View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15780_low_12 (Length: 254)

Name: NF15780_low_12
Description: NF15780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15780_low_12
NF15780_low_12
[»] scaffold0087 (6 HSPs)
scaffold0087 (21-245)||(54543-54767)
scaffold0087 (21-241)||(29285-29505)
scaffold0087 (21-241)||(11903-12123)
scaffold0087 (44-241)||(18960-19157)
scaffold0087 (31-228)||(33230-33427)
scaffold0087 (20-80)||(4441-4501)
[»] chr6 (8 HSPs)
chr6 (19-241)||(5754857-5755079)
chr6 (50-238)||(5852193-5852381)
chr6 (31-198)||(5829158-5829325)
chr6 (39-233)||(5890735-5890929)
chr6 (29-226)||(5826543-5826740)
chr6 (91-196)||(3778092-3778197)
chr6 (29-117)||(5879389-5879477)
chr6 (176-225)||(2715604-2715653)


Alignment Details
Target: scaffold0087 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 54543 - 54767
Alignment:
Q  21 acctgagttccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataaccc 120  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  54543 acctgaattccaatcaattgtccggcaaacttagtgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataaccc 54642  T
Q  121 attcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcattt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  54643 attcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccaaaatcattt 54742  T
Q  221 gttcatttgtcttccctttcttctc 245  Q
    |||||||||||||||||||||||||    
T  54743 gttcatttgtcttccctttcttctc 54767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 29285 - 29505
Alignment:
Q  21 acctgagttccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataaccc 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29285 acctgaattccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataaccc 29384  T
Q  121 attcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcattt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  29385 attcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcagtccatttccaaaatcattt 29484  T
Q  221 gttcatttgtcttccctttct 241  Q
    |||||||||||||||||||||    
T  29485 gttcatttgtcttccctttct 29505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 11903 - 12123
Alignment:
Q  21 acctgagttccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataaccc 120  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  11903 acctgaattccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccaccaaaaatgatttaaggaatttggatctaagcaataaccc 12002  T
Q  121 attcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcattt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  12003 attcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcagtccatttccaaaatcattt 12102  T
Q  221 gttcatttgtcttccctttct 241  Q
    |||||||||||||||||||||    
T  12103 gttcatttgtcttccctttct 12123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 44 - 241
Target Start/End: Original strand, 18960 - 19157
Alignment:
Q  44 ggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataacccattcaaagtgatgtcacttccag 143  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18960 ggcaaacttagtgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataacccattcaaagtgatgtcacttccag 19059  T
Q  144 atttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcatttgttcatttgtcttccctttct 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  19060 atttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcagtccatttccaaaatcatttgttcatttgtcttccctttct 19157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 33230 - 33427
Alignment:
Q  31 caatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataacccattca-aagt 129  Q
    |||| |||||||| ||||||||||||||||||||||| |||||||| ||    |||||| ||||||||| |||||||||||| |||||||||| |  ||     
T  33230 caataaattgtctagcaaacttagtgacaacatacaaaaattgtgttccgcagaaaatggtttaaggaaattggatctaagcgataacccatttattaga 33329  T
Q  130 gatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcatttgttcattt 228  Q
    |    ||||||| |||||||| || ||| |||  |||||| ||||||||||||||||| |||||||||| ||  ||||||  ||||||  |||||||||    
T  33330 g-gaccacttcctgatttttcttgcttttcatcattggaggcattatctcttcgaaatgccaatgttgttgggacatttctaaaatcaactgttcattt 33427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 4441 - 4501
Alignment:
Q  20 tacctgagttccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtacca 80  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4441 tacctgaatttcaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtacca 4501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 5754857 - 5755079
Alignment:
Q  19 atacctgagttccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataac 118  Q
    |||||||  |||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5754857 atacctggattccaatcaattgtctggaaatcttagtgacaacatacaacaattgtgtaccacgaaaaatgatttaaggaatttggatctaagcaataac 5754956  T
Q  119 ccattcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcat 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  5754957 ccattcaatgtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttggaaataccaatgttgtcagtccatttccaaaatcat 5755056  T
Q  219 ttgttcatttgtcttccctttct 241  Q
    |||||||||||||||||||||||    
T  5755057 ttgttcatttgtcttccctttct 5755079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 50 - 238
Target Start/End: Original strand, 5852193 - 5852381
Alignment:
Q  50 cttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataacccattcaaagtgatgtcacttccagattttt 149  Q
    ||||||||||||||||||||||| |||      ||||||| ||||||||| |||||||||||||||||||||||||| |||| | |||||||  ||||||    
T  5852193 cttagtgacaacatacaacaattatgtttagcaaaaaatggtttaaggaaattggatctaagcaataacccattcaatgtgaggccacttcccaattttt 5852292  T
Q  150 catgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcatttgttcatttgtcttccctt 238  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||  |||||||    
T  5852293 catgttttccattgttggagacattatctcttcaaaataccaatgttatcgggccatttccgaaatcatttgttcatttgcgttccctt 5852381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 5829158 - 5829325
Alignment:
Q  31 caatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataacccattca-aagt 129  Q
    |||| |||||||| |||||||||||||||||||||||||||||||| ||   ||||||| ||||||||| |||||||||||| |||||||||| |  ||     
T  5829158 caataaattgtctagcaaacttagtgacaacatacaacaattgtgttccgcaaaaaatggtttaaggaaattggatctaagcgataacccatttattaga 5829257  T
Q  130 gatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgt 198  Q
    |    ||||||| |||||||| || ||| ||| ||||||| ||||||||||||||||| ||||||||||    
T  5829258 g-gaccacttcctgatttttcttgcttttcatctttggaggcattatctcttcgaaatgccaatgttgt 5829325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 233
Target Start/End: Complemental strand, 5890929 - 5890735
Alignment:
Q  39 tgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataacccattcaaa-gtgatgtcac 137  Q
    ||||||||||||| | |||||||||||||||||||||| |    ||||||| |||| ||  ||| ||||||||  ||||||||||| || |||  |||||    
T  5890929 tgtctggcaaactcaatgacaacatacaacaattgtgttctgcaaaaaatggtttagggcgtttagatctaagtgataacccattcgaacgtgg-gtcac 5890831  T
Q  138 ttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcatttgttcatttgtctt 233  Q
    |||||||| |||||| |||| |||  ||||| |||||||||||||||||||||||||| || ||   ||| || ||||||| |||||| |||||||    
T  5890830 ttccagatgtttcatatttttcatcattggacacattatctcttcgaaataccaatgtcgttggcatattacctaaatcatatgttcacttgtctt 5890735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 5826543 - 5826740
Alignment:
Q  29 tccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataacccattcaaag 128  Q
    |||||| |||||||||||||||||||||| | ||||| |||||||||| ||   | ||||| ||| | | |||||||| | |||||||| |||||||  |    
T  5826543 tccaataaattgtctggcaaacttagtgatagcatactacaattgtgttccgcaagaaatggttttaagtatttggatttgagcaataatccattcattg 5826642  T
Q  129 tgatgtc-acttccagatttttcatgttttccatttttggagacattatctcttcgaaataccaatgttgtcggtccatttccgaaatcatttgttcat 226  Q
     || | | |||||| || ||||| || ||| |||  ||||||| |||||||||| |||||||||||||| ||||  |||||||||||||| ||| ||||    
T  5826643 -gaggaccacttcctgacttttcttgcttttcatcgttggagatattatctcttagaaataccaatgttttcgggacatttccgaaatcacttgctcat 5826740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 3778092 - 3778197
Alignment:
Q  91 tttaaggaatttggatctaagcaataacccattcaaagtgatgtcacttccagatttttcatgttttccatttttggagacattatctcttcgaaatacc 190  Q
    ||||||||| | | ||||||||||||||   ||| | |||| | ||||| |  ||||||||||||||||||| ||||||||||||||| ||||||||||     
T  3778092 tttaaggaaatagtatctaagcaataacaatttctatgtgaggccactttccaatttttcatgttttccattgttggagacattatctattcgaaataca 3778191  T
Q  191 aatgtt 196  Q
    ||||||    
T  3778192 aatgtt 3778197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 5879389 - 5879477
Alignment:
Q  29 tccaatcaattgtctggcaaacttagtgacaacatacaacaattgtgtaccatgaaaaatgatttaaggaatttggatctaagcaataa 117  Q
    |||||| || ||||||||| ||||||||| | |||||||||||||||| ||   ||||||| ||| | | |||||||||| ||||||||    
T  5879389 tccaataaactgtctggcagacttagtgatagcatacaacaattgtgttccccaaaaaatggttttaagtatttggatctgagcaataa 5879477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 2715653 - 2715604
Alignment:
Q  176 tctcttcgaaataccaatgttgtcggtccatttccgaaatcatttgttca 225  Q
    ||||||| |||||||||||||||||| |||||||| |||| | |||||||    
T  2715653 tctcttcaaaataccaatgttgtcgggccatttccaaaatgacttgttca 2715604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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