View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1578-Insertion-13 (Length: 172)

Name: NF1578-Insertion-13
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1578-Insertion-13
NF1578-Insertion-13
[»] chr4 (3 HSPs)
chr4 (8-169)||(9944088-9944249)
chr4 (9-65)||(19695118-19695174)
chr4 (9-65)||(19705703-19705759)
[»] chr8 (2 HSPs)
chr8 (9-135)||(29921678-29921804)
chr8 (8-65)||(3343453-3343510)
[»] scaffold1171 (1 HSPs)
scaffold1171 (9-65)||(184-240)
[»] chr1 (1 HSPs)
chr1 (9-65)||(20590416-20590472)
[»] scaffold0250 (1 HSPs)
scaffold0250 (8-65)||(25244-25301)
[»] chr2 (1 HSPs)
chr2 (8-65)||(17099120-17099177)
[»] chr3 (2 HSPs)
chr3 (9-65)||(14767073-14767129)
chr3 (9-65)||(11332679-11332735)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 5e-70; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 9944249 - 9944088
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttaca 107  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||    
T  9944249 aatatttctcatctattccaccatgaatcagttccgaagccttattcttagccctacaaagcttaaagtgactcaacataactccccacttatttttaca 9944150  T
Q  108 agttgattgcaattccttaagtttcataccagatgagagtttcagaattggtatcagtttct 169  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  9944149 agttgattgcaattccttaagtttcataccagatgagtgtttcagaattggtaccagtttct 9944088  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 19695174 - 19695118
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||| ||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  19695174 atattgttcatctatggcaccatggataagttctaaagccttcttcttagccctata 19695118  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 19705759 - 19705703
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||| ||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  19705759 atattgttcatctatggcaccatggataagttctaaagccttcttcttagccctata 19705703  T

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Target: chr8 (Bit Score: 55; Significance: 7e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 29921678 - 29921804
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctataaatcttaatgtgactcaacataactccccacttatttttacaa 108  Q
    |||||||||||||||| ||||||| || ||||  |||||||| |||||||||||||| |||| |  |   |||||||| ||||||||||||| |||||||    
T  29921678 atattgctcatctattgcaccatggataagttttaaagccttcttcttagccctatatatctgatagcttctcaacatcactccccacttatctttacaa 29921777  T
Q  109 gttgattgcaattccttaagtttcata 135  Q
    | || ||||||| ||||||||||||||    
T  29921778 gatgcttgcaatcccttaagtttcata 29921804  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 3343453 - 3343510
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  3343453 aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata 3343510  T

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Target: scaffold1171 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 184 - 240
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||    
T  184 atattgctcatctatgccaccatggataagttctaaagccttcttcttagccctata 240  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 20590416 - 20590472
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||    
T  20590416 atattgctcatctatgccaccatggataagttctaaagccttcttcttagccctata 20590472  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 25244 - 25301
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  25244 aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata 25301  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 17099177 - 17099120
Alignment:
Q  8 aatattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    ||||||||||||||||  ||||||| || ||||| |||||||| ||||||||||||||    
T  17099177 aatattgctcatctatggcaccatggataagttctaaagccttcttcttagccctata 17099120  T

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Target: chr3 (Bit Score: 33; Significance: 0.0000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 14767129 - 14767073
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||||||||||||  ||||||| || |||||||||||||| ||||||| ||||||    
T  14767129 atattgctcatctatggcaccatggataagttccaaagccttcttcttagtcctata 14767073  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 11332679 - 11332735
Alignment:
Q  9 atattgctcatctattccaccatgaatcagttccaaagccttattcttagccctata 65  Q
    |||||||||||||||  ||||||| || || |||||| |||| ||||||||||||||    
T  11332679 atattgctcatctatggcaccatgtataagctccaaatccttcttcttagccctata 11332735  T

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