View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15780_high_2 (Length: 604)

Name: NF15780_high_2
Description: NF15780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15780_high_2
NF15780_high_2
[»] chr2 (15 HSPs)
chr2 (282-516)||(36681094-36681328)
chr2 (320-516)||(36682251-36682446)
chr2 (317-513)||(36404258-36404458)
chr2 (282-517)||(5062018-5062254)
chr2 (314-497)||(36403879-36404062)
chr2 (7-164)||(36681451-36681604)
chr2 (282-410)||(26379473-26379601)
chr2 (353-519)||(5060715-5060880)
chr2 (293-519)||(28240657-28240882)
chr2 (284-410)||(26380603-26380729)
chr2 (344-498)||(40783112-40783264)
chr2 (293-516)||(28239354-28239576)
chr2 (282-384)||(3833640-3833742)
chr2 (463-516)||(26271613-26271666)
chr2 (389-433)||(26273204-26273248)
[»] chr3 (6 HSPs)
chr3 (296-514)||(38525615-38525833)
chr3 (296-516)||(38524352-38524563)
chr3 (282-377)||(2766366-2766461)
chr3 (394-516)||(45511023-45511145)
chr3 (317-384)||(2753251-2753318)
chr3 (329-378)||(2767148-2767197)
[»] chr4 (10 HSPs)
chr4 (296-502)||(29213942-29214148)
chr4 (293-516)||(11384192-11384414)
chr4 (282-516)||(44491719-44491955)
chr4 (296-502)||(29214917-29215114)
chr4 (293-516)||(11385547-11385769)
chr4 (353-489)||(2274146-2274281)
chr4 (394-502)||(32133475-32133583)
chr4 (394-516)||(32134983-32135106)
chr4 (353-459)||(56338358-56338464)
chr4 (315-515)||(44493084-44493283)
[»] chr8 (6 HSPs)
chr8 (296-519)||(6132429-6132651)
chr8 (293-516)||(42127360-42127582)
chr8 (327-410)||(6133612-6133695)
chr8 (293-499)||(45015326-45015531)
chr8 (363-516)||(42128785-42128938)
chr8 (389-525)||(43711577-43711713)
[»] chr1 (4 HSPs)
chr1 (282-458)||(48571690-48571864)
chr1 (293-348)||(13324512-13324567)
chr1 (315-412)||(13325383-13325478)
chr1 (317-384)||(48677945-48678012)
[»] scaffold0912 (1 HSPs)
scaffold0912 (314-519)||(1594-1798)
[»] chr6 (3 HSPs)
chr6 (282-519)||(22970088-22970324)
chr6 (282-519)||(23818070-23818306)
chr6 (422-497)||(20117783-20117858)
[»] chr7 (2 HSPs)
chr7 (390-489)||(38320542-38320642)
chr7 (389-516)||(18852855-18852983)
[»] scaffold1425 (1 HSPs)
scaffold1425 (282-358)||(1303-1379)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 282 - 516
Target Start/End: Complemental strand, 36681328 - 36681094
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36681328 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggagaaagatgaatgttaacatt 36681229  T
Q  382 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 481  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||    
T  36681228 tttgaacaaaagttaacataatggatttatttgactgacggaggaaacttatgggacaaaattgaaacgaaaattaattgtgggaccaatatgaaatctc 36681129  T
Q  482 ataattagataagggaccattcttgtaattaagcc 516  Q
    |||||||| ||||||||||||||||||||||||||    
T  36681128 ataattagttaagggaccattcttgtaattaagcc 36681094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 320 - 516
Target Start/End: Original strand, 36682251 - 36682446
Alignment:
Q  320 gatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactga 419  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||    
T  36682251 gatgatgaattt-atgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacttttttgaacaaaagttaatagaatggatttatttgaccga 36682349  T
Q  420 tggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcc 516  Q
     |||| |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  36682350 cggagaaaacttatgggaccaaactgaaacgaaaattaattgtggaaccaatgtgaaatctcataattagttaagggactattcttgtaattaagcc 36682446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 317 - 513
Target Start/End: Original strand, 36404258 - 36404458
Alignment:
Q  317 gaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatgg----atttatt 412  Q
    |||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||    |||||||    
T  36404258 gaagatgatgaattttctgggtttgaagatgaagttgatgaaggaggaagatgaatgttaacggttttgaacaaaagttaacagaatggatttatttatt 36404357  T
Q  413 tgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaatta 512  Q
    | ||||| |||||||| |||||  | || ||| |||| |||||||||  |||||||||  |||||||| |||||||| ||| ||||||||  ||||||||    
T  36404358 taactgagggaggaaatttatgaaaccatattaaaacaaaaattaataatgggaccaaaatgaaatcttataattagttaaaggaccatttatgtaatta 36404457  T
Q  513 a 513  Q
    |    
T  36404458 a 36404458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 282 - 517
Target Start/End: Original strand, 5062018 - 5062254
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatga-tgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacat 380  Q
    ||||||| || || |||||||||| ||| |  ||||||||| | |||||||| |||| || ||||||||| ||| ||| ||  ||||||||||||||||     
T  5062018 tgatgaatttaattaatttttctgcgttaggttatgaagattaatgaattttctgggtttaaggatgaagttgaagaatgaaaaagatgaatgttaacaa 5062117  T
Q  381 ttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatct 480  Q
    |||||||||||| ||||| ||||| |||||||||||| |  |||| |||||||||||||| | ||| | ||||||||||   ||||||||  ||||||||    
T  5062118 ttttgaacaaaaattaacggaatgaatttatttgactaacagaggtaacttatgggatcagaatgagatgaaaattaataaggggaccaaaatgaaatct 5062217  T
Q  481 cataattagataagggaccattcttgtaattaagcca 517  Q
    ||||||||  ||||||||||||  |||||||||||||    
T  5062218 cataattatttaagggaccatttatgtaattaagcca 5062254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 314 - 497
Target Start/End: Complemental strand, 36404062 - 36403879
Alignment:
Q  314 tatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttattt 413  Q
    ||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||| |||||  ||||||||||||||||| |||||||||||||||    
T  36404062 tatgaagatgatgaattttctgagtttgaggatgaagttgatgaaggaggaagatgaatattaacggttttgaacaaaagttaatagaatggatttattt 36403963  T
Q  414 gactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataaggga 497  Q
    |||| |  ||||||| |||||||| || |||  ||  |||||||||  ||| || ||  |||||||||||| |||| |||||||    
T  36403962 gacttagagaggaaatttatgggaccatattagaataaaaattaataatggaactaaaatgaaatctcatagttagttaaggga 36403879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 36681604 - 36681451
Alignment:
Q  7 cgagtgagatgaagataagtgagtggtgtggggaaagaaaggggagagggtgtgttgttgttgttatgatttaggttaattagttaaatttgcnnnnnnn 106  Q
    |||| |||| |||||||||||||||||||||||||||    ||| ||| |||||||||||||||||||||||||||||||||||||||||||            
T  36681604 cgagggagaagaagataagtgagtggtgtggggaaag----gggggagagtgtgttgttgttgttatgatttaggttaattagttaaatttgtttttttt 36681509  T
Q  107 nnnnggcaaaattaaatttacaatttgttactttaatatatggttataacttttgtta 164  Q
        ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  36681508 ttttggcaaaattaaatttacaatttgttgctttaatttatggttataacttttgtta 36681451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 282 - 410
Target Start/End: Complemental strand, 26379601 - 26379473
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 381  Q
    ||||||| || || |||||| |||||||||  ||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||||||||||||||||||    
T  26379601 tgatgaagtttattaattttgctgggtttgattatgaagatgatgaattttctgggtttgagaatgaagttgatgtaggaggaagatgaatgttaacatt 26379502  T
Q  382 tttgaacaaaagttaacagaatggattta 410  Q
    ||| |||||||||||||| ||| ||||||    
T  26379501 ttttaacaaaagttaacataatagattta 26379473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 353 - 519
Target Start/End: Complemental strand, 5060880 - 5060715
Alignment:
Q  353 gatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaa 452  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| | |||| |||||||||||||| ||| | |||||||||||  | | ||| |||||    
T  5060880 gatgaaggaggaagatgaatgttaacggttttgaacaaaagttaatataatg-atttatttgactgacggaagtaacttatgggactagaatgagacgaa 5060782  T
Q  453 aattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaagccaaa 519  Q
    |||||||   |||| |||  ||||||||||||||||  ||||||||||||  |||||||||| ||||    
T  5060781 aattaataaggggatcaaaatgaaatctcataattatttaagggaccatttatgtaattaagtcaaa 5060715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 293 - 519
Target Start/End: Original strand, 28240657 - 28240882
Alignment:
Q  293 atgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaa 392  Q
    |||||||||||||| ||||   | ||| | ||| |||||| |||| || | ||||||| |||||||   |||||||||||||||||| ||||  ||||||    
T  28240657 atgaatttttctggttttggtgaagaatacgataaattttctgggttttacgatgaaggtgatgaaat-ggaagatgaatgttaacagtttttcacaaaa 28240755  T
Q  393 gttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagata 492  Q
    ||||||||||||||||||  |||  || ||||| ||||||  ||| |||| ||  ||||||||||||   |||||||| || |||| |||||||||  ||    
T  28240756 gttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggacgaaaattaataaggggaccaaattaaaatttcataattattta 28240855  T
Q  493 agggaccattcttgtaattaagccaaa 519  Q
    ||||||||||  |||||||||||||||    
T  28240856 agggaccatttatgtaattaagccaaa 28240882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 26380603 - 26380729
Alignment:
Q  284 atgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttt 383  Q
    |||||||| || ||||||||| |||||   || || ||||||||||||| || | |||||||||||| ||||| |||| ||||||||||||||| |||||    
T  26380603 atgaaatttattaatttttctaggtttagttacgatgatgatgaattttttgagtttgaggatgaagttgatgtaggatgaagatgaatgttaatatttt 26380702  T
Q  384 tgaacaaaagttaacagaatggattta 410  Q
    | ||||||| |||||| |||| |||||    
T  26380703 ttaacaaaaattaacataatgaattta 26380729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 344 - 498
Target Start/End: Complemental strand, 40783264 - 40783112
Alignment:
Q  344 gatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaat 443  Q
    |||||||| |||||||||  | ||||||||||||  |||||  | || | ||||| |||||||||||||||   || |||| |||||||| |||||||||    
T  40783264 gatgaagacgatgaagga--atgatgaatgttaatgttttttcataatatttaacggaatggatttatttggtggacggagaaaacttataggatcaaat 40783167  T
Q  444 tgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggac 498  Q
    ||||||||| ||||||| ||||||||   | ||| ||||||||||| ||||||||    
T  40783166 tgaaacgaatattaattatgggaccaccatcaaaactcataattagttaagggac 40783112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 293 - 516
Target Start/End: Complemental strand, 28239576 - 28239354
Alignment:
Q  293 atgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaa 392  Q
    ||||||||||||||| |||   ||||| | |||||||||| |||  || | ||||||  |||||||   |||||||||||||||||| ||||  ||||||    
T  28239576 atgaatttttctgggattggtgatgaatacgatgaattttctggattttaagatgaacgtgatgaaat-ggaagatgaatgttaacagtttttcacaaaa 28239478  T
Q  393 gttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagata 492  Q
    ||||| ||||||||||||  |||  || | ||| || |||  ||| |||| ||  |||||||||| |   |||||||| |||||||||||||||||  ||    
T  28239477 gttaatagaatggatttaaatgatggacgtaggtaatttaaaggaccaaaatgggacgaaaattattaaggggaccaaattgaaatctcataattattta 28239378  T
Q  493 agggaccattcttgtaattaagcc 516  Q
    ||||||||||  |||| |||||||    
T  28239377 agggaccatttatgtatttaagcc 28239354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 3833742 - 3833640
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 381  Q
    ||||||| || || ||||||| ||| ||||  ||||||||||||||||||| |||| || ||||||||| |||||||  | ||||||||||||||||| |    
T  3833742 tgatgaattttattaatttttatggatttggttatgaagatgatgaattttctgggtttaaggatgaagttgatgaacaaagaagatgaatgttaacaat 3833643  T
Q  382 ttt 384  Q
    |||    
T  3833642 ttt 3833640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 516
Target Start/End: Complemental strand, 26271666 - 26271613
Alignment:
Q  463 gggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcc 516  Q
    |||||||| ||||||| |||||||||  |||||||||| || ||||||||||||    
T  26271666 gggaccaaattgaaatttcataattatttaagggaccaatcatgtaattaagcc 26271613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 433
Target Start/End: Original strand, 26273204 - 26273248
Alignment:
Q  389 aaaagttaacagaatggatttatttgactgatggaggaaacttat 433  Q
    |||| |||||||||||||||||||||||||| | ||| |||||||    
T  26273204 aaaatttaacagaatggatttatttgactgacgaaggtaacttat 26273248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 296 - 514
Target Start/End: Original strand, 38525615 - 38525833
Alignment:
Q  296 aatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagtt 395  Q
    ||||||| | ||||||  ||||||||||||| || || |||| || ||||||||| |||||||||||||||||||||||||||  |||||||||||||||    
T  38525615 aatttttttaggtttggctatgaagatgatgcatcttctgggtttaaggatgaagttgatgaaggaggaagatgaatgttaacggttttgaacaaaagtt 38525714  T
Q  396 aacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagg 495  Q
    |||||||||||||||||||||||| |||||||| |||| ||| || |||||||| ||||||| |   ||||||||  ||||||||||||||||| |||||    
T  38525715 aacagaatggatttatttgactgacggaggaaatttataggaccatattgaaacaaaaattactaaggggaccaaaatgaaatctcataattagttaagg 38525814  T
Q  496 gaccattcttgtaattaag 514  Q
    |||||||  ||||||||||    
T  38525815 gaccatttatgtaattaag 38525833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 296 - 516
Target Start/End: Complemental strand, 38524563 - 38524352
Alignment:
Q  296 aatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagtt 395  Q
    ||||||||||||||||  |||||||||||| |||||| |||| ||||||||||||         |||||||||||||||||||  |||||||||||||||    
T  38524563 aatttttctgggtttggttatgaagatgattaattttctgggtttgaggatgaag---------gaggaagatgaatgttaacggttttgaacaaaagtt 38524473  T
Q  396 aacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagg 495  Q
    |||||||||||||||||||||||| |||||||| |||||||| || |||| ||| ||||||| |  |||||||||  ||||||||||||||||| |||||    
T  38524472 aacagaatggatttatttgactgacggaggaaatttatgggaccatattggaacaaaaattattaatgggaccaaaatgaaatctcataattagttaagg 38524373  T
Q  496 gaccattcttgtaattaagcc 516  Q
    |||||||  ||||||||||||    
T  38524372 gaccatttatgtaattaagcc 38524352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 282 - 377
Target Start/End: Complemental strand, 2766461 - 2766366
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaa 377  Q
    ||||||| || || ||||||| ||||||||  ||||| ||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||    
T  2766461 tgatgaattttattaatttttatgggtttggatatgatgatgatgaattttctgggtttgaagatgaagttgatgaaggaggaagatgaatgttaa 2766366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 394 - 516
Target Start/End: Complemental strand, 45511145 - 45511023
Alignment:
Q  394 ttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataa 493  Q
    ||||||||||| |||||||||||||| ||||| ||||||||| |  ||| |||  |||||||||||   |||||||  |||||||||||||||||  |||    
T  45511145 ttaacagaatgaatttatttgactgacggaggtaacttatggaactaaaatgaggcgaaaattaataaagggaccatattgaaatctcataattatttaa 45511046  T
Q  494 gggaccattcttgtaattaagcc 516  Q
    |||| ||||  ||||||||||||    
T  45511045 gggagcatttatgtaattaagcc 45511023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 2753251 - 2753318
Alignment:
Q  317 gaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt 384  Q
    ||||||||||| |||| | || |||||||||||| ||||||||||||||||||||||||||| |||||    
T  2753251 gaagatgatgatttttttcggtttgaggatgaagttgatgaaggaggaagatgaatgttaacgttttt 2753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 378
Target Start/End: Original strand, 2767148 - 2767197
Alignment:
Q  329 ttttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaac 378  Q
    |||| |||| |||||||| ||| |||||||||| ||||||||||||||||    
T  2767148 ttttctgggtttgaggattaagttgatgaaggaagaagatgaatgttaac 2767197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 296 - 502
Target Start/End: Complemental strand, 29214148 - 29213942
Alignment:
Q  296 aatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagtt 395  Q
    ||||||| | ||||||  ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||   ||||||| ||||||||||||| ||    
T  29214148 aatttttataggtttggttatgaagatgatgaattttctgggtttgaggatgaagttgatgaaggaggaagatacgtgttaacgtttttgaacaaaactt 29214049  T
Q  396 aacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagg 495  Q
    |||| ||| ||||||||||| |||  || |||| ||||| || || ||| ||||||||||||||   || |||||  ||||||||||| ||||| |||||    
T  29214048 aacaaaatagatttatttgaatgacagatgaaatttatgagaccatattaaaacgaaaattaataagggaaccaacatgaaatctcatcattagttaagg 29213949  T
Q  496 gaccatt 502  Q
    |||||||    
T  29213948 gaccatt 29213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 293 - 516
Target Start/End: Complemental strand, 11384414 - 11384192
Alignment:
Q  293 atgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaa 392  Q
    |||||||||||||| ||||   ||||| |||||||||||| |||  || | ||||||| |||||||   |||||||||||||||||| ||||  ||||||    
T  11384414 atgaatttttctggatttggtgatgaatatgatgaattttctggattttacgatgaaggtgatgaaat-ggaagatgaatgttaacagtttttcacaaaa 11384316  T
Q  393 gttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagata 492  Q
    ||||||||||||||||||  |||  || ||||| || |||  ||| | || || ||||||||||| |  ||||||||| |||||||||||||||||  ||    
T  11384315 gttaacagaatggatttaaatgatggacggaggtaatttaaaggaccgaaatggaacgaaaattattaatgggaccaaattgaaatctcataattattta 11384216  T
Q  493 agggaccattcttgtaattaagcc 516  Q
    ||||||||||  | ||||||||||    
T  11384215 agggaccatttatataattaagcc 11384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 282 - 516
Target Start/End: Complemental strand, 44491955 - 44491719
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaac--a 379  Q
    ||||||| || || ||||||| || |||||  ||||||||||||||||||| |||| ||||  |||||| ||||||||||||||||||||| |||||       
T  44491955 tgatgaattttattaatttttatgagtttgattatgaagatgatgaattttctgggtttgaaaatgaagttgatgaaggaggaagatgaatcttaacgtt 44491856  T
Q  380 tttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatc 479  Q
    ||||| |  ||||  | || |||| ||||||  || | ||  |||| ||||||  ||| |||| |||  |||||||||||  ||||||||| ||||||||    
T  44491855 ttttttattaaaatctgacggaatagatttaagtggcggacagaggtaacttaaaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatc 44491756  T
Q  480 tcataattagataagggaccattcttgtaattaagcc 516  Q
    |||||||||  ||||||||||||  ||||||||||||    
T  44491755 tcataattatttaagggaccatttatgtaattaagcc 44491719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 296 - 502
Target Start/End: Original strand, 29214917 - 29215114
Alignment:
Q  296 aatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagtt 395  Q
    ||||||| ||||||||  |||||||||| |||||||| |||| ||||||||||||         || |||||||||||||||  ||||||||||||| ||    
T  29214917 aatttttttgggtttggttatgaagatgctgaattttttgggtttgaggatgaag---------gaagaagatgaatgttaatgtttttgaacaaaactt 29215007  T
Q  396 aacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagg 495  Q
    ||||||||| ||||||| |||  | |   |||| || ||||| || |||||||||||| |||||   ||||||||  | ||||||||||||||| |||||    
T  29215008 aacagaatgaatttattagaccaacgtttgaaatttctgggaccatattgaaacgaaatttaataaggggaccaacataaaatctcataattagttaagg 29215107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 293 - 516
Target Start/End: Original strand, 11385547 - 11385769
Alignment:
Q  293 atgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaa 392  Q
    |||||||||||||||||||   ||||| | |||||||||| |||  || | ||||||| |||||||  || |||||||||||||||| ||||  ||||||    
T  11385547 atgaatttttctgggtttgctgatgaatacgatgaattttctggattttacgatgaaggtgatgaaatag-aagatgaatgttaacagtttttcacaaaa 11385645  T
Q  393 gttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagata 492  Q
    ||||||| ||||||||||  |||  || ||| | ||||||   || |||| ||  ||||||||||||    ||||||| |||||||||||||||||  ||    
T  11385646 gttaacataatggatttaaatgatagagggatgtaacttaaaagaccaaaatgggacgaaaattaataaatggaccaaattgaaatctcataattattta 11385745  T
Q  493 agggaccattcttgtaattaagcc 516  Q
    | ||||||||  ||||||||||||    
T  11385746 aaggaccatttatgtaattaagcc 11385769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 489
Target Start/End: Complemental strand, 2274281 - 2274146
Alignment:
Q  353 gatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaa 452  Q
    |||||| ||| || ||||||||||| ||||||||| ||||||||| | |||||||||||||| ||||  ||| ||| |||||||| ||  ||  ||||||    
T  2274281 gatgaaagagaaaaatgaatgttaatatttttgaaaaaaagttaatataatggatttatttggctga-cgagtaaatttatgggaccatgttagaacgaa 2274183  T
Q  453 aattaattgtgggaccaatttgaaatctcataattag 489  Q
    |||||||   ||| ||||| |||||||||||||||||    
T  2274182 aattaataagggggccaatatgaaatctcataattag 2274146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 394 - 502
Target Start/End: Complemental strand, 32133583 - 32133475
Alignment:
Q  394 ttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataa 493  Q
    |||||| ||||||||||||||||||||| ||| |||||||| ||||| | ||   |||||||||||   |||||||  |||||||||||||||||  |||    
T  32133583 ttaacataatggatttatttgactgatgaaggtaacttatgagatcagaatggggcgaaaattaataaggggaccatattgaaatctcataattatttaa 32133484  T
Q  494 gggaccatt 502  Q
    |||||||||    
T  32133483 gggaccatt 32133475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 394 - 516
Target Start/End: Original strand, 32134983 - 32135106
Alignment:
Q  394 ttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacg-aaaattaattgtgggaccaatttgaaatctcataattagata 492  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||  ||| |||| || |||||||||   |||||||  ||||||||||||||| |  ||    
T  32134983 ttaacagaatgaatttatttgactgacggaggtaacttatgggactaaaatgaagcgaaaaattaataaagggaccatattgaaatctcataatgattta 32135082  T
Q  493 agggaccattcttgtaattaagcc 516  Q
    ||||| ||||  ||||||||||||    
T  32135083 agggagcatttatgtaattaagcc 32135106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 353 - 459
Target Start/End: Original strand, 56338358 - 56338464
Alignment:
Q  353 gatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaa 452  Q
    |||||| |||||| | |||||||||| ||||||||||||| ||||| ||||| ||||||||||||||   || ||| |||||||| || |||| ||| ||    
T  56338358 gatgaaagaggaaaacgaatgttaacgtttttgaacaaaacttaacggaatgaatttatttgactgacatagaaaatttatgggaccacattggaacaaa 56338457  T
Q  453 aattaat 459  Q
    |||||||    
T  56338458 aattaat 56338464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 515
Target Start/End: Original strand, 44493084 - 44493283
Alignment:
Q  315 atgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt-gaacaaaagttaacagaatggatttattt 413  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||| ||| ||||||  ||| | ||||| ||  ||||  | || |||||||||||  |    
T  44493084 atgaagatgatgaattt-atgggtttgaggatgaagataatgaagg-ggatgatgaacattagctttttttgattaaaatctgacggaatggatttaagt 44493181  T
Q  414 gactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaa 513  Q
    | | || ||||| ||||||  ||| |||| |||  |||||||||||   |||||||| || ||||||||||||||  ||||||||||||  |||||||||    
T  44493182 ggcggacggaggtaacttaaaggaccaaaatgaggcgaaaattaataaagggaccaaattaaaatctcataattatttaagggaccatttatgtaattaa 44493281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 8e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 296 - 519
Target Start/End: Complemental strand, 6132651 - 6132429
Alignment:
Q  296 aatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagtt 395  Q
    |||||||||||||||   ||||| ||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  6132651 aatttttctgggtttagttatgatgatgatgaattttctgggtttgaggatgaagttgatgcaggaggaagatgaatgttaacattttttaacaaaagtt 6132552  T
Q  396 aacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagg 495  Q
    |||| ||||||||||  |||  ||  |||  || |||  ||| |||| || |||||||||||||    ||||||| |  |||| |||||||||  |||||    
T  6132551 aacataatggatttaaatgatggacagagataaattaaaggaccaaaatggaacgaaaattaataagaggaccaaatcaaaatttcataatta-ttaagg 6132453  T
Q  496 gaccattcttgtaattaagccaaa 519  Q
    |||||||  |||||||||||||||    
T  6132452 gaccatttgtgtaattaagccaaa 6132429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 293 - 516
Target Start/End: Complemental strand, 42127582 - 42127360
Alignment:
Q  293 atgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaa 392  Q
    |||||||||| ||||||||   ||||| |||||||||||| |||  || | ||||||| |||||||   |||||||||||||||||| ||||  ||||||    
T  42127582 atgaatttttatgggtttggtgatgaatatgatgaattttctggattttacgatgaaggtgatgaaat-ggaagatgaatgttaacagtttttcacaaaa 42127484  T
Q  393 gttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagata 492  Q
    ||||||||||||||||||  |||  || ||||| || |||  ||| | || || ||||||||||| |   |||||||| |||||||||||||||||  ||    
T  42127483 gttaacagaatggatttaaatgatggacggaggtaatttaaaggaccgaaatggaacgaaaattattaaggggaccaaattgaaatctcataattattta 42127384  T
Q  493 agggaccattcttgtaattaagcc 516  Q
    ||||||||||  ||||||||||||    
T  42127383 agggaccatttatgtaattaagcc 42127360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 327 - 410
Target Start/End: Original strand, 6133612 - 6133695
Alignment:
Q  327 aattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggattta 410  Q
    |||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  6133612 aattttttgggtttgaggatgaagttgatgtaggaggaagatgaatgttaacattttttaacaaaagttaacataatggattta 6133695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 293 - 499
Target Start/End: Complemental strand, 45015531 - 45015326
Alignment:
Q  293 atgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaa 392  Q
    |||||||||||||||||||   ||| | |||||||||||| |||| || | ||||||| |||||||   |||||||||||||||||| ||||  ||||||    
T  45015531 atgaatttttctgggtttggtgatggatatgatgaattttttgggttttacgatgaaggtgatgaaat-ggaagatgaatgttaacagtttttcacaaaa 45015433  T
Q  393 gttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagata 492  Q
    ||||||||||||||||||  |||  || ||||| ||||||  ||| |||| ||  ||||||||||||   |||| ||| || |||| |||||||||  ||    
T  45015432 gttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggacgaaaattaataaggggatcaaattaaaatttcataattattta 45015333  T
Q  493 agggacc 499  Q
    |||||||    
T  45015332 agggacc 45015326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 516
Target Start/End: Original strand, 42128785 - 42128938
Alignment:
Q  363 gaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgt 462  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||||  |||  || ||||| ||||||  ||| |||| ||  ||||||||||||       
T  42128785 gaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatagagggaggtaacttaaaggaccaaaatgggacgaaaattaataaa 42128884  T
Q  463 gggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcc 516  Q
    || ||||| |||||||||||||||||  ||| ||||||||  ||||||||||||    
T  42128885 ggaaccaaattgaaatctcataattatttaaaggaccatttatgtaattaagcc 42128938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 525
Target Start/End: Complemental strand, 43711713 - 43711577
Alignment:
Q  389 aaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataatta 488  Q
    |||| |||||| ||||||||||||||||||| ||||| ||||||||||| || | || | |||||||||||   |||| ||  |||||||||||||||||    
T  43711713 aaaatttaacataatggatttatttgactgacggaggtaacttatgggaccagaatggagcgaaaattaataaagggatcatattgaaatctcataatta 43711614  T
Q  489 gataagggaccattcttgtaattaagccaaagataaa 525  Q
      ||||||||||||  |||||||||||| ||| ||||    
T  43711613 tttaagggaccatttatgtaattaagcctaagttaaa 43711577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 282 - 458
Target Start/End: Original strand, 48571690 - 48571864
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 381  Q
    ||||||| || || ||||||| ||| ||||  ||||||||||||||||||| | || |||||||||||  |||||| |||||||||||||||||||| ||    
T  48571690 tgatgaagtttattaatttttttggatttggttatgaagatgatgaatttt-taggtttgaggatgaaattgatgatggaggaagatgaatgttaacgtt 48571788  T
Q  382 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaa 458  Q
    ||||||||||| |||| |||||| |||||||||||| | ||| |||| |||||| | |  |||||||||||||||||    
T  48571789 tttgaacaaaacttaatagaatgaatttatttgactaacgga-gaaatttatggaaccgtattgaaacgaaaattaa 48571864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 13324567 - 13324512
Alignment:
Q  293 atgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatga 348  Q
    |||||||||| ||||||| || ||||||||||||||||||||||| |||| |||||    
T  13324567 atgaatttttatgggtttatggatgaagatgatgaattttatgggtttgatgatga 13324512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 412
Target Start/End: Original strand, 13325383 - 13325478
Alignment:
Q  315 atgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatt 412  Q
    |||||||||||||||||| | || |||| ||||||||| ||||||  || |||||||||||||  |||||  |||| | ||||| |||||||||||||    
T  13325383 atgaagatgatgaattttcttggtttgatgatgaagataatgaag--gggagatgaatgttaatgttttttcacaagatttaacggaatggatttatt 13325478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 48677945 - 48678012
Alignment:
Q  317 gaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt 384  Q
    ||||||||||| |||| | ||  ||| ||||||  ||||||| |||||||||||||||||||||||||    
T  48677945 gaagatgatgagttttttaggtctgatgatgaatttgatgaatgaggaagatgaatgttaacattttt 48678012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 314 - 519
Target Start/End: Complemental strand, 1798 - 1594
Alignment:
Q  314 tatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttattt 413  Q
    ||||||||||||||||||| ||| || ||||||||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||||| ||||||||    
T  1798 tatgaagatgatgaattttctggtct-gaggatgaatatgatgaagaaggaagattaatgttaacgcttttgaacaaaagttaacagaatgaatttattt 1700  T
Q  414 gactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaa 513  Q
    |||| | |||| ||| || ||||| || || |||   |||||||||   ||||  ||  | |||||||||| |||| ||| ||| ||||  |||||||||    
T  1699 gactaagggagaaaatttttgggaccatatagaacgaaaaattaataaggggattaacataaaatctcatagttagttaatggatcatttatgtaattaa 1600  T
Q  514 gccaaa 519  Q
    ||||||    
T  1599 gccaaa 1594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 282 - 519
Target Start/End: Complemental strand, 22970324 - 22970088
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 381  Q
    ||||||| || || ||||||||||| ||||  |||||||||| |||||||| |||| |||||||| ||| | ||||||||||||||||||||||||| ||    
T  22970324 tgatgaagtttattaatttttctggatttggttatgaagatggtgaattttctgggtttgaggataaagtt-atgaaggaggaagatgaatgttaacgtt 22970226  T
Q  382 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 481  Q
    ||| ||| ||| ||||  ||||| |||||  |||   | ||||| || |||  ||| ||||||| | |||||||||||   ||| |||| ||||||| ||    
T  22970225 ttttaaccaaaattaatggaatgaatttaactgatgaacggaggtaatttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttc 22970126  T
Q  482 ataattagataagggaccattcttgtaattaagccaaa 519  Q
    |||||||  ||||||||||||  | |||||||||||||    
T  22970125 ataattatttaagggaccatttatataattaagccaaa 22970088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 282 - 519
Target Start/End: Original strand, 23818070 - 23818306
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 381  Q
    ||||||| || || ||||||||||| ||||  |||||||||| |||||||| |||| |||||||| ||| | ||||||||||||||||||||||||| ||    
T  23818070 tgatgaagtttattaatttttctggatttggttatgaagatggtgaattttctgggtttgaggataaag-ttatgaaggaggaagatgaatgttaacgtt 23818168  T
Q  382 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 481  Q
    ||| ||| ||| ||||  ||||| |||||  |||   | ||||| || |||  ||| ||||||| | |||||||||||   ||| |||| ||||||| ||    
T  23818169 ttttaaccaaaattaatggaatgaatttaactgatgaacggaggtaatttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttc 23818268  T
Q  482 ataattagataagggaccattcttgtaattaagccaaa 519  Q
    |||||||  ||||||||||||  | |||||||||||||    
T  23818269 ataattatttaagggaccatttatataattaagccaaa 23818306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 422 - 497
Target Start/End: Complemental strand, 20117858 - 20117783
Alignment:
Q  422 gaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataaggga 497  Q
    ||||||||||||  || |||||||||||||||||||||  || || |||| ||||| ||||||||||| |||||||    
T  20117858 gaggaaacttataagaccaaattgaaacgaaaattaataatgcgatcaatatgaaacctcataattagttaaggga 20117783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 38320542 - 38320642
Alignment:
Q  390 aaagttaacagaat-ggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataatta 488  Q
    |||||||||| ||| ||||| || ||| | || |||| || |||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  38320542 aaagttaacataattggattaatatgattaattgaggtaagttatgggaccaaattgaaacgaaaactaattatgggaccaatatgaaatctcataatta 38320641  T
Q  489 g 489  Q
    |    
T  38320642 g 38320642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 389 - 516
Target Start/End: Original strand, 18852855 - 18852983
Alignment:
Q  389 aaaagttaacagaat-ggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataatt 487  Q
    |||||||||| |||| |||||||||| ||| | | ||  || |||||||| ||||||||| ||||||||||||   || ||||| |||||| ||||||||    
T  18852855 aaaagttaactgaattggatttatttaactaacgaagataaattatgggaccaaattgaagcgaaaattaattacagggccaatatgaaatttcataatt 18852954  T
Q  488 agataagggaccattcttgtaattaagcc 516  Q
    || ||||||| ||||  ||||||||||||    
T  18852955 agttaagggatcatttatgtaattaagcc 18852983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 358
Target Start/End: Original strand, 1303 - 1379
Alignment:
Q  282 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaa 358  Q
    ||||||| || || ||||||| ||||||||  ||||||||||||||||||| | || ||||||||||||||||||||    
T  1303 tgatgaagtttattaatttttttgggtttggttatgaagatgatgaattttctaggtttgaggatgaagatgatgaa 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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