View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15780_low_5 (Length: 410)

Name: NF15780_low_5
Description: NF15780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15780_low_5
NF15780_low_5
[»] chr4 (3 HSPs)
chr4 (215-301)||(1159299-1159385)
chr4 (168-219)||(1159214-1159268)
chr4 (346-397)||(1159407-1159461)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 215 - 301
Target Start/End: Original strand, 1159299 - 1159385
Alignment:
Q  215 aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1159299 aaaaatgtaacaataaggaaagtatagtacttacttacatagagtttccttactttaattaagaggcgtatcaatcacattacatac 1159385  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 1159214 - 1159268
Alignment:
Q  168 tataatactcatataga---gaaaaagctgtaatgtttctttcagttgccaaaaa 219  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  1159214 tataatactcatatagatcagaaaaagctgtaatgtttctttcagttgccaaaaa 1159268  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 397
Target Start/End: Original strand, 1159407 - 1159461
Alignment:
Q  346 tcccaagaaaatgacattattattttt---tggttaggaaaatgacatttgctct 397  Q
    |||||||||||||||||||||||| ||   |||||||||||||||||||||||||    
T  1159407 tcccaagaaaatgacattattattattatttggttaggaaaatgacatttgctct 1159461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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