View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1578-Insertion-14 (Length: 560)
Name: NF1578-Insertion-14
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1578-Insertion-14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 2486234 - 2485679
Alignment:
| Q |
8 |
gttattactacaaatgaaccggaaactaaacaaattcgcatgcatgtatcatggaaaataggaaaataaaaggagaatgaatcgataatatacctgagat |
107 |
Q |
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| T |
2486234 |
gttattactacaaatgtaccggaaactaaacaaattcgcatgcatgtatgatggaaaataggaaaataaaaggagaatgaatcgataatatacctgagat |
2486135 |
T |
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| Q |
108 |
aataagggaaattatcaaaggtgacattgctttctctaccatcaacaatgagtcgtagcatttcgttttcaatcttgtcaggagtgagggcgttggagga |
207 |
Q |
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| T |
2486134 |
aataagggaaattatcaaaggtgacattgctttctctaccatcaacaacgagtcgtagcatttcgttttcaatcttgtcaggagtgagggcgttggagga |
2486035 |
T |
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| Q |
208 |
ggag---taagtattaggtttaaacatggtttgtccagaagccaagccaaggccaactccaacaccaacgctaagcgcggctgatatcaacattcctttc |
304 |
Q |
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| T |
2486034 |
ggaggagtaagtattaggtttaaacatggtttgtccagaagccaagccaaggccaactccaacaccaacgctaagcgcggctgatatcaacattcctttc |
2485935 |
T |
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| Q |
305 |
tgttccatttttaatttactttcaaaaaattaaacgtaaaaactgaatgaatatgtatccaatacgtgaatgttgaaaattttagagagatatggaagaa |
404 |
Q |
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| T |
2485934 |
tgttccatttttaatttactttcaaaaaattaaccgtaaaaactgaatgaatatgtatccaatacgtgaatgttgaaaattttagagagatatggaagaa |
2485835 |
T |
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| Q |
405 |
ggatcaatcatgtcctttgttttcatggtagtaaggtaatctgtgttttgatttctggaaatggtgatcttatgagagttcccgctatttctggtgcggt |
504 |
Q |
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| T |
2485834 |
ggatcaatcatgtcctttgttttcatggtattaaggtaatgtgtgttttgatttctggaaatggtgatcttatgagagttcccgctatttctggtgcggt |
2485735 |
T |
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| Q |
505 |
ctttattttcttctcttattcaagtttaaaggatggagactagtgctgactcatgc |
560 |
Q |
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| T |
2485734 |
ctttattttcttctcttattcaagtttaaatgatggagactagtgctgactcatgc |
2485679 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 41595036 - 41595088
Alignment:
| Q |
104 |
agataataagggaaattatcaaaggtgacattgctttctctaccatcaacaat |
156 |
Q |
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| T |
41595036 |
agataataagggaatttatcaaaagtaacgttgctttctctgccatcaacaat |
41595088 |
T |
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