View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15780_low_9 (Length: 299)
Name: NF15780_low_9
Description: NF15780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15780_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 34036929 - 34037202
Alignment:
| Q |
17 |
actaattggttgtttttcacatgactttttaaagacttaattgatgtatttttggagtttaagaactactaatgatcaacttaatacgagtgttaaccaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34036929 |
actaattggttgtttttcacatgactttttaaagacttaattgatgtatttttggagtttaagaactactaatgatcaacttaatacgagtgttaaccaa |
34037028 |
T |
|
| Q |
117 |
ttgatgggctaatagttggatgaaagaatagtttttggacgtttttagtttattatagtagtcgatggactgaatttgtaaaaaagtggtactttagagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34037029 |
ttgatgggctaatagttggatgaaagaatagtttttggacgtttttagttgattatagtagttgatggactgaatttgtaaaaaagtggtattttagagg |
34037128 |
T |
|
| Q |
217 |
ttgactgtttgtttgttcaatgaaaaaatatatgcaaagtttctaaaatctcatttactaatttaacacctttg |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34037129 |
ttgactgtttgtttgttcaatgaaaaaatatatgcaaagtttctaaaatctcatttactaatttaacacctttg |
34037202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University