View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1578-Insertion-7 (Length: 1089)

Name: NF1578-Insertion-7
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1578-Insertion-7
NF1578-Insertion-7
[»] chr3 (11 HSPs)
chr3 (140-1079)||(26283074-26283998)
chr3 (8-63)||(40514315-40514370)
chr3 (872-928)||(16675904-16675960)
chr3 (8-73)||(20857435-20857498)
chr3 (872-945)||(47683897-47683970)
chr3 (8-67)||(34828884-34828943)
chr3 (875-945)||(43460495-43460565)
chr3 (875-945)||(54233395-54233465)
chr3 (493-553)||(2133603-2133664)
chr3 (500-553)||(35420499-35420552)
chr3 (867-908)||(44080664-44080705)
[»] chr1 (11 HSPs)
chr1 (8-73)||(13868413-13868479)
chr1 (8-63)||(45794907-45794962)
chr1 (8-73)||(34352500-34352566)
chr1 (8-63)||(33150470-33150525)
chr1 (8-73)||(5808237-5808303)
chr1 (8-69)||(26510968-26511029)
chr1 (872-927)||(37619984-37620039)
chr1 (8-63)||(52028160-52028215)
chr1 (872-945)||(25586558-25586631)
chr1 (872-943)||(7420743-7420814)
chr1 (875-945)||(42843238-42843308)
[»] chr7 (14 HSPs)
chr7 (158-289)||(36783487-36783618)
chr7 (8-63)||(35213109-35213164)
chr7 (17-72)||(36031566-36031622)
chr7 (869-945)||(31467711-31467787)
chr7 (8-63)||(38489087-38489142)
chr7 (8-73)||(26855190-26855255)
chr7 (8-63)||(4107010-4107065)
chr7 (875-945)||(37385127-37385197)
chr7 (873-945)||(30864309-30864381)
chr7 (211-294)||(36783626-36783709)
chr7 (500-553)||(5418304-5418358)
chr7 (873-915)||(26018044-26018086)
chr7 (872-945)||(32315933-32316006)
chr7 (872-945)||(42431830-42431903)
[»] chr6 (4 HSPs)
chr6 (8-63)||(14320730-14320785)
chr6 (8-73)||(14687605-14687670)
chr6 (875-945)||(1803976-1804046)
chr6 (873-915)||(7636453-7636495)
[»] chr4 (13 HSPs)
chr4 (8-63)||(20543561-20543616)
chr4 (8-73)||(43517328-43517394)
chr4 (872-945)||(34259933-34260006)
chr4 (872-921)||(49371069-49371118)
chr4 (873-945)||(3223096-3223168)
chr4 (893-945)||(25936347-25936399)
chr4 (872-928)||(46282385-46282441)
chr4 (502-557)||(50471753-50471809)
chr4 (872-943)||(6126962-6127033)
chr4 (8-62)||(6874688-6874743)
chr4 (500-553)||(25575054-25575108)
chr4 (502-555)||(49738550-49738604)
chr4 (872-945)||(33574965-33575038)
[»] chr5 (12 HSPs)
chr5 (8-63)||(35100982-35101037)
chr5 (180-306)||(37083674-37083803)
chr5 (8-63)||(979697-979752)
chr5 (8-73)||(5100235-5100300)
chr5 (869-915)||(18658212-18658258)
chr5 (872-945)||(22203814-22203887)
chr5 (8-63)||(21368525-21368579)
chr5 (875-945)||(11432732-11432802)
chr5 (872-945)||(8955549-8955622)
chr5 (872-921)||(10059697-10059746)
chr5 (501-553)||(2090643-2090696)
chr5 (8-69)||(18718562-18718623)
[»] chr2 (11 HSPs)
chr2 (8-63)||(32623836-32623891)
chr2 (8-73)||(144622-144687)
chr2 (8-73)||(11195827-11195893)
chr2 (872-945)||(6742301-6742374)
chr2 (872-928)||(42607426-42607482)
chr2 (872-945)||(44059614-44059687)
chr2 (872-920)||(28508482-28508530)
chr2 (873-945)||(36582363-36582435)
chr2 (873-945)||(37966463-37966535)
chr2 (500-554)||(33393338-33393393)
chr2 (875-944)||(38572047-38572116)
[»] chr8 (12 HSPs)
chr8 (873-936)||(20284823-20284886)
chr8 (873-936)||(21071452-21071515)
chr8 (872-945)||(33511708-33511781)
chr8 (873-921)||(36637799-36637847)
chr8 (872-915)||(36805149-36805192)
chr8 (875-945)||(2597054-2597124)
chr8 (8-58)||(6244624-6244674)
chr8 (8-73)||(9510271-9510337)
chr8 (873-945)||(30927823-30927895)
chr8 (500-553)||(32276915-32276969)
chr8 (872-945)||(3206354-3206427)
chr8 (875-936)||(37343493-37343554)
[»] scaffold0032 (1 HSPs)
scaffold0032 (872-945)||(35860-35933)
[»] scaffold0003 (1 HSPs)
scaffold0003 (873-945)||(88915-88987)
[»] scaffold0570 (1 HSPs)
scaffold0570 (500-553)||(946-1000)


Alignment Details
Target: chr3 (Bit Score: 587; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 140 - 1079
Target Start/End: Original strand, 26283074 - 26283998
Alignment:
Q  140 cttttacttaaatgtaattttaaaacaacacaaagaaaataaaaacaagtgataatcttttgtagatctaaagatatagtaaatgtcaaaataagacaaa 239  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26283074 cttttacttaaatgtaattt-aaaacaacacagagaaaataaaaacaagtgataatgttttgtagatctaaagatatagtaaatgtcaaaataagacaaa 26283172  T
Q  240 acacatctatgaaataagtgaagatattttgatttggttgtttctattaatttttgaaaaataaacttatatttggagtgattaaatatatattactgta 339  Q
    ||| ||||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||  |||| | |||||||||||||||||||||||||    
T  26283173 acaaatctatgaaataagtgatgatcttttgatttgattgtttctattaagttttgaaaaataaac--atatctagagtgattaaatatatattactgta 26283270  T
Q  340 gtagctaaaggtaaaacatacttaattattcaaatnnnnnnn--ttgaggtggccaaagctaccacattgatatgggtagcaacacccttggacactaat 437  Q
    |||||||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  26283271 gtagctaaagctaaaacatacttaattattcaaataaaaaaagtttgaggtggccaaagctaccacattgctatgggtagctacacccttggacactaat 26283370  T
Q  438 taagatgcacacgcaatgccaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaaccaagctttatcccactctatggggt 537  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  || |||    
T  26283371 taagatgcacgagcaatgctaaataaagaatacaaaatgaaaaacctatttttgttttgtttcaacaacaacaaccaagctttatcttactcagtgaggt 26283470  T
Q  538 cgttacatggatcaaacaaccaagccnnnnnnngttttgttt-aagggtgattatatttaaacatcttaatttctcaccatacattttaacatctcaatt 636  Q
    || |||||| ||||||||||||||||       ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||    
T  26283471 cgctacatg-atcaaacaaccaagcctttttttgttttgtttcaagggtgattatatttagacattttaatttctcaccatacattttaacatctcattt 26283569  T
Q  637 tctttatccgtcttcatgtcacactaccaaaatctcacattacacactttctatttaatccaggtgtaaatgatatgtatgaatatccggagatgatttt 736  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26283570 tctttatccgtcttcatgtcacactaccaacatatcacattacacattttctatttaatccaggtgtaaatgatatgtatgaatatccggagataatttt 26283669  T
Q  737 acttagtttaaagggtgattaaaaaggatgataatgaataagaaaaatgtttagtgtacaccccaatggtgtatacatcccaatatgtgcaccttgagat 836  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26283670 ccttagtttaaagggtgattaaaaaggatgataatgaataagaaaaatgtttagtgtacaccccaatggtgtatacatcccaatatgtgctccttgagat 26283769  T
Q  837 agaaagagatgagagagagcggtgtgaatcacgattaatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttat 936  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||| ||||    
T  26283770 agaaagagatgagagagaatggtgtgaatcacgattaatgatatttgtacaatcatctgatgacaactcttgggacaatcttcttattctctttttttat 26283869  T
Q  937 gggtcaaaacatataaaggagaaaacaatataaagataaaagggatggatgagagtaacaac-taatgtgagtacgaagatagaaacattgtccaaattg 1035  Q
     | |||               |||||||||||||||||||| |||  | ||||||||||||| |||| |||||||| |||||||||||||||||||||      
T  26283870 tgatca---------------aaaacaatataaagataaaaaggagaggtgagagtaacaacataatatgagtacg-agatagaaacattgtccaaatat 26283953  T
Q  1036 tgtcactaaataattgta-caatataattcatcgtgaatcataga 1079  Q
    ||||||||||||||||||  |||||| || |||||||||||||||    
T  26283954 tgtcactaaataattgtataaatatagtttatcgtgaatcataga 26283998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 40514370 - 40514315
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40514370 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 40514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 872 - 928
Target Start/End: Original strand, 16675904 - 16675960
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctct 928  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  16675904 taatgatatttgtacaattatttgatgataacttttgtgacaaccttctttttctct 16675960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 20857435 - 20857498
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||| | |||||||||||||    
T  20857435 aaaaatgggatatattaaca---gcagtgaaacacctaagtacaagatgtactaaaagtgtcacccc 20857498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 872 - 945
Target Start/End: Complemental strand, 47683970 - 47683897
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    ||||||||||||||||| |||||  ||| |||||||| |||||||||||  |||||| ||||||| ||||||||    
T  47683970 taatgatatttgtacaaccattttgtgacaacttttgagacaaccttctctttctctcttcttattggtcaaaa 47683897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 34828884 - 34828943
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaagtgt 67  Q
    |||||||  ||| ||||||| ||| |||||| ||||||||||||||||||| ||||||||    
T  34828884 aaaaatgtaataaattaacatcggtagtgaaccacctaagtacaagatgtaataaagtgt 34828943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 875 - 945
Target Start/End: Complemental strand, 43460565 - 43460495
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||| | |||  ||| ||||||||||||| ||||| | |||||| ||||||| ||||||||    
T  43460565 tgatatttgtacaacctttttgtgacaacttttgggacagccttcattttctctcttcttattggtcaaaa 43460495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 875 - 945
Target Start/End: Original strand, 54233395 - 54233465
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||  || ||||||| |||||| | ||||||||| || |||||| ||||||| ||||||||    
T  54233395 tgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattggtcaaaa 54233465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 493 - 553
Target Start/End: Original strand, 2133603 - 2133664
Alignment:
Q  493 tttgtttcaacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 553  Q
    |||||| |||||||||||||||||| ||||||||||   ||||||||  |||||||||||||    
T  2133603 tttgttacaacaacaacaaccaagccttatcccactaagtggggtcgagtacatggatcaaa 2133664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 35420552 - 35420499
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtcgttacatggatcaaa 553  Q
    |||||| ||||||||||| ||||||||||  ||||||||| |||||||| ||||    
T  35420552 caacaataacaaccaagccttatcccactaaatggggtcgctacatggaccaaa 35420499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 867 - 908
Target Start/End: Original strand, 44080664 - 44080705
Alignment:
Q  867 acgattaatgatatttgtacaatcatttgatgataacttttg 908  Q
    |||||||||||||||||||||||||||| || |||| |||||    
T  44080664 acgattaatgatatttgtacaatcatttaattataatttttg 44080705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 5e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 13868479 - 13868413
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtatt-aaagtgtcacccc 73  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13868479 aaaaatgagatatattaacaacggcagtgaaacacctaagtacaagatgtattaaaagtgtcacccc 13868413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 45794907 - 45794962
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45794907 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 45794962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 34352500 - 34352566
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  34352500 aaaaatggaatatatcaacaacggcagtgaaacacctaagtacaagatgtactaaaagtgtcacccc 34352566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 33150470 - 33150525
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  33150470 aaaaatggaatatattaacaacggcagtgaaacacctaagtacaaaatgtagtaaa 33150525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 5808237 - 5808303
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||    
T  5808237 aaaaatggaatatattaacaacggcagtgagtcacctaagtacaagatgtactaaaagtgtcacccc 5808303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 26511029 - 26510968
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaagtgtca 69  Q
    |||||||| ||||||||| ||||| |||||| ||||||||||||||||||| ||||||||||    
T  26511029 aaaaatggaatatattaataacggtagtgaaccacctaagtacaagatgtactaaagtgtca 26510968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 872 - 927
Target Start/End: Original strand, 37619984 - 37620039
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctc 927  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||| ||||||||    
T  37619984 taatgatatttacacaatcattttatgataacttttgggacaacctttttattctc 37620039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 52028160 - 52028215
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| |||||||||| || ||||||||||||||||||| |||||||||||||    
T  52028160 aaaaatggaatatattaacgacagcagtgaaacacctaagtataagatgtattaaa 52028215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 872 - 945
Target Start/End: Original strand, 25586558 - 25586631
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||| | || | |||| ||||||| ||||||||    
T  25586558 taatgatatttgtacaatcatttgatgataatttttttgacaaccgttttttcctctcttcttattggtcaaaa 25586631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 872 - 943
Target Start/End: Complemental strand, 7420814 - 7420743
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaa 943  Q
    |||||||||||||||||| ||||  ||| ||||||| ||||||| || || |||||||||||||| ||||||    
T  7420814 taatgatatttgtacaattatttcgtgacaacttttaggacaacttttttcttctcttttcttattggtcaa 7420743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 875 - 945
Target Start/End: Original strand, 42843238 - 42843308
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||  || |||||||||| ||| | ||||||||| || |||||| ||||||| ||||||||    
T  42843238 tgatatttgtacatccaattgatgataattttggtgacaaccttgtttttctctcttcttattggtcaaaa 42843308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 7e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 158 - 289
Target Start/End: Original strand, 36783487 - 36783618
Alignment:
Q  158 tttaaaacaacacaaagaaaataaaaacaagtgataatcttttgtag-atctaaagatatagtaaatgtcaaaataagacaaaacacatctatgaaataa 256  Q
    |||||||| |||||  |||||||||| | |||||||||||||| ||| | |||||||||||||||  |||||||||||| |||| | |||||||||||||    
T  36783487 tttaaaacgacacattgaaaataaaa-ctagtgataatcttttctagtagctaaagatatagtaagggtcaaaataagaaaaaataaatctatgaaataa 36783585  T
Q  257 gtgaagatattttgatttggttgtttctattaa 289  Q
    ||||  || ||||||||||||| |||| |||||    
T  36783586 gtgataatcttttgatttggttatttccattaa 36783618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 35213109 - 35213164
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35213109 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 35213164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 36031566 - 36031622
Alignment:
Q  17 atatattaacaacggcagtgaaacacctaagtacaagatgtatt-aaagtgtcaccc 72  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36031566 atatattaacaacggcagtgaaacacctaagtacaagatgtattaaaagtgtcaccc 36031622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 869 - 945
Target Start/End: Complemental strand, 31467787 - 31467711
Alignment:
Q  869 gattaatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||||||||| |||||||| |||||||| || ||| ||| | |||||||||||||| ||| ||||    
T  31467787 gattaatgatatttgtacaatcgtttgatgacaacttttgtgataactttcattttctcttttcttattggttaaaa 31467711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 38489142 - 38489087
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||    
T  38489142 aaaaatggtatataataacaacggcagtgaaacaccttaatacaagatgtattaaa 38489087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 26855190 - 26855255
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||    
T  26855190 aaaaatggaatatattaacagcggcagtg-aacacctaagtacaagatgtactaaaagtgtcacccc 26855255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 4107065 - 4107010
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||| | ||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  4107065 aaaaattgaatatattaacaacggcagtgaaacatctaagtataagatgtactaaa 4107010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 875 - 945
Target Start/End: Original strand, 37385127 - 37385197
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||  || ||||||| |||||| | ||||||||| || |||||||||||||| ||||||||    
T  37385127 tgatatttgtacatccaattgatgacaactttggtgacaaccttgttcttctcttttcttattggtcaaaa 37385197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 945
Target Start/End: Original strand, 30864309 - 30864381
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||  ||||  |||| |||||| | ||||||||| || |||||||||||||| ||||||||    
T  30864309 aatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctcttttcttattggtcaaaa 30864381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 294
Target Start/End: Original strand, 36783626 - 36783709
Alignment:
Q  211 agatatagtaaatgtcaaaataagacaaaacacatctatgaaataagtgaagatattttgatttggttgtttctattaattttt 294  Q
    |||||||||||  || ||||||||| |||| | |||||||||||||||||  ||  |||||||||||| |||| ||||| ||||    
T  36783626 agatatagtaagggttaaaataagataaaataaatctatgaaataagtgataatcctttgatttggttatttccattaactttt 36783709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 5418358 - 5418304
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaa 553  Q
    |||||||||||||||||| ||||||||||  |||||||||  |||||||||||||    
T  5418358 caacaacaacaaccaagccttatcccactaaatggggtcgactacatggatcaaa 5418304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 873 - 915
Target Start/End: Original strand, 26018044 - 26018086
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaac 915  Q
    |||||||||||||||||||||| || |||||||||| ||||||    
T  26018044 aatgatatttgtacaatcattttataataacttttgtgacaac 26018086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 872 - 945
Target Start/End: Complemental strand, 32316006 - 32315933
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||| ||||  |||||| || |||||||| |||||| || || |||||| ||||||| ||||||||    
T  32316006 taatgatatttgaacaactatttgacgacaacttttgtgacaacattgtttttctctcttcttattggtcaaaa 32315933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 872 - 945
Target Start/End: Complemental strand, 42431903 - 42431830
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    ||||||||||||||||  ||||  |||| |||||| | ||||||||| || |||||| ||||||| ||||||||    
T  42431903 taatgatatttgtacatccattccatgacaactttagtgacaaccttgtttttctctcttcttattggtcaaaa 42431830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 14320785 - 14320730
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14320785 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 14320730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 14687670 - 14687605
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa-gtgtcacccc 73  Q
    |||||||| |||||||||||||||||||| ||  ||||||||||||||||| |||| ||||||||||    
T  14687670 aaaaatggaatatattaacaacggcagtg-aatgcctaagtacaagatgtactaaaggtgtcacccc 14687605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 875 - 945
Target Start/End: Complemental strand, 1804046 - 1803976
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||  || ||||||| |||||| | ||||||||| || |||||| ||||||| ||||||||    
T  1804046 tgatatttgtacatccaattgatgacaactttggtgacaaccttgtttttctctcttcttattggtcaaaa 1803976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 873 - 915
Target Start/End: Complemental strand, 7636495 - 7636453
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaac 915  Q
    |||||||||||||||||||||| || ||||||||| |||||||    
T  7636495 aatgatatttgtacaatcattttataataactttttggacaac 7636453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 7e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 20543561 - 20543616
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  20543561 aaaaatggaatatattaacaacggcagtgaaacacctaagtacaagatgtactaaa 20543616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 43517394 - 43517328
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  43517394 aaaaatggaatatattaacaacagcagtgaaacacctaagtacaagatgtactaaaagtgtcacccc 43517328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 872 - 945
Target Start/End: Complemental strand, 34260006 - 34259933
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    ||||||||||||||||| |||||| ||| |||||||| ||||| |||||| |||||| ||||||| ||||||||    
T  34260006 taatgatatttgtacaaccatttggtgacaacttttgtgacaaacttctttttctctcttcttattggtcaaaa 34259933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 872 - 921
Target Start/End: Complemental strand, 49371118 - 49371069
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttctt 921  Q
    ||||||||||||||||| ||| | |||| |||||||||||||||||||||    
T  49371118 taatgatatttgtacaaccatgttatgacaacttttgggacaaccttctt 49371069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 945
Target Start/End: Complemental strand, 3223168 - 3223096
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||  ||||  |||| |||||| | |||||||||||| |||||| ||||||| ||||||||    
T  3223168 aatgatatttgtacatccattccatgaaaactttagtgacaaccttctttttctctcttcttattggtcaaaa 3223096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 893 - 945
Target Start/End: Complemental strand, 25936399 - 25936347
Alignment:
Q  893 ttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||| ||||| ||| || |||||||||||||| ||||||||    
T  25936399 ttgatgataacttttgtgacaatcttgtttttctcttttcttattggtcaaaa 25936347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 872 - 928
Target Start/End: Complemental strand, 46282441 - 46282385
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctct 928  Q
    |||||||||||||||| |||||||||||||| ||||| |||||| || || ||||||    
T  46282441 taatgatatttgtacactcatttgatgataatttttgtgacaactttatttttctct 46282385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 502 - 557
Target Start/End: Complemental strand, 50471809 - 50471753
Alignment:
Q  502 acaacaacaaccaagctttatcccactctatggggtcg-ttacatggatcaaacaac 557  Q
    |||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||    
T  50471809 acaacaacaaccaagcgttatcccactaagtggggtcgattacatggatcaaacaac 50471753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 872 - 943
Target Start/End: Complemental strand, 6127033 - 6126962
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaa 943  Q
    |||||||||||| |||| | ||| |||| |||||||| |||||||| | | |||||||||||||| ||||||    
T  6127033 taatgatatttgaacaaccttttaatgacaacttttgtgacaacctaccttttctcttttcttattggtcaa 6126962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 6874743 - 6874688
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaaca-cctaagtacaagatgtattaa 62  Q
    |||||||| |||||||||||| ||| |||||||  |||||||||||||||||||||    
T  6874743 aaaaatggtatatattaacaaaggcggtgaaacctcctaagtacaagatgtattaa 6874688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 25575108 - 25575054
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 553  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  25575108 caacaacaacaaccaagccttatcccactaaatggggtctgctacatggatcaaa 25575054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 502 - 555
Target Start/End: Original strand, 49738550 - 49738604
Alignment:
Q  502 acaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaaca 555  Q
    |||||||||||||||| ||||||||||  |||||||| | |||||||||||||||    
T  49738550 acaacaacaaccaagccttatcccactaaatggggtcggctacatggatcaaaca 49738604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 872 - 945
Target Start/End: Original strand, 33574965 - 33575038
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||||| ||||   || |||||||| ||||  |||||| ||||||||| |||| ||||||||    
T  33574965 taatgatatttgtacaattatttcgggacaacttttgtgacactcttctttttctctttttttattggtcaaaa 33575038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 35100982 - 35101037
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  35100982 aaaaatggaatatattaacaacggcggtgaaacacctaagtacaagatgtactaaa 35101037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 180 - 306
Target Start/End: Complemental strand, 37083803 - 37083674
Alignment:
Q  180 aaaaacaagtgataatcttttgtag-atctaaaga--tatagtaaatgtcaaaataagacaaaacacatctatgaaataagtgaagatattttgatttgg 276  Q
    ||||| ||||||||||||||||||| | | ||| |  ||||||||  ||||||||| ||||||| | ||| |||||||||||||  |  |||||||||||    
T  37083803 aaaaaaaagtgataatcttttgtagtagcaaaaaacatatagtaagggtcaaaatatgacaaaataaatcaatgaaataagtgataaccttttgatttgg 37083704  T
Q  277 ttgtttctattaatttttgaaaaataaact 306  Q
    || |||||||||| |||||| |||||||||    
T  37083703 ttatttctattaaattttgacaaataaact 37083674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 979752 - 979697
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| |||||||||||| |||||||||||| |||||||||||||||| ||||    
T  979752 aaaaatggaatatattaacaatggcagtgaaacatctaagtacaagatgtactaaa 979697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 5100300 - 5100235
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa-gtgtcacccc 73  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||    
T  5100300 aaaaatggaatatattaacaacggcagtg-aacgcctaagtacaagatgtactaaaggtgtcacccc 5100235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 869 - 915
Target Start/End: Original strand, 18658212 - 18658258
Alignment:
Q  869 gattaatgatatttgtacaatcatttgatgataacttttgggacaac 915  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||    
T  18658212 gattaatgatatttgtacaattatttgatgataacttttgtgacaac 18658258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 872 - 945
Target Start/End: Complemental strand, 22203887 - 22203814
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||| |||||||||||| ||||||||| ||| ||||| |||||||||| | |||||| ||||||| ||||||||    
T  22203887 taataatatttgtacaaccatttgatggtaatttttgtgacaaccttccttttctctcttcttattggtcaaaa 22203814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 21368579 - 21368525
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||    
T  21368579 aaaaatggaatatattaacaacggcagcg-aacacctaagtacaagatgtactaaa 21368525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 875 - 945
Target Start/End: Complemental strand, 11432802 - 11432732
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    ||||||||| |||||||||| |||| ||||| |||||||||||| || |||||| || |||| ||||||||    
T  11432802 tgatatttgaacaatcatttcatgacaacttctgggacaaccttgttgttctctcttgttattggtcaaaa 11432732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 872 - 945
Target Start/End: Original strand, 8955549 - 8955622
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||| |||| ||||| ||||||||| ||||||||||||| || |||| |||| |||| ||| ||||    
T  8955549 taatgatatttgaacaaccatttcatgataactcttgggacaaccttgttgttcttttttgttattggttaaaa 8955622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 872 - 921
Target Start/End: Complemental strand, 10059746 - 10059697
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttctt 921  Q
    |||||||||||||||||| ||||||| |||||||||| | ||||||||||    
T  10059746 taatgatatttgtacaattatttgataataacttttgtggcaaccttctt 10059697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 501 - 553
Target Start/End: Complemental strand, 2090696 - 2090643
Alignment:
Q  501 aacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 553  Q
    |||||||||||| |||| ||||||||||| |||||||| | |||||||||||||    
T  2090696 aacaacaacaacaaagccttatcccactcaatggggtcgggtacatggatcaaa 2090643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 18718623 - 18718562
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaagtgtca 69  Q
    |||||||| ||| ||||||| | | |||||| | ||||||||||||||||| ||||||||||    
T  18718623 aaaaatggaataaattaacatcagtagtgaaccgcctaagtacaagatgtactaaagtgtca 18718562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 32623836 - 32623891
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgtattaaa 63  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  32623836 aaaaatggaatatattaacaacggcagtaaaacacctaagtacaagatgtactaaa 32623891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 144687 - 144622
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| |||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||    
T  144687 aaaaatggaatatattaacaacggcagtg-aacatctaagtacaagatgtactaaaagtgtcacccc 144622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 11195827 - 11195893
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||| ||||||||||||||| || |||||||||||||| |||||||| | |||||||||||||    
T  11195827 aaaaatggaatatattaacaacggtagggaaacacctaagtataagatgtactaaaagtgtcacccc 11195893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 872 - 945
Target Start/End: Original strand, 6742301 - 6742374
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||| ||||||||||||||| ||| |||||||| ||||| ||||||  ||||| ||||||| ||||||||    
T  6742301 taatgataattgtacaatcatttgttgacaacttttgtgacaatcttctttctctctcttcttattggtcaaaa 6742374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 872 - 928
Target Start/End: Original strand, 42607426 - 42607482
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctct 928  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||||| | ||||||    
T  42607426 taatgatatttgtacaatcatatgatgacaacttttgtgacaaccttccttttctct 42607482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 872 - 945
Target Start/End: Original strand, 44059614 - 44059687
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||| ||||||| |||| ||||||||||||||||||| |||||||| ||| |||||| || | || ||||||||    
T  44059614 taattatatttgaacaaccatttgatgataacttttgtgacaacctactttttctctcttttaattggtcaaaa 44059687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 872 - 920
Target Start/End: Original strand, 28508482 - 28508530
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttct 920  Q
    ||||||||||||||||| |||||  ||| ||||||||||||||||||||    
T  28508482 taatgatatttgtacaaccattttgtgacaacttttgggacaaccttct 28508530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 945
Target Start/End: Complemental strand, 36582435 - 36582363
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||  |||||||||| |||||| | ||||||||| || |||||| |||| || ||||||||    
T  36582435 aatgatatttgtacatccatttgatgacaactttggtgacaaccttgtttttctctattctaattggtcaaaa 36582363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 945
Target Start/End: Complemental strand, 37966535 - 37966463
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||  ||||| |||| |||||| | ||||||||| || |||||| ||||||| ||||||||    
T  37966535 aatgatatttgtacatccatttcatgacaactttagtgacaaccttgtttttctctcttcttattggtcaaaa 37966463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 33393393 - 33393338
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaac 554  Q
    ||||||||||||||||||||||||||| |   ||||||| ||||||||||||||||    
T  33393393 caacaacaacaaccaagctttatcccagtaagtggggtcggttacatggatcaaac 33393338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 875 - 944
Target Start/End: Complemental strand, 38572116 - 38572047
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaa 944  Q
    ||||||||||||| ||| ||||| | |||||| | ||||||||| || |||||| ||||||| |||||||    
T  38572116 tgatatttgtacattcaattgataacaactttggtgacaaccttgtttttctctcttcttattggtcaaa 38572047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 873 - 936
Target Start/End: Complemental strand, 20284886 - 20284823
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttat 936  Q
    ||||||||||| |||| |||||||||| |||||||| |||||||||||| |||||| |||||||    
T  20284886 aatgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctctcttcttat 20284823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 873 - 936
Target Start/End: Complemental strand, 21071515 - 21071452
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttat 936  Q
    ||||||||||| |||| |||||||||| |||||||| |||||||||||| |||||| |||||||    
T  21071515 aatgatatttgaacaaccatttgatgacaacttttgtgacaaccttctttttctctcttcttat 21071452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 872 - 945
Target Start/End: Complemental strand, 33511781 - 33511708
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||||  ||||  ||| ||||||||||||||| ||||| |||||| ||||||| ||||||||    
T  33511781 taatgatatttgtacaactattttgtgaaaacttttgggacaacattcttcttctctcttcttattggtcaaaa 33511708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 873 - 921
Target Start/End: Complemental strand, 36637847 - 36637799
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttctt 921  Q
    ||||||||||||||||||||||| |||||| ||||| ||||||||||||    
T  36637847 aatgatatttgtacaatcatttggtgataatttttgtgacaaccttctt 36637799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 872 - 915
Target Start/End: Complemental strand, 36805192 - 36805149
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaac 915  Q
    |||||||||||||||||||||||||| |||||||||| ||||||    
T  36805192 taatgatatttgtacaatcatttgataataacttttgtgacaac 36805149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 875 - 945
Target Start/End: Original strand, 2597054 - 2597124
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    ||||||||||||| ||| ||||||| |||||| | ||||||||| || |||||| ||||||| ||||||||    
T  2597054 tgatatttgtacattcaattgatgacaactttggtgacaaccttgtttttctctcttcttattggtcaaaa 2597124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 6244624 - 6244674
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta 58  Q
    |||||| | |||||||||||||||||||||  |||||||||||||||||||    
T  6244624 aaaaattgaatatattaacaacggcagtgagtcacctaagtacaagatgta 6244674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 9510271 - 9510337
Alignment:
Q  8 aaaaatgggatatattaacaacggcagtgaaacacctaagtacaagatgta-ttaaagtgtcacccc 73  Q
    |||||||  |||||||||||||||||||||  ||||||| ||||||||||| | |||||||||||||    
T  9510271 aaaaatgaaatatattaacaacggcagtgagtcacctaaatacaagatgtactaaaagtgtcacccc 9510337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 945
Target Start/End: Original strand, 30927823 - 30927895
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||  ||||| |||| |||||| | ||||||||| || |||||| ||||||| ||||||||    
T  30927823 aatgatatttgtacatccatttcatgacaactttagtgacaaccttgtttttctctcttcttattggtcaaaa 30927895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 500 - 553
Target Start/End: Complemental strand, 32276969 - 32276915
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtcgt-tacatggatcaaa 553  Q
    |||||||||||||||||||||||||||||   |||| |||| |||||||||||||    
T  32276969 caacaacaacaaccaagctttatcccactaagtgggttcgtctacatggatcaaa 32276915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 872 - 945
Target Start/End: Original strand, 3206354 - 3206427
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||| |||| ||||||||||||| ||||| |||||| | ||| |||||| || | || ||||||||    
T  3206354 taatgatatttgaacaaccatttgatgataatttttgtgacaacatactttttctctcttttaattggtcaaaa 3206427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 875 - 936
Target Start/End: Complemental strand, 37343554 - 37343493
Alignment:
Q  875 tgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttat 936  Q
    |||||||||||||  || |||||||||||||| | |||||||||  | ||||||||||||||    
T  37343554 tgatatttgtacatccaattgatgataactttggtgacaaccttgattttctcttttcttat 37343493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 872 - 945
Target Start/End: Original strand, 35860 - 35933
Alignment:
Q  872 taatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    ||||||||||||||| | ||| | ||||||||||||||   ||||||||| |||||| ||||||| ||||||||    
T  35860 taatgatatttgtactaccatcttatgataacttttggcggaaccttcttcttctctcttcttataggtcaaaa 35933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 945
Target Start/End: Complemental strand, 88987 - 88915
Alignment:
Q  873 aatgatatttgtacaatcatttgatgataacttttgggacaaccttcttattctcttttcttatgggtcaaaa 945  Q
    |||||||||||||||  ||| | ||||||||||| | ||||||||| || || ||||||||||| ||||||||    
T  88987 aatgatatttgtacatccatctcatgataactttagtgacaaccttatttttttcttttcttattggtcaaaa 88915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 500 - 553
Target Start/End: Original strand, 946 - 1000
Alignment:
Q  500 caacaacaacaaccaagctttatcccactctatggggtc-gttacatggatcaaa 553  Q
    |||||||||||||||||| ||||||||||  |||||||| | |||||||||||||    
T  946 caacaacaacaaccaagccttatcccactaaatggggtcagctacatggatcaaa 1000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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