View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1578-Insertion-9 (Length: 675)
Name: NF1578-Insertion-9
Description: NF1578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1578-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 10094889 - 10095196
Alignment:
| Q |
7 |
agttagttgatatttgataactattcaaattcgcagaagattttatctagaaataatagaagaccgatgtaactaagaactttagacttgaagaaatttg |
106 |
Q |
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| T |
10094889 |
agttagttgatatttgataactattcaaattcgcagaagattttatctagaaataatagaaaaccgatgtaactaagaactttagacttgaagaaatttg |
10094988 |
T |
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| Q |
107 |
tcaccactaagattttgaacatactcaaattgaaactattgtaaagtaaagagaattcaatcatcattttagctaaaattttattgttagctttggtcaa |
206 |
Q |
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| T |
10094989 |
tcaccactaagattttgaacatactcaaattgaaactattgtaaagtaaagagaattcaatcatcattttagataaaattttattgttagctttggtcaa |
10095088 |
T |
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| Q |
207 |
aacattaatggacatggttgacaaaatgttcatcttaacataggaaagaacatcatatcgttccaaaaataattattatatttatagacatgtaaatact |
306 |
Q |
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| T |
10095089 |
aacattaatggacatagttgacaaaatgttcatcttaacataggaaagaacatcatatcgttccaaaaataattattatatttatagacatgtaaatact |
10095188 |
T |
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| Q |
307 |
agccggat |
314 |
Q |
| |
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||| |||| |
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| T |
10095189 |
agctggat |
10095196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 392 - 521
Target Start/End: Original strand, 10095226 - 10095355
Alignment:
| Q |
392 |
tcatatttatcaaatattctcaagacataactattctttaaacttatcttccacaaaacaaggatgaatttctacaaagttgaaaaattatatactcttg |
491 |
Q |
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| T |
10095226 |
tcatattgatcaaatattctcaagacataactattctttaaacttatcttccacaaaacaaagatgaatttctacaaagttgaaaaattatatactcttg |
10095325 |
T |
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| Q |
492 |
taacatgatatatttattattactgctgtg |
521 |
Q |
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| T |
10095326 |
taacatgatatatttattattactgctgtg |
10095355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 554 - 675
Target Start/End: Original strand, 10095391 - 10095512
Alignment:
| Q |
554 |
caattttgatgaaacctatgaccatgtttttgtgtttaacataggaagaatctacaaggtaacaaacaagcaacgttattttaagacaaaacaaaaagat |
653 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10095391 |
caattttgatgaaacctatgactatgtttatgtgtttaacataggaagaatctacaaggtaacaaacaaacaacgttattttaagacaaaacaaaaagat |
10095490 |
T |
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| Q |
654 |
taaaaacagagacatgttgata |
675 |
Q |
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| T |
10095491 |
taaaaacagagacatgttgata |
10095512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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