View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15780_high_6 (Length: 300)

Name: NF15780_high_6
Description: NF15780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15780_high_6
NF15780_high_6
[»] chr2 (6 HSPs)
chr2 (24-283)||(21189457-21189720)
chr2 (49-283)||(2590556-2590800)
chr2 (225-283)||(18739115-18739173)
chr2 (225-279)||(35969281-35969335)
chr2 (225-271)||(14433603-14433649)
chr2 (239-283)||(1043200-1043244)
[»] scaffold0028 (2 HSPs)
scaffold0028 (34-283)||(110176-110430)
scaffold0028 (225-283)||(127755-127813)
[»] chr3 (3 HSPs)
chr3 (24-225)||(16366227-16366427)
chr3 (198-283)||(19930008-19930097)
chr3 (198-283)||(42253534-42253623)
[»] chr1 (6 HSPs)
chr1 (36-279)||(9111353-9111599)
chr1 (225-283)||(12141656-12141714)
chr1 (225-283)||(24981166-24981224)
chr1 (225-283)||(47580452-47580510)
chr1 (225-283)||(43254171-43254228)
chr1 (220-260)||(51465563-51465603)
[»] chr4 (7 HSPs)
chr4 (101-283)||(895498-895685)
chr4 (225-284)||(13010537-13010596)
chr4 (225-283)||(6667723-6667781)
chr4 (225-281)||(20058107-20058163)
chr4 (225-284)||(44643507-44643565)
chr4 (225-266)||(6671395-6671436)
chr4 (225-284)||(31767452-31767510)
[»] chr8 (10 HSPs)
chr8 (45-283)||(21185138-21185383)
chr8 (225-283)||(1788903-1788961)
chr8 (225-283)||(39655703-39655761)
chr8 (225-283)||(17028410-17028468)
chr8 (225-283)||(17558846-17558904)
chr8 (45-88)||(21184455-21184498)
chr8 (252-283)||(21347167-21347198)
chr8 (225-259)||(38676893-38676927)
chr8 (225-257)||(17088774-17088806)
chr8 (225-281)||(38678742-38678797)
[»] chr7 (8 HSPs)
chr7 (225-283)||(22301155-22301213)
chr7 (220-284)||(3850538-3850602)
chr7 (229-283)||(11674056-11674110)
chr7 (225-283)||(31210079-31210137)
chr7 (225-281)||(31206630-31206686)
chr7 (220-283)||(39426450-39426513)
chr7 (225-283)||(15569622-15569679)
chr7 (225-283)||(32352433-32352490)
[»] scaffold0014 (1 HSPs)
scaffold0014 (225-283)||(82677-82735)
[»] chr6 (6 HSPs)
chr6 (225-283)||(6591853-6591911)
chr6 (225-283)||(19697849-19697907)
chr6 (228-281)||(15518074-15518127)
chr6 (225-283)||(24044937-24044994)
chr6 (223-284)||(24041632-24041692)
chr6 (225-277)||(19973730-19973781)
[»] chr5 (5 HSPs)
chr5 (225-278)||(18594875-18594928)
chr5 (227-283)||(26703023-26703079)
chr5 (227-283)||(26972756-26972812)
chr5 (136-283)||(13292009-13292160)
chr5 (229-281)||(39292156-39292208)
[»] scaffold0076 (1 HSPs)
scaffold0076 (225-281)||(6764-6820)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 24 - 283
Target Start/End: Complemental strand, 21189720 - 21189457
Alignment:
Q  24 tgttgtatatttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagactt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||    
T  21189720 tgttgtatatttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattaaaatcaataagcaaaagagaga--tcattagactt 21189623  T
Q  124 atctatctttaaaattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-atc 222  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  21189622 atctatctttaaaattgcggtgatttgaggctggtaaagaagagcaaacaaacgccaaaccatgaatagcaataacctgcaaaatagtaaactgtttatc 21189523  T
Q  223 taa-----ggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||     ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  21189522 taacctgaggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 21189457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 283
Target Start/End: Complemental strand, 2590800 - 2590556
Alignment:
Q  49 ttatctcaaaataacaatcagcataaacatataagcatt------agaatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcg 142  Q
    ||||||| |||||| ||| ||||||||||||||||||||      | || |||||| ||||||||||||||||||||||||||||  ||||||| |||||    
T  2590800 ttatctctaaataataatgagcataaacatataagcatttaaaaaaaaaacaataaacaaaagagagagatcattagacttatctg-ctttaaa-ttgcg 2590703  T
Q  143 gtaatttgaggctggtaatgaaga-gcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacata 236  Q
    || | |||| || |||||||  || | |||||||||  ||  ||||||  |  || |||||||| || |||||| |||     | || ||||||||||||    
T  2590702 gtgacttgaagccggtaatggtgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaggcgtgacata 2590603  T
Q  237 gtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||| |||||||| |||||||||||| ||||||||||    
T  2590602 gtcactgtccttgaggattttattcgcctcataagcgcatatcctcc 2590556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 18739115 - 18739173
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  18739115 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 18739173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 35969281 - 35969335
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatc 279  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  35969281 aggcgtgacatagtcactgtccttgaagattttatccgcctcaaaagcgcatatc 35969335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 14433603 - 14433649
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataag 271  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||    
T  14433603 aggcgtgacatagtcactgtccttgtggattttatccgcctcataag 14433649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 1043244 - 1043200
Alignment:
Q  239 cactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||| ||||||||||| |||||| || ||||||||||    
T  1043244 cactgtccttgaggattttatccgtctcataggcgcatatcctcc 1043200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 34 - 283
Target Start/End: Complemental strand, 110430 - 110176
Alignment:
Q  34 ttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatcttt 133  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||    
T  110430 ttattgacatgtgaattatctcaaaataaaaatcagcataaacatataagcattaaaatcaataagcaaaagaaagagatcgttagacttatctatcttt 110331  T
Q  134 aaaattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttatcta-----aggc 228  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||     ||||    
T  110330 aaaattgcggtgatttgaggctggtaatgaagagcaaacaaacaccaaaccttgaatagcaataacctgcaaaatagtaatctgttatctaacatgaggc 110231  T
Q  229 gtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  110230 gtgacatagtcactgtccttgaggattttatccgcctcataaacgcatatcctcc 110176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 127813 - 127755
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||    
T  127813 aggcgtgacatagtcactgtccttgaggattttatccgcctcagaaacgcatatcctcc 127755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 225
Target Start/End: Original strand, 16366227 - 16366427
Alignment:
Q  24 tgttgtatatttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagactt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16366227 tgttgtatatttattgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaa-agagagatcattagactt 16366325  T
Q  124 atctatctttaaaattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttatct 223  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16366326 atctatctttaaaattgcggtgatttgaggctggtaatgaagagcaaacaaacatcaaaccatgaatagcaataacctgcaaaatagtaaactgttatct 16366425  T
Q  224 aa 225  Q
    ||    
T  16366426 aa 16366427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 19930008 - 19930097
Alignment:
Q  198 acctgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||| ||||| ||     |||||||||| |||||| |||||| | || |||||||||||||||||| ||||||||||    
T  19930008 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcaccgtccttaagga-tttatccgcctcataagcgcatatcctcc 19930097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 42253534 - 42253623
Alignment:
Q  198 acctgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||| ||||| ||     |||||||||| ||||||||||||| | || |||| ||||||||||||| ||||||||||    
T  42253534 acctgcaaaatagtaaaccgttatataacatgaggcgtgacaaagtcactgtccttaagga-tttacccgcctcataagcgcatatcctcc 42253623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 36 - 279
Target Start/End: Original strand, 9111353 - 9111599
Alignment:
Q  36 attgacatgtgaattatctcaaaataacaatcagcataaacatataagcattagaatcaataagcaaaagagagagatcattagacttatctatctttaa 135  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  9111353 attgacatgtgaattatctcaaaataacaataagtataaacatataaacattaaaatcaataagcaaaagag--agatcattagacttatctatctttaa 9111450  T
Q  136 aattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgt 230  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||     |||| ||||||    
T  9111451 aattgcggtgatttgaggctcgtaatgaagagcaaacaaacatcactccatgaatagcaataacctgcaaaatagtaaactgttatataatctgaggcgt 9111550  T
Q  231 gacatagtcactgtccttgacgattttatccgcctcataagcacatatc 279  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  9111551 gacatagtcactgtccttgaggattttatccgcctcataagcgcatatc 9111599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 12141656 - 12141714
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  12141656 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 12141714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 24981166 - 24981224
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  24981166 aggcgtgacatagtcagcgtccttgaggattttatccgcctcataagcacatatcctcc 24981224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 47580510 - 47580452
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||  |||||||||    
T  47580510 aggcgtgacatagtcaatgtccttgaagattttatctgcctcataagcgaatatcctcc 47580452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 43254228 - 43254171
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  43254228 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 43254171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 51465603 - 51465563
Alignment:
Q  220 atctaaggcgtgacatagtcactgtccttgacgattttatc 260  Q
    |||| |||||||||||||||||||||||||  |||||||||    
T  51465603 atctgaggcgtgacatagtcactgtccttggagattttatc 51465563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 101 - 283
Target Start/End: Complemental strand, 895685 - 895498
Alignment:
Q  101 aaaagagagagatcattagacttatctatctttaaaattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  895685 aaaagagagagatcattagacttatctatctttaaaattgcggtgatttgaggctggtaatgaagaacaaacaaacaccaaaccatgaatagcaataacc 895586  T
Q  201 tgcaaaatagtaaactgttatcta-----aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    ||||||||||||||||||||||||     || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  895585 tgcaaaatagtaaactgttatctaacctgagtcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 895498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 13010537 - 13010596
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 284  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  13010537 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcct 13010596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 6667723 - 6667781
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  6667723 aggcgtgacatagtcactgttcttgaggattttatccgcctcataagcgcatatcctcc 6667781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 20058107 - 20058163
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 281  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  20058107 aggcgtgacatagtcactgtccttgaggattttatccgcctcattagcgcgtatcct 20058163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 284
Target Start/End: Complemental strand, 44643565 - 44643507
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 284  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||    
T  44643565 aggcgtgacatagtcactgtccttca-gattctatccgcctcataagcgcatatcctcct 44643507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 6671395 - 6671436
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctc 266  Q
    ||||||||||||||||| |||||||| |||||||||||||||    
T  6671395 aggcgtgacatagtcaccgtccttgaggattttatccgcctc 6671436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 31767452 - 31767510
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 284  Q
    |||||||||| | ||||| ||||| | ||||| |||||||||||||||||||||||||||    
T  31767452 aggcgtgacaaaatcactatccttaaggattt-atccgcctcataagcacatatcctcct 31767510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 283
Target Start/End: Original strand, 21185138 - 21185383
Alignment:
Q  45 tgaattatctcaaaataacaatcagcataaacatataagcattag-aatcaataagcaaaagagagagatcattagacttatctatctttaaaattgcgg 143  Q
    |||||| |||| |||||| |||||||||||||||||||||||||  || |||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  21185138 tgaattctctctaaataataatcagcataaacatataagcattaataaacaataagcaaaatagagagatcattagacttatctatctttaaaattgtgg 21185237  T
Q  144 taatttgaggctggtaatgaag-agcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgtt-----atctaaggcgtgacatag 237  Q
    | | |||| ||   |||||  | || |||||||||  ||  ||||||  |  || |||||||| || |||||| |||     | || | |||||||||||    
T  21185238 tgacttgaagccattaatggtgaagtaaacaaacaagaagtcatgaacggagatgacctgcaacatggtaaaccgttcaataacctgaagcgtgacatag 21185337  T
Q  238 tcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  21185338 tcactgtccttgaggattttatccgcctcataagcgcatatcctcc 21185383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 1788903 - 1788961
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  1788903 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 1788961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 39655703 - 39655761
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  39655703 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcc 39655761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 17028468 - 17028410
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  17028468 aggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcc 17028410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 17558904 - 17558846
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  17558904 aggcgtgacacagtcactgtccttgaggattttatccgcctcattagcgcatatcctcc 17558846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 21184455 - 21184498
Alignment:
Q  45 tgaattatctcaaaataacaatcagcataaacatataagcatta 88  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  21184455 tgaattatctctaaataataatcagcataaacatataagcatta 21184498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 283
Target Start/End: Complemental strand, 21347198 - 21347167
Alignment:
Q  252 gattttatccgcctcataagcacatatcctcc 283  Q
    ||||||||||||||||||||||||||||||||    
T  21347198 gattttatccgcctcataagcacatatcctcc 21347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 38676927 - 38676893
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttat 259  Q
    |||||||||||||||||||||||||| ||||||||    
T  38676927 aggcgtgacatagtcactgtccttgaggattttat 38676893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 17088774 - 17088806
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgatttt 257  Q
    |||||||||||||||||||||||||| ||||||    
T  17088774 aggcgtgacatagtcactgtccttgaggatttt 17088806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 38678797 - 38678742
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 281  Q
    |||||||||||||||| |||| |||| ||||| ||||| ||||||||| ||||||||    
T  38678797 aggcgtgacatagtca-tgtctttgaggatttgatccgtctcataagcgcatatcct 38678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 22301155 - 22301213
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  22301155 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 22301213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 3850538 - 3850602
Alignment:
Q  220 atctaaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 284  Q
    |||| |||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  3850538 atctgaggcgtgacatagtcactgtccttgatgattttatacgcctcataagcgcatatcctcct 3850602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 11674110 - 11674056
Alignment:
Q  229 gtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  11674110 gtgacatagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 11674056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 31210079 - 31210137
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  31210079 aggcgtgacatagtcactgtccttgaggattttatccgcctcataagtgcatatcctcc 31210137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 31206630 - 31206686
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 281  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||| ||||||||    
T  31206630 aggcgtgacatagtcactgtctttgaggattttatccacctcataagcgcatatcct 31206686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 39426450 - 39426513
Alignment:
Q  220 atctaaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| |||||||||  |||||||||    
T  39426450 atctgaggcgtgatatagtcactgtccttgaggattttatccgtctcataagcgaatatcctcc 39426513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 15569679 - 15569622
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||| |||||||||||||   ||||| ||||||||||||||||||||||||||    
T  15569679 aggcgtgacaaagtcactgtccttagggattt-atccgcctcataagcacatatcctcc 15569622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 32352433 - 32352490
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  32352433 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 32352490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 82735 - 82677
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  82735 aggcgtgacatagtcactatccttgaggattttatccgcctcataagcgcatatcctcc 82677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 6591853 - 6591911
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  6591853 aggcgtgacgtagtcactgtccttgaggattttatccgcctcataagcgcatatcctcc 6591911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 19697849 - 19697907
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
T  19697849 aggcgtgacatagtcattgtccttgaggattttatccgcctcataagcgcatatcctcc 19697907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 15518127 - 15518074
Alignment:
Q  228 cgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 281  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||    
T  15518127 cgtgacatagtcactttccttgaggattatatccgcctcataagcgcatatcct 15518074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 24044937 - 24044994
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||||||||| ||||||||||||| | ||||| || |||||||||||| ||||||||||    
T  24044937 aggcgtgacaaagtcactgtccttaaggattt-attcgcctcataagcgcatatcctcc 24044994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 24041632 - 24041692
Alignment:
Q  223 taaggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcct 284  Q
    |||||||||||| |||||||||| || | || ||||| |||||||||||| |||||||||||    
T  24041632 taaggcgtgacaaagtcactgtctttaa-gaatttattcgcctcataagcgcatatcctcct 24041692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 19973781 - 19973730
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacata 277  Q
    |||||||||| ||||||||||||| | || |||||||||||||||||| ||||    
T  19973781 aggcgtgacaaagtcactgtccttaaaga-tttatccgcctcataagcgcata 19973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 18594928 - 18594875
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatat 278  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  18594928 aggcgtgacattgtcactgtccttgaagattttatccgcctcataagcgcatat 18594875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 26703023 - 26703079
Alignment:
Q  227 gcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  26703023 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcc 26703079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 26972756 - 26972812
Alignment:
Q  227 gcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    ||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||    
T  26972756 gcgtgacttagtcactgtccttgaggattttatccgcctcataaacgcatatcctcc 26972812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 283
Target Start/End: Complemental strand, 13292160 - 13292009
Alignment:
Q  136 aattgcggtaatttgaggctggtaatgaagagcaaacaaacaccaaaccatgaatagcaataacctgcaaaatagtaaactgttat-----ctaaggcgt 230  Q
    ||||||||| ||||||||  ||||||||||||||||||| ||  ||||| ||||  || || |||| |||||||||||| || |||     || |||| |    
T  13292160 aattgcggtgatttgaggtcggtaatgaagagcaaacaaccatgaaaccgtgaacggcgatgacctacaaaatagtaaattgctatctgacctgaggcat 13292061  T
Q  231 gacatagtcactgtccttgacgattttatccgcctcataagcacatatcctcc 283  Q
    |||  ||| ||||||||| | || |||||||||||||||||| ||||||||||    
T  13292060 gacgaagttactgtccttaaaga-tttatccgcctcataagcgcatatcctcc 13292009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 39292208 - 39292156
Alignment:
Q  229 gtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 281  Q
    |||| ||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  39292208 gtgatatagtcactgtccttaaggattttatccgcctcataagcgcatatcct 39292156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 6764 - 6820
Alignment:
Q  225 aggcgtgacatagtcactgtccttgacgattttatccgcctcataagcacatatcct 281  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||  ||||||||    
T  6764 aggcgtgacatagtcactgtcattgaggattttatccgcctcataagtgcatatcct 6820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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