52310859 |
gagaacattaaattcactttctttttgaatcttcttagagtttggtgttctatgtta |
52310803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 53689939 - 53690094
Alignment:
| Q |
72 |
ccttacttatggtggttgttttggtttttgttctaatcatggcaaataattagaatttagtgtttca------gcttgaa------tagaaagaggctat |
159 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||||||| ||||| |
|
|
| T |
53689939 |
ccttacctatggtggctgttttggtttttgttctaatcatgaaaaataattaga-tttggtgtttcaaagtgagcttgaaaatctatagaaagatgctat |
53690037 |
T |
|
| Q |
160 |
gagaacattgaattcacttgttttttgtatcttcatatagtttggtgttttatgtta |
216 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| || ||||||||||| ||||||| |
|
|
| T |
53690038 |
gagaacattgaattcactttctttttgaatcttcttagagtttggtgttctatgtta |
53690094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 551 - 629
Target Start/End: Original strand, 50717679 - 50717756
Alignment:
| Q |
551 |
attggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttccttttctctccaatcagattttg |
629 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||| |||| ||||||||| ||||| || ||||||| |
|
|
| T |
50717679 |
attggtgtttgcatatttttttagttc-tttgtaagtgttatcttattattgattccttttcactccattctgattttg |
50717756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 551 - 629
Target Start/End: Complemental strand, 50795169 - 50795092
Alignment:
| Q |
551 |
attggtgtttgcgtatatttttagttcatttgtaagtgttatcttactattttttccttttctctccaatcagattttg |
629 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||| |||| ||||||||| ||||| || ||||||| |
|
|
| T |
50795169 |
attggtgtttgcatatttttttagttc-tttgtaagtgttatcttattattgattccttttcactccattctgattttg |
50795092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 31688749 - 31688793
Alignment:
| Q |
74 |
ttacttatggtggttgttttggtttttgttctaatcatggcaaat |
118 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
31688749 |
ttacttatgtaggttgttttggtttttgttctaatcatggaaaat |
31688793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 7828416 - 7828372
Alignment:
| Q |
78 |
ttatggtggttgttttggtttttgttctaatcatggcaaataatt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7828416 |
ttatggtggttgttttggtttttgttctaatcatggcaaataatt |
7828372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 322
Target Start/End: Complemental strand, 37618101 - 37618007
Alignment:
| Q |
228 |
aaaccactgccatatgatgaagcaagagtattagaatcaagtgttgttcgacaggaagatctctctgtaatcgaagacgtcttacttgatgccac |
322 |
Q |
| |
|
|||||||| |||| ||||||| | |||| ||||||||||| |||||| |||| |||| | ||| |||| || ||| || ||||||||||||||| |
|
|
| T |
37618101 |
aaaccacttacataggatgaagaaggagttttagaatcaagcgttgtttgacatgaagttatctttgtagtcaaagtcgacttacttgatgccac |
37618007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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