View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15780_high_11 (Length: 222)
Name: NF15780_high_11
Description: NF15780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15780_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 4016091 - 4016280
Alignment:
| Q |
17 |
atgaaatcctatgtgtatcatagtctgcttgtgtcctctcatgtgatgctgttagtaatgataccaatcagtcaaattatgattcactaccataaaccat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4016091 |
atgaaatcctatgtgtatcatagtctgcttgtgtcttctcatgtgatgttgttagtaatgataccaatcagtcaaattatgattcactaccatacaccat |
4016190 |
T |
|
| Q |
117 |
cttttggttcatttttctctttcttaatgggaggttgatatataaaaacattcaaatctctaaaagacattttcctctataggaagaaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4016191 |
cttttggttcatttttctctttcttaatgggaggttgatatataaaaacattcaaatctctaaaagacattttcctctataggaagaaaa |
4016280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 10219803 - 10219627
Alignment:
| Q |
26 |
tatgtgtatcatagtctgcttgtgtcctctcatgtgatgctgttagtaatgataccaatcagtcaaattatgattcactaccataaaccatct-tttggt |
124 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||| |||| |||| |||| | | ||||||||||||||||| ||| |||||||||||| ||| ||||| |
|
|
| T |
10219803 |
tatgtatatcatagtctagttgtgtcctctcatgcgatgttgttggtaaagttgccaatcagtcaaattattgttcgctaccataaaccttctccttggt |
10219704 |
T |
|
| Q |
125 |
tcatttttctctttcttaatgggaggttgatatataaaaacattcaaatctctaaaagacattttcctctataggaagaaaa |
206 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
10219703 |
tcatt----tctctcttaaagggaggttgatatataaaaaccttaaaatcttcaaaagacattttcc-atataggaagaaaa |
10219627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University