View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1578-Insertion-11 (Length: 898)

Name: NF1578-Insertion-11
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1578-Insertion-11
NF1578-Insertion-11
[»] chr4 (21 HSPs)
chr4 (135-765)||(23668428-23669054)
chr4 (8-138)||(23667959-23668089)
chr4 (809-898)||(23669086-23669175)
chr4 (646-731)||(5827018-5827103)
chr4 (15-112)||(19748722-19748819)
chr4 (15-112)||(19790987-19791084)
chr4 (20-113)||(12595516-12595609)
chr4 (48-112)||(1872728-1872792)
chr4 (14-89)||(19679770-19679846)
chr4 (17-112)||(19174661-19174756)
chr4 (46-112)||(21025720-21025786)
chr4 (25-107)||(34995418-34995500)
chr4 (46-106)||(17475995-17476054)
chr4 (46-106)||(17683460-17683519)
chr4 (46-106)||(22819768-22819827)
chr4 (17-113)||(24509273-24509369)
chr4 (46-113)||(18882861-18882927)
chr4 (46-113)||(35936084-35936151)
chr4 (25-107)||(18767957-18768039)
chr4 (46-112)||(50831642-50831708)
chr4 (11-112)||(33093003-33093104)
[»] chr8 (8 HSPs)
chr8 (135-768)||(9369290-9369920)
chr8 (811-881)||(9369943-9370013)
chr8 (26-113)||(13106578-13106665)
chr8 (17-107)||(7535768-7535858)
chr8 (20-113)||(37754654-37754747)
chr8 (46-106)||(38958444-38958504)
chr8 (46-113)||(32020347-32020414)
chr8 (26-103)||(40517356-40517433)
[»] chr7 (20 HSPs)
chr7 (135-768)||(47817657-47818286)
chr7 (809-898)||(47817543-47817632)
chr7 (646-764)||(26049284-26049402)
chr7 (20-105)||(1504254-1504339)
chr7 (449-541)||(328695-328786)
chr7 (11-113)||(18889913-18890015)
chr7 (449-541)||(26049171-26049262)
chr7 (25-112)||(23170226-23170313)
chr7 (20-107)||(6109862-6109950)
chr7 (48-112)||(17479131-17479195)
chr7 (48-112)||(17483567-17483631)
chr7 (48-112)||(17569583-17569647)
chr7 (48-112)||(17574019-17574083)
chr7 (25-107)||(35600769-35600851)
chr7 (675-768)||(328549-328641)
chr7 (46-106)||(11352867-11352926)
chr7 (25-112)||(41018761-41018848)
chr7 (46-107)||(10700078-10700139)
chr7 (30-107)||(13401555-13401632)
chr7 (46-107)||(43159467-43159528)
[»] chr3 (15 HSPs)
chr3 (11-113)||(819099-819201)
chr3 (20-113)||(46965986-46966079)
chr3 (21-113)||(46965895-46965987)
chr3 (21-107)||(46965810-46965896)
chr3 (26-109)||(12762579-12762662)
chr3 (50-112)||(41670468-41670530)
chr3 (25-113)||(23770631-23770719)
chr3 (25-113)||(46815743-46815830)
chr3 (46-106)||(46852025-46852084)
chr3 (54-113)||(41637184-41637243)
chr3 (25-106)||(35201433-35201513)
chr3 (46-106)||(51465807-51465866)
chr3 (20-107)||(27511817-27511903)
chr3 (54-113)||(33256435-33256494)
chr3 (20-113)||(9311133-9311226)
[»] chr2 (15 HSPs)
chr2 (17-110)||(8427642-8427735)
chr2 (50-111)||(39147888-39147949)
chr2 (25-112)||(7663954-7664040)
chr2 (20-106)||(42430742-42430828)
chr2 (46-107)||(14255421-14255482)
chr2 (36-113)||(31296646-31296723)
chr2 (8-113)||(44050096-44050200)
chr2 (46-106)||(2563823-2563882)
chr2 (49-113)||(10833533-10833597)
chr2 (25-113)||(28245825-28245912)
chr2 (46-113)||(9634322-9634388)
chr2 (449-541)||(10240933-10241026)
chr2 (46-112)||(1907650-1907716)
chr2 (46-112)||(27490617-27490683)
chr2 (21-78)||(36517289-36517346)
[»] chr1 (12 HSPs)
chr1 (17-107)||(31317322-31317412)
chr1 (26-106)||(43367794-43367874)
chr1 (33-111)||(32923352-32923430)
chr1 (46-106)||(50328034-50328093)
chr1 (11-113)||(44517847-44517949)
chr1 (25-107)||(51571238-51571320)
chr1 (17-114)||(21401487-21401584)
chr1 (46-107)||(29706595-29706656)
chr1 (46-107)||(43560323-43560384)
chr1 (26-106)||(47721507-47721587)
chr1 (26-106)||(47728499-47728579)
chr1 (50-107)||(50239056-50239113)
[»] chr6 (9 HSPs)
chr6 (21-113)||(17181821-17181913)
chr6 (46-106)||(35213454-35213513)
chr6 (32-108)||(2159196-2159272)
chr6 (46-106)||(13143275-13143334)
chr6 (25-112)||(25127717-25127804)
chr6 (49-111)||(5522527-5522589)
chr6 (46-112)||(30036681-30036746)
chr6 (46-107)||(3552047-3552108)
chr6 (46-107)||(10826621-10826682)
[»] chr5 (7 HSPs)
chr5 (46-106)||(189596-189655)
chr5 (46-106)||(8675326-8675385)
chr5 (21-113)||(21353237-21353329)
chr5 (46-106)||(32912157-32912216)
chr5 (26-112)||(4098709-4098796)
chr5 (32-83)||(27546170-27546221)
chr5 (223-310)||(41745267-41745353)


Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 135 - 765
Target Start/End: Original strand, 23668428 - 23669054
Alignment:
Q  135 tctttttctctcaaacaactcagatctgcagaaccaacaacaaaggagcttgcatcattgatggtgcagtgacaagtttaagatccatagagataaaagg 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  23668428 tctttttctctcaaacaactcagatctgcagaaccaacaacaaaggagcttgtatcattgatggtgcagtgacaagtttaagatccatagagataaaaga 23668527  T
Q  235 aaaacaagttatactgatgaaccaaataaacccataaccatttccatatcctcgtgctggatgatagaaactcaaacaggtgcgaagagggtcgctccta 334  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  23668528 aaaacaagttatactgatgaatcaaataaacccataaccatttccatatcctcgtgttggatgatagaaactcaaagaggtgcggagagggtcgctccta 23668627  T
Q  335 aaagtgaaagcttgtaccataaagtgtgggaagaataatgaactctttaatggttgaaaaaattgattttttgttgtaatttgtatgggttttgttcttt 434  Q
      || ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23668628 ccagcgaaagtttgtaccataaaatgtgggaagattaatgaactctttaatggttgaaaaaattgattttttgttgtaatttgtatgggttttgttcttt 23668727  T
Q  435 gttgcagacgtaattaatcttttcatttgaatgtttatgaaaagtgtgaattctgtttgatttattccttaatatacatcaacgatttgttcttttaact 534  Q
    |||||||| |    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23668728 gttgcagatg----taatcttttcaattgaatgtttataaaaagtgtgaattctgtttgatttattccttaatatacatcaacgatttgttcttttacct 23668823  T
Q  535 ttaatgattagtaaagtgtcaatcttattacttaaagggtttctctgannnnnnnnnctcaatagatatgaaaatttgaaaccattctttttaagttcat 634  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  23668824 ttaatgattagtaaagtgtcaatcttattacttaatgggtttctctga-atttttttctcaatagatatgaaaatttgaaaccattctttttaagttcat 23668922  T
Q  635 gc-aaatctgaagattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaa 733  Q
    || |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23668923 gcaaaatctgaggattaatttattgagacatataaacaattatttgaatataggaacagagagtggtgaaggaacaaattggtttctacatgattgagaa 23669022  T
Q  734 atctgcacataaaagtgttgaaagcttgctat 765  Q
    || |||||||||||||||||||||||||||||    
T  23669023 atatgcacataaaagtgttgaaagcttgctat 23669054  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 23667959 - 23668089
Alignment:
Q  8 ctttctttgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  23667959 ctttctttattattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcactaaaatgattgtttaattaacaca 23668058  T
Q  108 tctcttcctggaattactttgttgttgtctt 138  Q
    ||||||| |||||||||||||||||||||||    
T  23668059 tctcttcatggaattactttgttgttgtctt 23668089  T

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Target: chr4; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 809 - 898
Target Start/End: Original strand, 23669086 - 23669175
Alignment:
Q  809 ggggaatgagattgaagagggaaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatag 898  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23669086 ggggaatgagattgaagagggaaatgattggaagcttattcgtgggagaataagacaaaaaggaaataatcaagtgtggttggtttatag 23669175  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 646 - 731
Target Start/End: Complemental strand, 5827103 - 5827018
Alignment:
Q  646 gattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgag 731  Q
    ||||||||||||||| |||||| |||||||||||||||||  || | ||| ||||||| |||||||||||||||||||||||||||    
T  5827103 gattaatttattgagacatatagacaattatttgaatataacaacacagaatggtgaaagaacaaattggtttctacatgattgag 5827018  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 19748722 - 19748819
Alignment:
Q  15 tgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||| |||| |||||||||| |||| |||| |||||||||||||| ||||||||  |||||||| |||||||||| |||||| |||||||||||||||    
T  19748722 tgttgttttggttttcgtgttaatacctatttttctttgtaaatttatgattgtttcaaaagttatcaccaaaataattgttcaaataacacatctct 19748819  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 19791084 - 19790987
Alignment:
Q  15 tgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||| |||| |||||||||| |||| |||| |||||||||||||| ||||||||  |||||||| |||||||||| |||||| |||||||||||||||    
T  19791084 tgttgttttggttttcgtgttaatacctatttttctttgtaaatttatgattgtttcaaaagttatcaccaaaataattgttcaaataacacatctct 19790987  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 12595609 - 12595516
Alignment:
Q  20 ttttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||| ||||||||||||||| |||  || |||| |||||| ||| ||||||||||| |||||| ||||||| ||||| ||||||||||||||||    
T  12595609 ttttggttttcgtgtcaatacctactttcctttataaatttatggttgtcccaaaaattgtcatcaaaatggttgttcaaataacacatctctt 12595516  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 1872728 - 1872792
Alignment:
Q  48 tctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| |||||||||||||||||| ||| | | ||||||||| |||||||||||||||    
T  1872728 tctttgtaaatttatgattgtcccaaaagttatcatccagatgattgttcaaataacacatctct 1872792  T

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Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 19679770 - 19679846
Alignment:
Q  14 ttgttattttagttttcgtgtcaataacta-tgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaat 89  Q
    ||||| ||||| |||||||||||||| ||| | ||| |||||||||||||||||||| ||||||||||||| |||||    
T  19679770 ttgttgttttaattttcgtgtcaatacctaatttttttttgtaaattaatgattgtcacaaaagttgtcacaaaaat 19679846  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 19174756 - 19174661
Alignment:
Q  17 ttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||  |||||||||  ||| |||  |||||||||||||| ||| ||||| |||||||||||||  || || ||||| |||||||||||||||    
T  19174756 ttattttgattttcgtgttgatacctaattttctttgtaaatttatgtttgtctcaaaagttgtcacacaattggttgttcaaataacacatctct 19174661  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 21025720 - 21025786
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    ||||||||||||||| || ||||| |||||||||||||  || |||||||| |||||||||| ||||    
T  21025720 tttctttgtaaattagtggttgtcacaaaagttgtcactcaattgattgttcaaataacacacctct 21025786  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 34995418 - 34995500
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||| |||||||||| |||| ||||||| |||||| ||| ||||||| |||||| |||   ||||||||||| ||||||||||    
T  34995418 gtttccgtgtcaatacctatttttctttataaatttatggttgtccctaaagttatcaaacaaatgattgttcaaataacaca 34995500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 17475995 - 17476054
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| ||||||||  | |||||||||||||| |||||||| |||||||||    
T  17475995 tttctttgtaaatta-tgattgtcaaataagttgtcaccaaattgattgttcaaataacac 17476054  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 17683460 - 17683519
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||||    
T  17683460 tttctttgtaaatta-tggttgtcccaaaagttgtcaaccaaatggttgttcaaataacac 17683519  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 22819768 - 22819827
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||||    
T  22819768 tttctttgtaaatta-tggttgtcccaaaagttgtcaaccaaatggttgttcaaataacac 22819827  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 24509369 - 24509273
Alignment:
Q  17 ttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||| |||| ||||||| || |||| ||||||||||||||| || ||||| ||||| || ||||  ||||  ||||| |||||||||| |||||    
T  24509369 ttattttggtttccgtgtcactatctatttttctttgtaaattagtggttgtcacaaaaattatcactcaaatagttgttcaaataacacacctctt 24509273  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 18882927 - 18882861
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||||||||||| ||||| | ||||||||||||| | ||||| ||||| ||||||||| ||||||    
T  18882927 tttctttgtaaatta-tgatttttccaaaagttgtcaaccaaatggttgttcaaataacacttctctt 18882861  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 35936084 - 35936151
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||||| |||  ||| |||||| ||||||||||||  ||||||||||| |||||||||| |||||    
T  35936084 tttctttgtgaatgtatggttgtcctaaaagttgtcacacaaatgattgttcaaataacacacctctt 35936151  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 18767957 - 18768039
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||| |||||||| |||  ||||||| |||||| ||| |||||  ||||||| ||||  |||| |||||||||||||||||    
T  18767957 gttttcatgtcaatacctacttttctttataaatttatggttgtcttaaaagttatcacacaaataattgtttaaataacaca 18768039  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 50831708 - 50831642
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| | ||| ||||||||||||||||||   ||||| ||||| |||||||||| ||||    
T  50831708 tttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactct 50831642  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 33093104 - 33093003
Alignment:
Q  11 tctttgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatct 110  Q
    ||||| || |||| ||||||||||||||| |||  ||||||||||||||||  |||||| || ||||| ||    ||||| ||||| |||||||||| ||    
T  33093104 tctttattgttttggttttcgtgtcaatacctacttttctttgtaaattaactattgtctcataagttatcgtataaatggttgttcaaataacacacct 33093005  T
Q  111 ct 112  Q
    ||    
T  33093004 ct 33093003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 135 - 768
Target Start/End: Original strand, 9369290 - 9369920
Alignment:
Q  135 tctttttctctcaaacaactcagatctgcagaaccaacaacaaaggagcttgcatcattgatggtgcagtgacaagtttaagatccatagagataaaagg 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9369290 tctttttctctcaaacaacttagatctgcagaaccaacaacaaaggagcttgcatcattgatggtgcagtgacaagtttaagatccatagagataaaagg 9369389  T
Q  235 aaaacaagttatactgatgaaccaaataaacccataaccatttccatatcctcgtgctggatgatagaaactcaaacaggtgcgaagagggtcgctccta 334  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  9369390 aaaacaagttatactgatgaaccaaataaaaccataaccatttccaaaccctcgtgttggatgatagaaactcaaagaggtgcggagagggtcgctccta 9369489  T
Q  335 aaagtgaaagcttgtaccataaagtgtgggaagaataatgaactctttaatggttgaaaaaattgattttttgttgtaatttgtatgggttttgttcttt 434  Q
    | || ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  9369490 acagcgaaagtttgtaccataaagtgtgggaagaataatgaactctttaatggttggaaaatttgattttttgttgtaatttgtatgggttgtgttcttt 9369589  T
Q  435 gttgcagacgtaattaatcttttcatttgaatgtttatgaaaagtgtgaattctgtttgatttattccttaatatacatcaacgatttgttcttttaact 534  Q
    |||||||| |    |||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| |||||||||||||| ||    
T  9369590 gttgcagatg----taatcttttcatttgaatgtttatgaaaagtgtgaatcatgtttgatttattcctcaatatacatcaatgatttgttcttttacct 9369685  T
Q  535 ttaatgattagtaaagtgtcaatcttattacttaaagggtttctctgannnnnnnnnctcaatagatatgaaaatttgaaaccattctttttaagttcat 634  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||         ||||||||||||||||||||||||||||||||||||| |||||    
T  9369686 ttaatgattagtaaagtgtcaatcttattatttaataggtttctctgaatttttttactcaatagatatgaaaatttgaaaccattctttttaaattcat 9369785  T
Q  635 gc-aaatctgaagattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaa 733  Q
    || |||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  9369786 gcaaaatgtgaggattaatttattgagacatataaacaattatttaaatataggaatagagagtggtgaaggaacaaattgatttttacatgattgagaa 9369885  T
Q  734 atctgcacataaaagtgttgaaagcttgctattgt 768  Q
    || ||||||||||||||||||||||||||||||||    
T  9369886 atatgcacataaaagtgttgaaagcttgctattgt 9369920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 811 - 881
Target Start/End: Original strand, 9369943 - 9370013
Alignment:
Q  811 ggaatgagattgaagagggaaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaa 881  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  9369943 ggaatgagattgaagagggaaaggattggaagcttagccgtgggagaataagacaaaaaggtaataatcaa 9370013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 13106578 - 13106665
Alignment:
Q  26 ttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||| ||||||||| || | |||||||||||||| ||| ||||   ||||||||||||| ||||| ||||| |||||||||| |||||    
T  13106578 tttttgtgtcaatacctctttttctttgtaaatttatggttgttataaaagttgtcacctaaatggttgttcaaataacacaactctt 13106665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 7535768 - 7535858
Alignment:
Q  17 ttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    ||||||||||||| |||| |||| ||   |||||||||||||| |||||||||||| || ||||||   |||| ||| |||||||||||||    
T  7535768 ttattttagtttttgtgttaatacctcattttctttgtaaatttatgattgtcccataaattgtcattcaaattattatttaaataacaca 7535858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 37754654 - 37754747
Alignment:
Q  20 ttttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||| |||| |||| ||||| |||| |||||||||||||| |   |||| |||||||||||||   ||||| |||||||||||||||| |||||    
T  37754654 ttttggtttccgtgccaatacctatttttctttgtaaatttaaagttgttccaaaagttgtcatacaaatggttgtttaaataacacacctctt 37754747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 38958504 - 38958444
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    |||||||||||||| ||| |||| |||||| ||||||  |||||||||||| |||||||||    
T  38958504 tttctttgtaaattgatggttgttccaaaaattgtcattaaaatgattgttcaaataacac 38958444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 32020414 - 32020347
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||| |||||| ||||||||||||||| |||||||  |||| |||||| ||||| ||| ||||||    
T  32020414 tttctttataaatttatgattgtcccaaaatttgtcacataaattattgttcaaataccacgtctctt 32020347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 40517356 - 40517433
Alignment:
Q  26 ttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataa 103  Q
    |||||||||||||| |||  |||||||||||||| ||| |||||  | ||| |||||  |||||||||||| ||||||    
T  40517356 ttttcgtgtcaatatctacttttctttgtaaatttatggttgtcttataagatgtcataaaaatgattgttcaaataa 40517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 135 - 768
Target Start/End: Complemental strand, 47818286 - 47817657
Alignment:
Q  135 tctttttctctcaaacaactcagatctgcagaaccaacaacaaaggagcttgcatcattgatggtgcagtgacaagtttaagatccatagagataaaagg 234  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47818286 tctttttctctcaaacaactcagatatgcagaaccaacaacaaaggagcttgcatcattgatggtgcagtgacaagtttaaggtccatagagataaaagg 47818187  T
Q  235 aaaacaagttatactgatgaaccaaataaacccataaccatttccatatcctcgtgctggatgatagaaactcaaacaggtgcgaagagggtcgctccta 334  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  47818186 aaaacaagttatactgatgaaccaaataaacccataaccatttcgatatcctcgtgttggatgatagaaactcaaagaggtgcggagagggtcgctccta 47818087  T
Q  335 aaagtgaaagcttgtaccataaagtgtgggaagaataatgaactctttaatggttgaaaaaattgattttttgttgtaatttgtatgggttttgttcttt 434  Q
    | || ||||| ||||||||||||||||| |||||| ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||    
T  47818086 acagcgaaagtttgtaccataaagtgtgagaagaagaatgaaccctttaatggttgaaaattttgattttttgttgtaatttgtatgggttgtgttcttt 47817987  T
Q  435 gttgcagacgtaattaatcttttcatttgaatgtttatgaaaagtgtgaattctgtttgatttattccttaatatacatcaacgatttgttcttttaact 534  Q
    ||||||    ||  ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||    
T  47817986 gttgca----tatgtaatcttttcatttgaatg-ttatgaaaagtgtgaatcctgtttcatttattcctcaatatacatcaacgatttgttcttttacct 47817892  T
Q  535 ttaatgattagtaaagtgtcaatcttattacttaaagggtttctctgannnnnnnnnctcaatagatatgaaaatttgaaaccattctttttaagttcat 634  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||    
T  47817891 ttaatgattagtaaagtgtcaatcttattatttaatgggtttctctgaatttattttctcaatagatatgaaaatttgaaaccattctttttaagttcat 47817792  T
Q  635 gc-aaatctgaagattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaa 733  Q
    || |||| ||| ||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||    
T  47817791 gcaaaatttgaggattaatttattgagacatataaacaattatttgaatataggaacatagagtggtgaatgaacaaataggtttctacatgattgagaa 47817692  T
Q  734 atctgcacataaaagtgttgaaagcttgctattgt 768  Q
    |||||||||||| ||||||||||||||||||||||    
T  47817691 atctgcacataatagtgttgaaagcttgctattgt 47817657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 809 - 898
Target Start/End: Complemental strand, 47817632 - 47817543
Alignment:
Q  809 ggggaatgagattgaagagggaaaggattggaagcttagtcgtgggagaataagacaaaaaggaaataatcaagtgtagttggtttatag 898  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47817632 ggggaatgagattgaagagggaaaggattggaagcttagccgtgggagaataagacaaaaaggaaataatcaagtgtggttggtttatag 47817543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 646 - 764
Target Start/End: Original strand, 26049284 - 26049402
Alignment:
Q  646 gattaatttattgaggcatataaacaattatttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataa 745  Q
    ||||||||||||||| |||||  ||| |||||||||||||  || | ||| ||||||| |||||||||| |||||||||||||||||||| |||||  ||    
T  26049284 gattaatttattgagacatatggacagttatttgaatataacaacacagaatggtgaaagaacaaattgttttctacatgattgagaaatttgcaccgaa 26049383  T
Q  746 aagtgttgaaagcttgcta 764  Q
    ||||||| | |||||||||    
T  26049384 aagtgtttatagcttgcta 26049402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 1504339 - 1504254
Alignment:
Q  20 ttttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataaca 105  Q
    |||| |||||||| |||||| |||  ||||||| |||||| |||||||||||||||||| ||||||||||| ||||| ||||||||    
T  1504339 ttttggttttcgtatcaatacctacttttctttataaatttatgattgtcccaaaagttatcaccaaaatggttgttcaaataaca 1504254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 449 - 541
Target Start/End: Complemental strand, 328786 - 328695
Alignment:
Q  449 taatcttttcatttgaatgtttatgaaaagtgtgaattctgtttgatttattccttaatatacatcaacgatttgttcttttaactttaatga 541  Q
    |||||||||||||| |||| |||||||| |||||||| ||||||||||||||||| | ||||  |||| |||||||||||||| | |||||||    
T  328786 taatcttttcattttaatggttatgaaa-gtgtgaatcctgtttgatttattcctcattatatgtcaaagatttgttcttttaccattaatga 328695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 18890015 - 18889913
Alignment:
Q  11 tctttgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatct 110  Q
    ||||| |||||||  ||| ||||| |||| |||  |||||||||||||| |||||||||| |||| |||||||  ||||||||||| ||||||||||| |    
T  18890015 tctttattattttgttttccgtgttaatacctaattttctttgtaaatttatgattgtcctaaaaattgtcacacaaatgattgttgaaataacacatgt 18889916  T
Q  111 ctt 113  Q
    |||    
T  18889915 ctt 18889913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 449 - 541
Target Start/End: Original strand, 26049171 - 26049262
Alignment:
Q  449 taatcttttcatttgaatgtttatgaaaagtgtgaattctgtttgatttattccttaatatacatcaacgatttgttcttttaactttaatga 541  Q
    |||||||||||||| |||| |||||||| ||| |||| |||||||||||||| |||| ||||  |||| ||||||||||||||  ||||||||    
T  26049171 taatcttttcattttaatggttatgaaa-gtgagaatcctgtttgatttattacttattatatgtcaaagatttgttcttttacttttaatga 26049262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 23170226 - 23170313
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||| ||||||||||  ||| || |||| |||||| ||| || ||| ||||||||||||||||||| |||||||||||| ||||||||    
T  23170226 gtttacgtgtcaatacatattttcctttataaatttatgcttatcctaaaagttgtcaccaaaatggttgtttaaataatacatctct 23170313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 6109950 - 6109862
Alignment:
Q  20 ttttagttttcgtgtcaataacta-tgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||| |||||||||||||||  || | |||||||||||||  |||||||||| | ||||||||| ||||||||||||| |||| |||||    
T  6109950 ttttggttttcgtgtcaatacataatttttctttgtaaatctatgattgtccaataagttgtcaacaaaatgattgttcaaatcacaca 6109862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 17479131 - 17479195
Alignment:
Q  48 tctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| |||| ||||||||||||| ||||  | ||| |||||||||||||||||||||    
T  17479131 tctttgtaaatttatgactgtcccaaaagttatcactcagatggttgtttaaataacacatctct 17479195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 17483567 - 17483631
Alignment:
Q  48 tctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| |||| ||||||||||||| ||||  | ||| |||||||||||||||||||||    
T  17483567 tctttgtaaatttatgactgtcccaaaagttatcactcagatggttgtttaaataacacatctct 17483631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 17569647 - 17569583
Alignment:
Q  48 tctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| |||| ||||||||||||| ||||  | ||| |||||||||||||||||||||    
T  17569647 tctttgtaaatttatgactgtcccaaaagttatcactcagatggttgtttaaataacacatctct 17569583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 17574083 - 17574019
Alignment:
Q  48 tctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| |||| ||||||||||||| ||||  | ||| |||||||||||||||||||||    
T  17574083 tctttgtaaatttatgactgtcccaaaagttatcactcagatggttgtttaaataacacatctct 17574019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 35600769 - 35600851
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||| ||||||| || |||  ||||||||||||||| || ||||| |||||||||||||  ||||| ||||| ||||||||||    
T  35600769 gtttccgtgtcactatctacttttctttgtaaattagtggttgtcacaaaagttgtcactcaaatggttgttcaaataacaca 35600851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 768
Target Start/End: Complemental strand, 328641 - 328549
Alignment:
Q  675 atttgaatataggaatagagagtggtgaaggaacaaattggtttctacatgattgagaaatctgcacataaaagtgttgaaagcttgctattgt 768  Q
    ||||||||||| ||| | ||| ||||||||||||||||||| ||||| ||||||||| ||| |||||  ||||| || || |||||| ||||||    
T  328641 atttgaatataagaacacagaatggtgaaggaacaaattggattctatatgattgaggaat-tgcaccgaaaagcgtggatagcttgatattgt 328549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 11352926 - 11352867
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||||    
T  11352926 tttctttgtaaatta-tggttgtcccaaaagttgtcaaccaaatggttgttcaaataacac 11352867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 41018761 - 41018848
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    ||||| |||| |||| || | |||||||||||||| |||||||||  ||||||||||||| ||||  || || |||||||||| ||||    
T  41018761 gtttttgtgttaatacctctttttctttgtaaatttatgattgtcataaaagttgtcacctaaatagttattcaaataacacaactct 41018848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 10700139 - 10700078
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    ||||||| |||| | ||| ||||||||||||||||||   ||||||||||| ||||||||||    
T  10700139 tttctttataaaattatggttgtcccaaaagttgtcaatcaaatgattgttcaaataacaca 10700078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 13401632 - 13401555
Alignment:
Q  30 cgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    ||||||| || |||| || |||||||||||| || ||||| ||||| |||||||  ||||| ||||| ||||||||||    
T  13401632 cgtgtcactatctattttcctttgtaaattagtggttgtcacaaaaattgtcacttaaatggttgttcaaataacaca 13401555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 43159528 - 43159467
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||||||||||| ||| |||||   |||||||||||| ||||| ||||| ||||||||||    
T  43159528 tttctttgtaaatttatggttgtcatcaaagttgtcacctaaatggttgttcaaataacaca 43159467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 819201 - 819099
Alignment:
Q  11 tctttgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatct 110  Q
    ||||| || ||||| ||||||| |||||| || | ||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||    
T  819201 tctttattcttttatttttcgtatcaatacctgtttttctttgtaaattaatgattatctcaaaagttgtcatcaaaatggttgtttaaataacacatct 819102  T
Q  111 ctt 113  Q
    |||    
T  819101 ctt 819099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 46966079 - 46965986
Alignment:
Q  20 ttttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||| ||||||||||| ||| |||| |||||||||||||| |||||||||| ||||||||||||  ||||| ||||| |||||||||| |||||    
T  46966079 ttttggttttcgtgtcgatatctatctttctttgtaaatttatgattgtccgaaaagttgtcacacaaatggttgttcaaataacacacctctt 46965986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 46965987 - 46965895
Alignment:
Q  21 tttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||||| ||||||||| |||  |||||||||||||| |||||||||| ||||||||||||  ||||  ||||| ||||||||||||||||    
T  46965987 tttagtttttgtgtcaatacctacttttctttgtaaatttatgattgtcctaaaagttgtcacacaaattgttgttcaaataacacatctctt 46965895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 46965896 - 46965810
Alignment:
Q  21 tttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    ||||||||| ||||||||| |||  |||||||||||||| ||| |||||| ||||||||||||  ||||||| ||||||||||||||    
T  46965896 tttagtttttgtgtcaatacctacttttctttgtaaatttatggttgtcctaaaagttgtcacacaaatgatcgtttaaataacaca 46965810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 12762662 - 12762579
Alignment:
Q  26 ttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatc 109  Q
    |||| |||||||||||||| |||||||||||||| ||| |||||||| || ||||||   ||||||||||| ||||||||||||    
T  12762662 tttttgtgtcaataactatttttctttgtaaatttatggttgtcccataaattgtcatgtaaatgattgttcaaataacacatc 12762579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 41670530 - 41670468
Alignment:
Q  50 tttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    ||||||||||| |||||||| |||||||||||||  ||||| ||||| |||||||||||||||    
T  41670530 tttgtaaattagtgattgtcacaaaagttgtcactcaaatggttgttcaaataacacatctct 41670468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 23770719 - 23770631
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||| |||||||||| |||  || |||| ||||||| || ||||| |||||||||||||  ||||| ||||| ||||||||||||||||    
T  23770719 gtttccgtgtcaatatctactttcctttataaattagtggttgtcacaaaagttgtcactcaaatggttgttcaaataacacatctctt 23770631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 46815830 - 46815743
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||||||||||| | || ||||||| |||||| ||  ||||| ||||| |||||||||||||| ||||| |||||| |||||||||    
T  46815830 gttttcgtgtcaatatccat-tttctttataaatttatagttgtctcaaaaattgtcaccaaaatggttgttcaaataatacatctctt 46815743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 46852084 - 46852025
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||| ||||| |||||||||    
T  46852084 tttctttgtaaatta-tgattgtcccaaaagttgtcaaccaaatggttgttcaaataacac 46852025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 41637243 - 41637184
Alignment:
Q  54 taaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||||||||| |||||||||||||| ||| |||||| |||||| ||||| ||||||||||    
T  41637243 taaattaatggttgtcccaaaagttatcatcaaaataattgttcaaatagcacatctctt 41637184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 35201513 - 35201433
Alignment:
Q  25 gttttcgtgtcaataacta-tgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| ||| | ||||||||||||||| ||||||||  | |||||||||||||| |||||||| |||||||||    
T  35201513 gttttcgtgtcaata-ctactttttctttgtaaatta-tgattgtcaaataagttgtcaccaaattgattgttcaaataacac 35201433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 51465866 - 51465807
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||||    
T  51465866 tttctttgtaaatta-tggttgtcccaaaagttgtcaaccaaatggttgttcaaataacac 51465807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 27511817 - 27511903
Alignment:
Q  20 ttttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||| |||| |||||||||| |||  |||||||||||||| ||| |||| ||||||||||||||  ||||  ||||| ||||||||||    
T  27511817 ttttggtttccgtgtcaatatctacttttctttgtaaatttatggttgt-ccaaaagttgtcacacaaattgttgttcaaataacaca 27511903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 33256435 - 33256494
Alignment:
Q  54 taaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||||| ||| |||||| ||||||||||||  ||||| ||||| ||||||||||||||||    
T  33256435 taaatttatggttgtcctaaaagttgtcacacaaatggttgttcaaataacacatctctt 33256494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 9311133 - 9311226
Alignment:
Q  20 ttttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttg-tcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||| ||||||||||||||| |||  ||||||| |||||  ||| |||||||| |||||| ||| | ||||||||||| |||||||||| |||||    
T  9311133 ttttggttttcgtgtcaatacctacttttctttttaaatatatggttgtcccataagttgttcaac-aaatgattgttcaaataacacaactctt 9311226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 8427642 - 8427735
Alignment:
Q  17 ttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatct 110  Q
    ||||||| |||||||||||||||||||  || |||| |||||| ||| |||| |||||||||| ||||||||| |||||| |||||||||||||    
T  8427642 ttattttggttttcgtgtcaataactaatttcctttataaatttatggttgttccaaaagttgccaccaaaataattgttcaaataacacatct 8427735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 39147888 - 39147949
Alignment:
Q  50 tttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctc 111  Q
    |||||||||| ||||||||||||||||||||||  |||||| ||||| ||||||||||||||    
T  39147888 tttgtaaatttatgattgtcccaaaagttgtcattaaaatggttgttcaaataacacatctc 39147949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 7664040 - 7663954
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    ||||| ||||||||| || | |||||||||||||| ||| |||||  |||| |||||||| ||||||||||| |||||||||| ||||    
T  7664040 gtttttgtgtcaatacctctttttctttgtaaatttatggttgtcataaaa-ttgtcacctaaatgattgttcaaataacacaactct 7663954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 42430742 - 42430828
Alignment:
Q  20 ttttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    |||| |||| |||||||||| |||  |||||||||||| | ||| |||| ||||||||||||||  ||||| ||||| |||||||||    
T  42430742 ttttggtttccgtgtcaatacctacttttctttgtaaacttatggttgttccaaaagttgtcacacaaatggttgttcaaataacac 42430828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 14255421 - 14255482
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||||||||||| ||| ||||||||||||||||| |  ||||| ||||| ||||||||||    
T  14255421 tttctttgtaaatttatggttgtcccaaaagttgtcgcataaatggttgttcaaataacaca 14255482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 31296646 - 31296723
Alignment:
Q  36 aataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||| |||| |||||||||||||| ||| |||||  ||||||||||||   |||| ||||| ||||||||||||||||    
T  31296646 aatatctatttttctttgtaaatttatggttgtcataaaagttgtcacactaatggttgttcaaataacacatctctt 31296723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 44050096 - 44050200
Alignment:
Q  8 ctttctttgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||||| ||  ||| |||| ||||||||||  ||| |||||||||||||| ||| ||||| ||||||||||| |  ||||| ||||| ||||||||||    
T  44050096 ctttctttattgctttggtttccgtgtcaatacatat-tttctttgtaaatttatggttgtctcaaaagttgtcgcacaaatggttgttcaaataacaca 44050194  T
Q  108 tctctt 113  Q
     |||||    
T  44050195 cctctt 44050200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 2563823 - 2563882
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||| ||||||| ||||||||| ||||||||||| | ||||||||||| |||||||||    
T  2563823 tttctttataaatta-tgattgtcctaaaagttgtcaaccaaatgattgttcaaataacac 2563882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 10833597 - 10833533
Alignment:
Q  49 ctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||||||||||| || ||||| |||||||||||||  || || ||||| ||||||||||||||||    
T  10833597 ctttgtaaattagtggttgtcacaaaagttgtcactcaattggttgttcaaataacacatctctt 10833533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 113
Target Start/End: Original strand, 28245825 - 28245912
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||||||||  |||| |||| |||||||||||||||| | ||||  |||||||||||| | ||||| ||||| ||||||||| ||||||    
T  28245825 gttttcgtgcaaatacctatttttctttgtaaattaagg-ttgtttcaaaagttgtcaaccaaatggttgttcaaataacacttctctt 28245912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 9634388 - 9634322
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||||||||||| || |||| | ||||||||||| | ||||||||||| ||||||||| ||||||    
T  9634388 tttctttgtaaatta-tggttgttcaaaaagttgtcaaccaaatgattgttcaaataacacttctctt 9634322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 449 - 541
Target Start/End: Original strand, 10240933 - 10241026
Alignment:
Q  449 taatcttttcatttgaatgtttatgaaaagtgtgaattctgt--ttgatttattccttaatatacatcaacgatttgttcttttaactttaatga 541  Q
    |||||||||||||||||||  ||||||| |||||||| | ||  |||||| ||||||   |||| ||||| |||||||||||||| |||||||||    
T  10240933 taatcttttcatttgaatggatatgaaa-gtgtgaatcccgtggttgattcattcctcgttatatatcaatgatttgttcttttacctttaatga 10241026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 1907716 - 1907650
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||||| ||| |||||  | ||||||||| | ||||||||||| |||||||||| ||||    
T  1907716 tttctttgtaaatttatggttgtcatacaagttgtcatctaaatgattgttcaaataacacaactct 1907650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 27490683 - 27490617
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| |  |||||||| |||||||||||| |||||||  |||| |||||||||| ||||    
T  27490683 tttctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacacaactct 27490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 36517289 - 36517346
Alignment:
Q  21 tttagttttcgtgtcaataacta-tgtttctttgtaaattaatgattgtcccaaaagtt 78  Q
    ||||||||| |||||||||| || | ||||||||||||||| |||||||||||||||||    
T  36517289 tttagtttttgtgtcaataattactttttctttgtaaatta-tgattgtcccaaaagtt 36517346  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 31317412 - 31317322
Alignment:
Q  17 ttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||||||||| |||||||||| |||  |||||||||||||  ||||||||||||||| |||||||  ||||  ||||||||||||||||    
T  31317412 ttattttagtttccgtgtcaatatctacatttctttgtaaatctatgattgtcccaaaaattgtcacacaaattgttgtttaaataacaca 31317322  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 43367874 - 43367794
Alignment:
Q  26 ttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||| ||||  ||| |||||||||||||| ||| |||| | ||||||||||||  ||||||||||| |||||||||    
T  43367874 ttttcgtgtaaatatttatttttctttgtaaatttatggttgttctaaaagttgtcacacaaatgattgttcaaataacac 43367794  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 32923352 - 32923430
Alignment:
Q  33 gtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctc 111  Q
    |||||||  ||| ||| |||||||||| ||||||||||||||| ||||| |  ||||||||||| |||| |||||||||    
T  32923352 gtcaatatatatttttatttgtaaatttatgattgtcccaaaaattgtctcacaaatgattgttcaaattacacatctc 32923430  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 50328093 - 50328034
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||||    
T  50328093 tttctttgtaaatta-tggttgtcccaaaagttgtcaaccaaatggttgttcaaataacac 50328034  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 44517949 - 44517847
Alignment:
Q  11 tctttgttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatct 110  Q
    ||||| |||||||  |||| |||||||||  ||| |||||||||||||| ||  || ||||||||||| ||||   |||| ||||| |||||||||| ||    
T  44517949 tctttattattttgatttttgtgtcaatacatatttttctttgtaaatttatagttatcccaaaagttatcacacgaatggttgttcaaataacacaact 44517850  T
Q  111 ctt 113  Q
    |||    
T  44517849 ctt 44517847  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 51571320 - 51571238
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    ||||| ||||||||| || | |||||||||||| | ||| ||||||||||| ||||||   ||||| ||||| ||||||||||    
T  51571320 gtttttgtgtcaatacctctttttctttgtaaaattatggttgtcccaaaaattgtcaatcaaatggttgttcaaataacaca 51571238  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 21401487 - 21401584
Alignment:
Q  17 ttattttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctcttc 114  Q
    ||||||| ||||| ||||||||| ||   |||||||||||| |  |||||||  |||||||||||||  |||||  |||| |||||||||| ||||||    
T  21401487 ttattttggtttttgtgtcaatacctcattttctttgtaaaattttgattgtttcaaaagttgtcacataaatggatgttcaaataacacaactcttc 21401584  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 29706656 - 29706595
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||||||||||| ||| || ||  ||||||||||||  ||||||||||| ||||||||||    
T  29706656 tttctttgtaaatttatggttatcttaaaagttgtcacagaaatgattgttcaaataacaca 29706595  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 43560323 - 43560384
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||| |||||||||| || ||||| ||||| |||||||  ||||||||||| ||||||||||    
T  43560323 tttccttgtaaattagtggttgtcacaaaaattgtcactcaaatgattgttcaaataacaca 43560384  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 47721507 - 47721587
Alignment:
Q  26 ttttcgtgtcaataacta-tgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||  || | ||||||||||||||| || |||||||| ||||||||  | ||||| |||||||||||||||    
T  47721507 ttttcgtgtcaatacttactttttctttgtaaatta-tggttgtcccataagttgtccactaaatggttgtttaaataacac 47721587  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 47728499 - 47728579
Alignment:
Q  26 ttttcgtgtcaataacta-tgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||  || | ||||||||||||||| || |||||||| ||||||||  | ||||| |||||||||||||||    
T  47728499 ttttcgtgtcaatacttactttttctttgtaaatta-tggttgtcccataagttgtccactaaatggttgtttaaataacac 47728579  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 50239113 - 50239056
Alignment:
Q  50 tttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    ||||||||||| || ||||| |||||||||||||  ||||| ||||| ||||||||||    
T  50239113 tttgtaaattagtggttgtcacaaaagttgtcactcaaatggttgttcaaataacaca 50239056  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 17181913 - 17181821
Alignment:
Q  21 tttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    |||||||||  |||||||| || | |||| ||||||||| |||||||||  ||||||||| ||| ||||| |||||||||||||||| |||||    
T  17181913 tttagtttttatgtcaatacctctttttcattgtaaatttatgattgtcataaaagttgttacctaaatggttgtttaaataacacaactctt 17181821  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 35213513 - 35213454
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||| ||||| |||||||||    
T  35213513 tttctttgtaaatta-tgattgtcccaaaagttgtcaaccaaatggttgttcaaataacac 35213454  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 2159272 - 2159196
Alignment:
Q  32 tgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacat 108  Q
    |||||||| |||| |||||||||||||| ||| |||| ||| ||||| |||   | |||||||||||||||||||||    
T  2159272 tgtcaatatctatttttctttgtaaatttatggttgttccataagttatcatacacatgattgtttaaataacacat 2159196  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 13143334 - 13143275
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||||    
T  13143334 tttctttgtaaatta-tggttgtcccaaaagttgtcaaccaaatggttgttcaaataacac 13143275  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 25127804 - 25127717
Alignment:
Q  25 gttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||| |||||||||| |||  |||||||||||||| ||| |||||||| || ||||| |  ||||| ||||| |||||||||| ||||    
T  25127804 gtttccgtgtcaatacctacttttctttgtaaatttatggttgtcccagaatttgtcgcacaaatggttgttcaaataacacacctct 25127717  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 5522589 - 5522527
Alignment:
Q  49 ctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctc 111  Q
    |||| |||||| ||| |||| ||||||||||||||||||||  ||||| ||||||||| ||||    
T  5522589 ctttataaatttatggttgttccaaaagttgtcaccaaaattgttgttcaaataacacgtctc 5522527  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 30036746 - 30036681
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    |||||||||||| || ||||||||  | |||||||||||||| |||||||| ||||||||| |||||    
T  30036746 tttctttgtaaagta-tgattgtcaaataagttgtcaccaaattgattgttcaaataacacttctct 30036681  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 3552108 - 3552047
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    |||||||||||||| |||||| || |||||||| ||| | ||||| ||||| ||||||||||    
T  3552108 tttctttgtaaatttatgattatcacaaaagttatcatccaaatggttgttcaaataacaca 3552047  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 10826621 - 10826682
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacaca 107  Q
    ||||||||||||||| || ||||| |||||||| ||||  ||||| ||||| ||||||||||    
T  10826621 tttctttgtaaattagtggttgtcacaaaagttatcactcaaatggttgttcaaataacaca 10826682  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 189655 - 189596
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||| ||||||| ||||||||||||||||||||| | ||||||||||| |||||||||    
T  189655 tttctttataaatta-tgattgtcccaaaagttgtcaaccaaatgattgttcaaataacac 189596  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 8675385 - 8675326
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||||||||||| || |||||||||||||||||| | ||||| ||||| |||||||||    
T  8675385 tttctttgtaaatta-tggttgtcccaaaagttgtcaaccaaatggttgttcaaataacac 8675326  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 21353237 - 21353329
Alignment:
Q  21 tttagttttcgtgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctctt 113  Q
    ||||||||| |||| ||||  | | |||||||||||| | ||| ||||||||||||||||||   ||||| ||||||||||||| || |||||    
T  21353237 tttagtttttgtgttaatacatctttttctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgtttaaataactcaactctt 21353329  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 32912157 - 32912216
Alignment:
Q  46 tttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacac 106  Q
    ||||||| ||||||| ||||||||||||||||||||| | ||||| ||||| |||||||||    
T  32912157 tttctttataaatta-tgattgtcccaaaagttgtcaaccaaatggttgttcaaataacac 32912216  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 4098709 - 4098796
Alignment:
Q  26 ttttcgtgtcaataacta-tgtttctttgtaaattaatgattgtcccaaaagttgtcaccaaaatgattgtttaaataacacatctct 112  Q
    ||||||| |||||| ||| | |||||||||||||| || ||||||  | ||||||||| ||||||| ||||| |||||||||| ||||    
T  4098709 ttttcgtatcaatatctactttttctttgtaaatttattattgtctaataagttgtcaacaaaatggttgttaaaataacacagctct 4098796  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 27546170 - 27546221
Alignment:
Q  32 tgtcaataactatgtttctttgtaaattaatgattgtcccaaaagttgtcac 83  Q
    |||||||| |||| |||||||||| ||| ||||||||| |||||||||||||    
T  27546170 tgtcaatatctatttttctttgtacatttatgattgtctcaaaagttgtcac 27546221  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 41745353 - 41745267
Alignment:
Q  223 agagataaaaggaaaacaagttatactgatgaaccaaataaacccataaccatttccatatcctcgtgctggatgatagaaactcaaa 310  Q
    |||||||| |||||| | ||||||||||||||||| |||||| | ||||||||    ||||||| ||| ||||||||| |||||||||    
T  41745353 agagataacaggaaagcgagttatactgatgaacc-aataaaacaataaccatgataatatccttgtgttggatgatataaactcaaa 41745267  T

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